Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001681

Physical Location & Seq

Genomic Coordinates Forward (+)

33135037 .. 33136694

Gene Structure 1658 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1261900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGGTAAGGGAGGCCAATCCTGCAATGGCGTGGTTAGAGATACCAAACCTGTTGAGCAGGAAAACATGGCTGCCTGGCTCGTTGATGTTAACACCATCAGGATCCTACCTTTCAAGCTCCCCGATATTGGACTCAATGATGTTCAAATTCGGATTAAGGCTGTCGGCATTTGTGGAAGCGATGTTCACTACCTCAAGAACATGAAACTGGCGGATTTTGAGGTGAAAGAACCAATGGTGATCGGACATGAGTGTGCTGGGATCGTAGAAAAAGTTGGGAGCGACGTGAAGCATCTGGTTTCTGGTGACCGCGTGGCTGTAGAGCCCGGCATCAGCTGCTCACGGTGCCAGCAGTGCAAAGGAGGCCGCTACAATCTCTGCCCCGACATGAAGTTTTTCGCCACCCCACCGGTTCATGGTTCCTTGGCTAACCAGATTGTGCACCCTGCAGATCTGTGCTTTAAACTGCCCGAAAACGTGAGCTTGGAGGAAGGAGCAATGTGTGAGCCCTTGAGTGTTGGGGTTCACGCTTGTCGGCGAGCCAATGTTGGTCCCGAAACAACTGTTCTGATCGTCGGTGCAGGGCCGATTGGGCTGGTTTCCGTGCTCGCTGCTCGTGCTTTCGGAGCACCAAGAATTGTCATCGTAGATATGGATGATAAGCGTTTAGCCGTGGCCAAGTCTCTGGGAGCTGATGGAACCGTCAAAGTTTCAGCAAAAATGGAGGATTTAGATGACGAAGTTGCCAAGATTAAAGAAACCATGGGAGCCGAAGTTGATGTGACCTTCGACTGTGTGGGTTTCAACAAAACCATGTCTACGGGCCTCAATGCTACTCGTCCCGGCGGCAAAGTTTGCCTTGTAGGAATGGGGCACAGCATGATGACAGTCCCTCTGACACCGGCTGCAGCCAGGGAGGTTGACGTGGTTGGAGTTTTCCGGTATAAGAACACATGGCCTCTTTGCCTTGAGTTTTTGAGAAGCGGGAAGATCGACGTGAAGCCGCTTATTACCCACCGGTTTGGATTTACCGAGAAGGAGGTGGAAGAAGCATTTGCAACCAGTGCTCGTGGGGGTGACGCCATTAAAGTCATGTTTAATCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003939 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0008150 GO:0008152 GO:0009506 GO:0016491 GO:0016614 GO:0016616 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00040 ko00051 ko01100 map00040 map00051 map01100

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

369

Amino Acids

39.47

Weight (kDa)

6.46

Isoelectric Point (pI)

