Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001681

Physical Location & Seq

Genomic Coordinates Forward (+)

18930405 .. 18931640

Gene Structure 1236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g20550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGGTAAGGGAGGCCAATCCTGCAATGGCGTCGTTAGAGAAGCCAAACCAGTTAAGCAGGAAAACATGGCTGCTTGGCTTGTTGATGTTAACACCATCAAGATCATGCCTTTCAAGCTCCCCACTCTCGGACCGAATGACGTTCGAATTCGGATAAAGGCTGTCGGCATTTGCGGAAGTGATGTCCACTACCTCAAGACCATGAAATGTGCGGATTTTGAGGTTAAAGAGCCAATGGTGATCGATCACGAGTGTGCTGGGATCGTAGACAAAGTTGGGAGCGAGGTGAAGCATCTGGTGCGTGGTGATCGCGTGGCGGTTGAGCCCGGTATCAGCTGTGCACGGTGCCAGCAGTGCAAAGGAGGCCGCTACAATCTATGCCCCGACATGAAGTTTTTCGCCACCCCACCTGTTCATGGTTCATTGGCGAATCAGATTGTGCACCCCGCGGATTTGTGCTTCAAATTGCCGGAAAATGTGAGCTTGGAGGAAGGGGCAATGTGTGAGCCCTTGAGTGTTGGGGTTCATGCTTGTCGGCGAGCCAATGTTGGTCCCGAAACAACTGTTCTGATCATCGGAGCAGGGCCTATTGGTCTGGTTTCAGTTTTGGCTGCTCGTGCTTTCGGGGCACCGAGAATTGTCATTGTCGATATGGACGACAAGCGTTTAGCCATGGCAAAGTCTCTCGGCGCTGATGGCACCGTCAAAGTTTCAACGAAAATGGAGGATTTAGATGGCGAAGTTGCCAAGATTAAAGAAGCCATGGAATCCGAGGTGGATGTGACCTTTGATTGTGTGGGTTTCAATAAAACCATGTCCACAGGTCTCAACGCCACTCGTCCCGGCGGCAAAGTCTGCCTTGTCGGAATGGGACACGGCATGATGACAGTGCCTCTCACTCCTGCTGCTGCTAGAGAGGTTGATGTTGTTGGGGTTTTCCGATACAAGAACACATGGCCGCTTTGCCTCGAATTTTTGAGAAGTGGGAAGATCGATGTGAAGCCGCTTATTACACACCGGTATGGATTTACAGAGAAGGAGGTGGAAGAAGCCTTTGCAACAAGTGCTCGTGGGGGCAACGCCATCAAAGTCATGTTTAATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003939 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0008150 GO:0008152 GO:0009506 GO:0016491 GO:0016614 GO:0016616 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00040 ko00051 ko01100 map00040 map00051 map01100

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

369

Amino Acids

39.59

Weight (kDa)

8.14

Isoelectric Point (pI)

23.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	44 - 158	7.4e-27	Alcohol dehydrogenase GroES-like domain
Glu_dehyd_C	PF16912	165 - 294	2.7e-09	Glucose dehydrogenase C-terminus
ADH_zinc_N	PF00107	196 - 326	7.6e-29	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	229 - 359	3.4e-07	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51970 AT5G51970
fragaria_vesca	FvH4_7g28870 FvH4_7g28870
malus_domestica	MD00G1005600.v1.1 MD00G1005700.v1.1 MD01G1110100.v1.1 MD01G1194600.v1.1 MD01G1194700.v1.1 MD01G1195200.v1.1 MD01G1195300.v1.1 MD01G1195400.v1.1 MD01G1195500.v1.1 MD07G1261900.v1.1 MD07G1262100.v1.1 MD07G1262300.v1.1
prunus_persica	Prupe.2G288800_v2.0.a1 Prupe.2G288800_v2.0.a1 Prupe.4G240300_v2.0.a1 Prupe.4G240300_v2.0.a1 Prupe.8G142900_v2.0.a1 Prupe.8G143000_v2.0.a1
pyrus_communis	pycom01g13720 pycom01g20540 pycom01g20550 pycom01g20560 pycom01g20580 pycom01g20600 pycom01g20610 pycom07g24070 pycom07g24080 pycom07g24090 pycom07g24100 pycom07g24130
rosa_chinensis	RchiOBHm_Chr1g0376551
rosa_laevigata	RLG00000026602
rosa_multiflora	Rmu_sc0001308.1_g000011 Rmu_sc0005594.1_g000014
rosa_roxburghii	Rroxscaffold_4G00282010 Rroxscaffold_4G00282130
rosa_rugosa	Rorug01G0396500
rosa_samantha	Rh1AG407600 Rh1AG412800 Rh1BG372300 Rh1CG385100 Rh1CG386100 Rh1DG402100 Rh1DG403200
rosa_wichuraiana	Rw1G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	345, 628, 698
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	2 cut(s)	312, 449
AciI	CCGC	9 cut(s)	174, 212, 317, 367, 447, 449, 846, 959, 1004
AclWI	GGATC	1 cut(s)	269
AcoI	YGGCCR	1 cut(s)	956
AcsI	RAATTY	2 cut(s)	147, 971
AcyI	GRCGYC	1 cut(s)	30
AfiI	CCNNNNNNNGG	2 cut(s)	128, 416
AgeI	ACCGGT	1 cut(s)	1017
AgsI	TTSAA	4 cut(s)	115, 463, 714, 805
AleI	CACNNNNGTG	1 cut(s)	252
AluBI	AGCT	3 cut(s)	118, 336, 483
AluI	AGCT	3 cut(s)	118, 336, 483
Alw21I	GWGCWC	3 cut(s)	343, 444, 1069
Alw26I	GTCTC	2 cut(s)	687, 830
Alw44I	GTGCAC	2 cut(s)	339, 440
AlwI	GGATC	1 cut(s)	269
AoxI	GGCC	4 cut(s)	13, 364, 584, 956
ApaLI	GTGCAC	2 cut(s)	339, 440
ApeKI	GCWGC	4 cut(s)	71, 611, 905, 908
ApoI	RAATTY	2 cut(s)	147, 971
AsiGI	ACCGGT	1 cut(s)	1017
Asp700I	GAANNNNTTC	1 cut(s)	395
AspLEI	GCGC	1 cut(s)	692
AspS9I	GGNCC	3 cut(s)	131, 551, 584
AsuC2I	CCSGG	2 cut(s)	327, 843
AsuHPI	GGTGA	3 cut(s)	250, 298, 317
AsuII	TTCGAA	1 cut(s)	145
AvaII	GGWCC	2 cut(s)	131, 551
BaeGI	GKGCMC	3 cut(s)	343, 444, 631
BanI	GGYRCC	3 cut(s)	345, 628, 698
BanII	GRGCYC	2 cut(s)	327, 510
BauI	CACGAG	3 cut(s)	248, 615, 1068
Bbv12I	GWGCWC	3 cut(s)	343, 444, 1069
BbvI	GCAGC	4 cut(s)	58, 598, 892, 895
BccI	CCATC	4 cut(s)	104, 689, 728, 1091
BceAI	ACGGC	1 cut(s)	892
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BclI	TGATCA	1 cut(s)	570
BcnI	CCSGG	2 cut(s)	327, 843
BcoDI	GTCTC	2 cut(s)	687, 830