23.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	46 - 158	2.1e-28	Alcohol dehydrogenase GroES-like domain
Glu_dehyd_C	PF16912	165 - 294	7.2e-09	Glucose dehydrogenase C-terminus
ADH_zinc_N	PF00107	196 - 326	1.1e-28	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	244 - 358	2.3e-07	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51970 AT5G51970
fragaria_vesca	FvH4_7g28870 FvH4_7g28870
malus_domestica	MD00G1005600.v1.1 MD00G1005700.v1.1 MD01G1110100.v1.1 MD01G1194600.v1.1 MD01G1194700.v1.1 MD01G1195200.v1.1 MD01G1195300.v1.1 MD01G1195400.v1.1 MD01G1195500.v1.1 MD07G1261900.v1.1 MD07G1262100.v1.1 MD07G1262300.v1.1
prunus_persica	Prupe.2G288800_v2.0.a1 Prupe.2G288800_v2.0.a1 Prupe.4G240300_v2.0.a1 Prupe.4G240300_v2.0.a1 Prupe.8G142900_v2.0.a1 Prupe.8G143000_v2.0.a1
pyrus_communis	pycom01g13720 pycom01g20540 pycom01g20550 pycom01g20560 pycom01g20580 pycom01g20600 pycom01g20610 pycom07g24070 pycom07g24080 pycom07g24090 pycom07g24100 pycom07g24130
rosa_chinensis	RchiOBHm_Chr1g0376551
rosa_laevigata	RLG00000026602
rosa_multiflora	Rmu_sc0001308.1_g000011 Rmu_sc0005594.1_g000014
rosa_roxburghii	Rroxscaffold_4G00282010 Rroxscaffold_4G00282130
rosa_rugosa	Rorug01G0396500
rosa_samantha	Rh1AG407600 Rh1AG412800 Rh1BG372300 Rh1CG385100 Rh1CG386100 Rh1DG402100 Rh1DG403200
rosa_wichuraiana	Rw1G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	345
AccI	GTMKAC	1 cut(s)	818
AccII	CGCG	1 cut(s)	312
AciI	CCGC	6 cut(s)	212, 310, 367, 846, 984, 1004
AclWI	GGATC	3 cut(s)	97, 110, 269
AcoI	YGGCCR	1 cut(s)	675
AcsI	RAATTY	1 cut(s)	147
AcyI	GRCGYC	1 cut(s)	1080
AfiI	CCNNNNNNNGG	2 cut(s)	128, 416
AgeI	ACCGGT	2 cut(s)	409, 1017
AgsI	TTSAA	3 cut(s)	115, 146, 805
AjiI	CACGTC	3 cut(s)	286, 925, 997
AjnI	CCWGG	2 cut(s)	74, 911
AloI	GAACNNNNNNTCC	2 cut(s)	168, 200
AluBI	AGCT	4 cut(s)	118, 336, 483, 692
AluI	AGCT	4 cut(s)	118, 336, 483, 692
Alw21I	GWGCWC	4 cut(s)	444, 609, 631, 1069
Alw26I	GTCTC	1 cut(s)	687
Alw44I	GTGCAC	1 cut(s)	440
AlwI	GGATC	3 cut(s)	97, 110, 269
AoxI	GGCC	6 cut(s)	13, 364, 584, 675, 823, 956
ApaLI	GTGCAC	1 cut(s)	440
ApeKI	GCWGC	5 cut(s)	71, 336, 611, 905, 908
ApoI	RAATTY	1 cut(s)	147
AsiGI	ACCGGT	2 cut(s)	409, 1017
Asp700I	GAANNNNTTC	1 cut(s)	395
AspS9I	GGNCC	3 cut(s)	551, 584, 823
AsuC2I	CCSGG	2 cut(s)	327, 843
AsuHPI	GGTGA	4 cut(s)	235, 250, 317, 1088
AvaII	GGWCC	1 cut(s)	551
BaeGI	GKGCMC	2 cut(s)	444, 876
BalI	TGGCCA	1 cut(s)	677
BamHI	GGATCC	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	345
BanII	GRGCYC	2 cut(s)	327, 510
BauI	CACGAG	2 cut(s)	615, 1068
Bbv12I	GWGCWC	4 cut(s)	444, 609, 631, 1069
BbvI	GCAGC	5 cut(s)	58, 323, 598, 892, 920
BccI	CCATC	2 cut(s)	104, 689