BfaI	CTAG	1 cut(s)	912
BfoI	RGCGCY	1 cut(s)	693
BisI	GCNGC	8 cut(s)	72, 367, 612, 847, 906, 909, 959, 1004
BlsI	GCNGC	8 cut(s)	73, 368, 613, 848, 907, 910, 960, 1005
Bme1390I	CCNGG	2 cut(s)	327, 843
Bme18I	GGWCC	2 cut(s)	131, 551
BmgT120I	GGNCC	3 cut(s)	131, 551, 584
BmiI	GGNNCC	4 cut(s)	347, 553, 630, 700
BmrFI	CCNGG	2 cut(s)	327, 843
BmsI	GCATC	1 cut(s)	301
Bpu14I	TTCGAA	1 cut(s)	145
BpuEI	CTTGAG	2 cut(s)	179, 532
BpuMI	CCSGG	2 cut(s)	327, 843
Bsa29I	ATCGAT	2 cut(s)	243, 993
BsaHI	GRCGYC	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	830
BsaJI	CCNNGG	4 cut(s)	447, 672, 762, 771
BsaWI	WCCGGW	1 cut(s)	1017
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 416
Bse118I	RCCGGY	1 cut(s)	1017
Bse1I	ACTGG	1 cut(s)	50
Bse3DI	GCAATG	2 cut(s)	31, 504
BseCI	ATCGAT	2 cut(s)	243, 993
BseDI	CCNNGG	4 cut(s)	447, 672, 762, 771
BseGI	GGATG	1 cut(s)	784
BseLI	CCNNNNNNNGG	2 cut(s)	128, 416
BseMI	GCAATG	2 cut(s)	31, 504
BseNI	ACTGG	1 cut(s)	50
BseSI	GKGCMC	3 cut(s)	343, 444, 631
BseXI	GCAGC	4 cut(s)	58, 598, 892, 895
BseYI	CCCAGC	1 cut(s)	257
Bsh1236I	CGCG	2 cut(s)	312, 449
BshFI	GGCC	4 cut(s)	15, 366, 586, 958
BshNI	GGYRCC	3 cut(s)	345, 628, 698
BshTI	ACCGGT	1 cut(s)	1017
BshVI	ATCGAT	2 cut(s)	243, 993
BsiHKAI	GWGCWC	3 cut(s)	343, 444, 1069
BsiSI	CCGG	4 cut(s)	327, 470, 843, 1018
BslFI	GGGAC	3 cut(s)	537, 825, 885
BslI	CCNNNNNNNGG	2 cut(s)	128, 416
BsmAI	GTCTC	2 cut(s)	687, 830
BsmFI	GGGAC	3 cut(s)	537, 825, 885
BsnI	GGCC	4 cut(s)	15, 366, 586, 958
Bso31I	GGTCTC	1 cut(s)	830
Bsp119I	TTCGAA	1 cut(s)	145
Bsp1286I	GDGCHC	6 cut(s)	327, 343, 444, 510, 631, 1069
Bsp143I	GATC	7 cut(s)	102, 240, 244, 261, 307, 570, 990
Bsp19I	CCATGG	2 cut(s)	672, 762
BspACI	CCGC	9 cut(s)	174, 212, 317, 367, 447, 449, 846, 959, 1004
BspANI	GGCC	4 cut(s)	15, 366, 586, 958
BspDI	ATCGAT	2 cut(s)	243, 993
BspFNI	CGCG	2 cut(s)	312, 449
BspLI	GGNNCC	4 cut(s)	347, 553, 630, 700
BspPI	GGATC	1 cut(s)	269
BspT104I	TTCGAA	1 cut(s)	145
BspT107I	GGYRCC	3 cut(s)	345, 628, 698
BspTNI	GGTCTC	1 cut(s)	830
BsrDI	GCAATG	2 cut(s)	31, 504
BsrFI	RCCGGY	1 cut(s)	1017
BsrI	ACTGG	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	1017
BssECI	CCNNGG	4 cut(s)	447, 672, 762, 771
BssMI	GATC	7 cut(s)	102, 240, 244, 261, 307, 570, 990
BssNI	GRCGYC	1 cut(s)	30
BssSI	CACGAG	3 cut(s)	248, 615, 1068
BssT1I	CCWWGG	2 cut(s)	672, 762
Bst2BI	CACGAG	3 cut(s)	248, 615, 1068
Bst4CI	ACNGT	4 cut(s)	345, 565, 703, 889
BstACI	GRCGYC	1 cut(s)	30
BstAPI	GCANNNNNTGC	3 cut(s)	298, 855, 1064
BstBI	TTCGAA	1 cut(s)	145
BstC8I	GCNNGC	2 cut(s)	350, 540
BstDSI	CCRYGG	3 cut(s)	447, 672, 762
BstF5I	GGATG	1 cut(s)	784
BstFNI	CGCG	2 cut(s)	312, 449
BstH2I	RGCGCY	1 cut(s)	693
BstHHI	GCGC	1 cut(s)	692
BstKTI	GATC	7 cut(s)	105, 243, 247, 264, 310, 573, 993
BstMAI	GTCTC	2 cut(s)	687, 830
BstMBI	GATC	7 cut(s)	102, 240, 244, 261, 307, 570, 990
BstSCI	CCNGG	2 cut(s)	325, 841
BstSLI	GKGCMC	3 cut(s)	343, 444, 631
BstUI	CGCG	2 cut(s)	312, 449
BstV1I	GCAGC	4 cut(s)	58, 598, 892, 895
Bsu15I	ATCGAT	2 cut(s)	243, 993
BsuRI	GGCC	4 cut(s)	15, 366, 586, 958
BsuTUI	ATCGAT	2 cut(s)	243, 993
BtgI	CCRYGG	3 cut(s)	447, 672, 762
BtsCI	GGATG	1 cut(s)	784
BtsI	GCAGTG	1 cut(s)	359
BtsIMutI	CAGTG	2 cut(s)	359, 894
Cac8I	GCNNGC	2 cut(s)	350, 540
CfoI	GCGC	1 cut(s)	692
Cfr10I	RCCGGY	1 cut(s)	1017
Cfr13I	GGNCC	3 cut(s)	131, 551, 584
Cfr42I	CCGCGG	1 cut(s)	450
ClaI	ATCGAT	2 cut(s)	243, 993
CpoI	CGGWCCG	1 cut(s)	131
CseI	GACGC	1 cut(s)	19
CspAI	ACCGGT	1 cut(s)	1017
CspI	CGGWCCG	1 cut(s)	131
DpnI	GATC	7 cut(s)	104, 242, 246, 263, 309, 572, 992
DpnII	GATC	7 cut(s)	102, 240, 244, 261, 307, 570, 990
EaeI	YGGCCR	1 cut(s)	956
Eco130I	CCWWGG	2 cut(s)	672, 762
Eco24I	GRGCYC	2 cut(s)	327, 510
Eco31I	GGTCTC	1 cut(s)	830
Eco47I	GGWCC	2 cut(s)	131, 551
EcoO109I	RGGNCCY	1 cut(s)	584
EcoRI	GAATTC	1 cut(s)	147
EcoT14I	CCWWGG	2 cut(s)	672, 762
EcoT38I	GRGCYC	2 cut(s)	327, 510
ErhI	CCWWGG	2 cut(s)	672, 762
FalI	AAGNNNNNCTT	2 cut(s)	843, 875
FaqI	GGGAC	3 cut(s)	537, 825, 885
FauI	CCCGC	1 cut(s)	454
FbaI	TGATCA	1 cut(s)	570
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	8 cut(s)	72, 367, 612, 847, 906, 909, 959, 1004
FokI	GGATG	1 cut(s)	791
FriOI	GRGCYC	2 cut(s)	327, 510
Fsp4HI	GCNGC	8 cut(s)	72, 367, 612, 847, 906, 909, 959, 1004
FspBI	CTAG	1 cut(s)	912
GlaI	GCGC	1 cut(s)	691
GluI	GCNGC	8 cut(s)	72, 367, 612, 847, 906, 909, 959, 1004
GsaI	CCCAGC	1 cut(s)	261
HaeII	RGCGCY	1 cut(s)	693
HaeIII	GGCC	4 cut(s)	15, 366, 586, 958
HapII	CCGG	4 cut(s)	327, 470, 843, 1018
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	1 cut(s)	692
Hin1I	GRCGYC	1 cut(s)	30
Hin6I	GCGC	1 cut(s)	690
HinP1I	GCGC	1 cut(s)	690
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	2 cut(s)	430, 767
HpaI	GTTAAC	1 cut(s)	91
HpaII	CCGG	4 cut(s)	327, 470, 843, 1018
HphI	GGTGA	3 cut(s)	250, 298, 317
Hpy166II	GTNNAC	6 cut(s)	91, 187, 268, 341, 442, 819
Hpy188I	TCNGA	8 cut(s)	131, 153, 435, 570, 578, 772, 866, 941
Hpy188III	TCNNGA	4 cut(s)	100, 196, 248, 554
Hpy8I	GTNNAC	6 cut(s)	91, 187, 268, 341, 442, 819
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	485, 1030
HpyCH4III	ACNGT	4 cut(s)	345, 565, 703, 889
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	5 cut(s)	24, 341, 357, 442, 1058
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	1 cut(s)	30
HspAI	GCGC	1 cut(s)	690
Ksp22I	TGATCA	1 cut(s)	570
KspAI	GTTAAC	1 cut(s)	91
KspI	CCGCGG	1 cut(s)	450
Kzo9I	GATC	7 cut(s)	102, 240, 244, 261, 307, 570, 990
LmnI	GCTCC	3 cut(s)	123, 279, 578
Lsp1109I	GCAGC	4 cut(s)	58, 598, 892, 895
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	912