BceAI	ACGGC	1 cut(s)	656
BciT130I	CCWGG	2 cut(s)	76, 913
BcnI	CCSGG	2 cut(s)	327, 843
BcoDI	GTCTC	1 cut(s)	687
BfmI	CTRYAG	4 cut(s)	318, 447, 906, 1103
BglI	GCCNNNNNGGC	1 cut(s)	592
BglII	AGATCT	1 cut(s)	451
BisI	GCNGC	8 cut(s)	72, 337, 367, 612, 847, 906, 909, 1004
BlsI	GCNGC	8 cut(s)	73, 338, 368, 613, 848, 907, 910, 1005
Bme1390I	CCNGG	4 cut(s)	76, 327, 843, 913
Bme18I	GGWCC	1 cut(s)	551
BmgBI	CACGTC	3 cut(s)	286, 925, 997
BmgT120I	GGNCC	3 cut(s)	551, 584, 823
BmiI	GGNNCC	6 cut(s)	104, 347, 421, 553, 700, 769
BmrFI	CCNGG	4 cut(s)	76, 327, 843, 913
BmsI	GCATC	2 cut(s)	301, 339
BpuEI	CTTGAG	3 cut(s)	179, 532, 989
BpuMI	CCSGG	2 cut(s)	327, 843
BsaHI	GRCGYC	1 cut(s)	1080
BsaJI	CCNNGG	4 cut(s)	423, 672, 762, 912
BsaWI	WCCGGW	3 cut(s)	409, 939, 1017
BsaXI	ACNNNNNCTCC	2 cut(s)	759, 789
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 416
Bse118I	RCCGGY	3 cut(s)	409, 901, 1017
Bse1I	ACTGG	2 cut(s)	213, 1062
Bse3DI	GCAATG	2 cut(s)	31, 504
BseBI	CCWGG	2 cut(s)	76, 913
BseDI	CCNNGG	4 cut(s)	423, 672, 762, 912
BseGI	GGATG	1 cut(s)	661
BseLI	CCNNNNNNNGG	2 cut(s)	128, 416
BseMI	GCAATG	2 cut(s)	31, 504
BseNI	ACTGG	2 cut(s)	213, 1062
BseSI	GKGCMC	2 cut(s)	444, 876
BseXI	GCAGC	5 cut(s)	58, 323, 598, 892, 920
BseYI	CCCAGC	1 cut(s)	257
BsgI	GTGCAG	1 cut(s)	600
Bsh1236I	CGCG	1 cut(s)	312
BshFI	GGCC	6 cut(s)	15, 366, 586, 677, 825, 958
BshNI	GGYRCC	1 cut(s)	345
BshTI	ACCGGT	2 cut(s)	409, 1017
BsiHKAI	GWGCWC	4 cut(s)	444, 609, 631, 1069
BsiSI	CCGG	6 cut(s)	327, 410, 843, 902, 940, 1018
BslFI	GGGAC	3 cut(s)	537, 825, 875
BslI	CCNNNNNNNGG	2 cut(s)	128, 416
BsmAI	GTCTC	1 cut(s)	687
BsmFI	GGGAC	3 cut(s)	537, 825, 875
BsnI	GGCC	6 cut(s)	15, 366, 586, 677, 825, 958
Bsp1286I	GDGCHC	7 cut(s)	327, 444, 510, 609, 631, 876, 1069
Bsp143I	GATC	6 cut(s)	102, 240, 261, 451, 570, 990
Bsp19I	CCATGG	1 cut(s)	762
BspACI	CCGC	6 cut(s)	212, 310, 367, 846, 984, 1004
BspANI	GGCC	6 cut(s)	15, 366, 586, 677, 825, 958
BspFNI	CGCG	1 cut(s)	312
BspLI	GGNNCC	6 cut(s)	104, 347, 421, 553, 700, 769
BspMAI	CTGCAG	2 cut(s)	451, 910
BspPI	GGATC	3 cut(s)	97, 110, 269
BspT107I	GGYRCC	1 cut(s)	345
BsrDI	GCAATG	2 cut(s)	31, 504
BsrFI	RCCGGY	3 cut(s)	409, 901, 1017
BsrI	ACTGG	2 cut(s)	213, 1062
BssAI	RCCGGY	3 cut(s)	409, 901, 1017
BssECI	CCNNGG	4 cut(s)	423, 672, 762, 912
BssMI	GATC	6 cut(s)	102, 240, 261, 451, 570, 990
BssNI	GRCGYC	1 cut(s)	1080
BssSI	CACGAG	2 cut(s)	615, 1068
BssT1I	CCWWGG	2 cut(s)	423, 762
Bst2BI	CACGAG	2 cut(s)	615, 1068
Bst2UI	CCWGG	2 cut(s)	76, 913
Bst4CI	ACNGT	5 cut(s)	345, 565, 703, 794, 889
BstACI	GRCGYC	1 cut(s)	1080
BstAPI	GCANNNNNTGC	3 cut(s)	336, 855, 1064
BstC8I	GCNNGC	3 cut(s)	350, 540, 609