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	781
MalI	GATC	7 cut(s)	104, 242, 246, 263, 309, 572, 992
MboI	GATC	7 cut(s)	102, 240, 244, 261, 307, 570, 990
MboII	GAAGA	2 cut(s)	1000, 1058
MhlI	GDGCHC	6 cut(s)	327, 343, 444, 510, 631, 1069
MluCI	AATT	5 cut(s)	147, 464, 636, 971, 1099
MmeI	TCCRAC	1 cut(s)	844
MroXI	GAANNNNTTC	1 cut(s)	395
MseI	TTAA	5 cut(s)	54, 90, 225, 753, 1098
MslI	CAYNNNNRTG	2 cut(s)	252, 1020
MspA1I	CMGCKG	2 cut(s)	336, 449
MspI	CCGG	4 cut(s)	327, 470, 843, 1018
MspR9I	CCNGG	2 cut(s)	327, 843
MvnI	CGCG	2 cut(s)	312, 449
NciI	CCSGG	2 cut(s)	327, 843
NcoI	CCATGG	2 cut(s)	672, 762
NdeII	GATC	7 cut(s)	102, 240, 244, 261, 307, 570, 990
NlaIV	GGNNCC	4 cut(s)	347, 553, 630, 700
NmeAIII	GCCGAG	1 cut(s)	666
NmuCI	GTSAC	1 cut(s)	781
NspV	TTCGAA	1 cut(s)	145
OliI	CACNNNNGTG	1 cut(s)	252
PcsI	WCGNNNNNNNCGW	1 cut(s)	654
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	2 cut(s)	430, 767
PinAI	ACCGGT	1 cut(s)	1017
PkrI	GCNGC	8 cut(s)	73, 368, 613, 848, 907, 910, 960, 1005
PspFI	CCCAGC	1 cut(s)	257
PspN4I	GGNNCC	4 cut(s)	347, 553, 630, 700
PspPI	GGNCC	3 cut(s)	131, 551, 584
PvuII	CAGCTG	1 cut(s)	336
RseI	CAYNNNNRTG	2 cut(s)	252, 1020
Rsr2I	CGGWCCG	1 cut(s)	131
RsrII	CGGWCCG	1 cut(s)	131
SacII	CCGCGG	1 cut(s)	450
SaqAI	TTAA	5 cut(s)	54, 90, 225, 753, 1098
SatI	GCNGC	8 cut(s)	72, 367, 612, 847, 906, 909, 959, 1004
Sau3AI	GATC	7 cut(s)	102, 240, 244, 261, 307, 570, 990
Sau96I	GGNCC	3 cut(s)	131, 551, 584
ScrFI	CCNGG	2 cut(s)	327, 843
SduI	GDGCHC	6 cut(s)	327, 343, 444, 510, 631, 1069
SfaNI	GCATC	1 cut(s)	301
Sfr303I	CCGCGG	1 cut(s)	450
SfuI	TTCGAA	1 cut(s)	145
SgrBI	CCGCGG	1 cut(s)	450
SinI	GGWCC	2 cut(s)	131, 551
SmiMI	CAYNNNNRTG	2 cut(s)	252, 1020
SmlI	CTYRAG	2 cut(s)	194, 511
SmoI	CTYRAG	2 cut(s)	194, 511
Sse9I	AATT	5 cut(s)	147, 464, 636, 971, 1099
SsiI	CCGC	9 cut(s)	174, 212, 317, 367, 447, 449, 846, 959, 1004
SspMI	CTAG	1 cut(s)	912
StyD4I	CCNGG	2 cut(s)	325, 841
StyI	CCWWGG	2 cut(s)	672, 762
TaaI	ACNGT	4 cut(s)	345, 565, 703, 889
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	5 cut(s)	145, 243, 648, 969, 993
TaqII	GACCGA	1 cut(s)	148
TasI	AATT	5 cut(s)	147, 464, 636, 971, 1099
TauI	GCSGC	4 cut(s)	369, 849, 961, 1006
TfiI	GAWTC	2 cut(s)	430, 767
Tru1I	TTAA	5 cut(s)	54, 90, 225, 753, 1098
Tru9I	TTAA	5 cut(s)	54, 90, 225, 753, 1098
TscAI	CASTG	2 cut(s)	359, 894
TseFI	GTSAC	1 cut(s)	781
TseI	GCWGC	4 cut(s)	71, 611, 905, 908
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	5 cut(s)	218, 404, 404, 411, 515
TspRI	CASTG	2 cut(s)	359, 894
VneI	GTGCAC	2 cut(s)	339, 440
VpaK11BI	GGWCC	2 cut(s)	131, 551
XapI	RAATTY	2 cut(s)	147, 971
XcmI	CCANNNNNNNNNTGG	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	395
XspI	CTAG	1 cut(s)	912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.