BstDSI	CCRYGG	2 cut(s)	672, 762
BstEII	GGTNACC	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	661
BstFNI	CGCG	1 cut(s)	312
BstKTI	GATC	6 cut(s)	105, 243, 264, 454, 573, 993
BstMAI	GTCTC	1 cut(s)	687
BstMBI	GATC	6 cut(s)	102, 240, 261, 451, 570, 990
BstNI	CCWGG	2 cut(s)	76, 913
BstPI	GGTNACC	1 cut(s)	305
BstSCI	CCNGG	4 cut(s)	74, 325, 841, 911
BstSFI	CTRYAG	4 cut(s)	318, 447, 906, 1103
BstSLI	GKGCMC	2 cut(s)	444, 876
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	5 cut(s)	58, 323, 598, 892, 920
BstX2I	RGATCY	2 cut(s)	102, 451
BstXI	CCANNNNNNTGG	2 cut(s)	685, 1022
BstYI	RGATCY	2 cut(s)	102, 451
BsuRI	GGCC	6 cut(s)	15, 366, 586, 677, 825, 958
BtgI	CCRYGG	2 cut(s)	672, 762
BtgZI	GCGATG	1 cut(s)	195
BtrI	CACGTC	3 cut(s)	286, 925, 997
BtsCI	GGATG	1 cut(s)	661
BtsI	GCAGTG	1 cut(s)	359
BtsIMutI	CAGTG	2 cut(s)	359, 1069
Cac8I	GCNNGC	3 cut(s)	350, 540, 609
Cfr10I	RCCGGY	3 cut(s)	409, 901, 1017
Cfr13I	GGNCC	3 cut(s)	551, 584, 823
CseI	GACGC	1 cut(s)	1088
CspAI	ACCGGT	2 cut(s)	409, 1017
DpnI	GATC	6 cut(s)	104, 242, 263, 453, 572, 992
DpnII	GATC	6 cut(s)	102, 240, 261, 451, 570, 990
DraI	TTTAAA	1 cut(s)	463
EaeI	YGGCCR	1 cut(s)	675
EciI	GGCGGA	1 cut(s)	227
Eco130I	CCWWGG	2 cut(s)	423, 762
Eco24I	GRGCYC	2 cut(s)	327, 510
Eco47I	GGWCC	1 cut(s)	551
Eco91I	GGTNACC	1 cut(s)	305
EcoO65I	GGTNACC	1 cut(s)	305
EcoRII	CCWGG	2 cut(s)	74, 911
EcoT14I	CCWWGG	2 cut(s)	423, 762
EcoT38I	GRGCYC	2 cut(s)	327, 510
ErhI	CCWWGG	2 cut(s)	423, 762
FalI	AAGNNNNNCTT	2 cut(s)	843, 875
FaqI	GGGAC	3 cut(s)	537, 825, 875
FauI	CCCGC	1 cut(s)	977
FblI	GTMKAC	1 cut(s)	818
Fnu4HI	GCNGC	8 cut(s)	72, 337, 367, 612, 847, 906, 909, 1004
FokI	GGATG	1 cut(s)	668
FriOI	GRGCYC	2 cut(s)	327, 510
Fsp4HI	GCNGC	8 cut(s)	72, 337, 367, 612, 847, 906, 909, 1004
GluI	GCNGC	8 cut(s)	72, 337, 367, 612, 847, 906, 909, 1004
GsaI	CCCAGC	1 cut(s)	261
HaeIII	GGCC	6 cut(s)	15, 366, 586, 677, 825, 958
HapII	CCGG	6 cut(s)	327, 410, 843, 902, 940, 1018
HgaI	GACGC	1 cut(s)	1088
Hin1I	GRCGYC	1 cut(s)	1080
HincII	GTYRAC	2 cut(s)	91, 922
HindII	GTYRAC	2 cut(s)	91, 922
HinfI	GANTC	1 cut(s)	132
HpaI	GTTAAC	1 cut(s)	91
HpaII	CCGG	6 cut(s)	327, 410, 843, 902, 940, 1018
HphI	GGTGA	4 cut(s)	235, 250, 317, 1088
Hpy166II	GTNNAC	6 cut(s)	91, 187, 442, 526, 819, 922
Hpy188I	TCNGA	5 cut(s)	153, 245, 570, 626, 897
Hpy188III	TCNNGA	3 cut(s)	100, 196, 554
Hpy8I	GTNNAC	6 cut(s)	91, 187, 442, 526, 819, 922
Hpy99I	CGWCG	3 cut(s)	287, 578, 998
HpyAV	CCTTC	3 cut(s)	485, 796, 1030
HpyCH4III	ACNGT	5 cut(s)	345, 565, 703, 794, 889
HpyCH4IV	ACGT	4 cut(s)	285, 477, 924, 996
HpyCH4V	TGCA	7 cut(s)	24, 357, 442, 449, 581, 908, 1058
HpySE526I	ACGT	4 cut(s)	285, 477, 924, 996
Hsp92I	GRCGYC	1 cut(s)	1080
KspAI	GTTAAC	1 cut(s)	91
Kzo9I	GATC	6 cut(s)	102, 240, 261, 451, 570, 990
LmnI	GCTCC	6 cut(s)	123, 279, 494, 626, 689, 767
Lsp1109I	GCAGC	5 cut(s)	58, 323, 598, 892, 920
LweI	GCATC	2 cut(s)	301, 339
MaeII	ACGT	4 cut(s)	285, 477, 924, 996
MaeIII	GTNAC	3 cut(s)	305, 781, 1076
MalI	GATC	6 cut(s)	104, 242, 263, 453, 572, 992
MboI	GATC	6 cut(s)	102, 240, 261, 451, 570, 990
MboII	GAAGA	2 cut(s)	1000, 1058
MflI	RGATCY	2 cut(s)	102, 451
MhlI	GDGCHC	7 cut(s)	327, 444, 510, 609, 631, 876, 1069
MlsI	TGGCCA	1 cut(s)	677
MluCI	AATT	2 cut(s)	147, 636
MluNI	TGGCCA	1 cut(s)	677
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	910
Mox20I	TGGCCA	1 cut(s)	677
MroXI	GAANNNNTTC	1 cut(s)	395
MscI	TGGCCA	1 cut(s)	677
MseI	TTAA	6 cut(s)	90, 156, 462, 753, 1086, 1098
MslI	CAYNNNNRTG	1 cut(s)	252
Msp20I	TGGCCA	1 cut(s)	677
MspA1I	CMGCKG	1 cut(s)	336
MspI	CCGG	6 cut(s)	327, 410, 843, 902, 940, 1018
MspR9I	CCNGG	4 cut(s)	76, 327, 843, 913
MvaI	CCWGG	2 cut(s)	76, 913
MvnI	CGCG	1 cut(s)	312
NciI	CCSGG	2 cut(s)	327, 843
NcoI	CCATGG	1 cut(s)	762
NdeII	GATC	6 cut(s)	102, 240, 261, 451, 570, 990
NlaIV	GGNNCC	6 cut(s)	104, 347, 421, 553, 700, 769
NmuCI	GTSAC	3 cut(s)	305, 781, 1076
PdmI	GAANNNNTTC	1 cut(s)	395
PinAI	ACCGGT	2 cut(s)	409, 1017
PkrI	GCNGC	8 cut(s)	73, 338, 368, 613, 848, 907, 910, 1005
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
Psp6I	CCWGG	2 cut(s)	74, 911
PspEI	GGTNACC	1 cut(s)	305
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	2 cut(s)	74, 911
PspN4I	GGNNCC	6 cut(s)	104, 347, 421, 553, 700, 769
PspPI	GGNCC	3 cut(s)	551, 584, 823
PstI	CTGCAG	2 cut(s)	451, 910
PsuI	RGATCY	2 cut(s)	102, 451
PvuII	CAGCTG	1 cut(s)	336
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	6 cut(s)	90, 156, 462, 753, 1086, 1098
SatI	GCNGC	8 cut(s)	72, 337, 367, 612, 847, 906, 909, 1004
Sau3AI	GATC	6 cut(s)	102, 240, 261, 451, 570, 990
Sau96I	GGNCC	3 cut(s)	551, 584, 823
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	4 cut(s)	76, 327, 843, 913
SduI	GDGCHC	7 cut(s)	327, 444, 510, 609, 631, 876, 1069
SfaNI	GCATC	2 cut(s)	301, 339
SfcI	CTRYAG	4 cut(s)	318, 447, 906, 1103
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	3 cut(s)	194, 511, 968
SmoI	CTYRAG	3 cut(s)	194, 511, 968
Sse9I	AATT	2 cut(s)	147, 636
SsiI	CCGC	6 cut(s)	212, 310, 367, 846, 984, 1004
StyD4I	CCNGG	4 cut(s)	74, 325, 841, 911
StyI	CCWWGG	2 cut(s)	423, 762
TaaI	ACNGT	5 cut(s)	345, 565, 703, 794, 889
TaiI	ACGT	4 cut(s)	288, 480, 927, 999
TaqI	TCGA	2 cut(s)	789, 993
TasI	AATT	2 cut(s)	147, 636
TauI	GCSGC	3 cut(s)	369, 849, 1006
Tru1I	TTAA	6 cut(s)	90, 156, 462, 753, 1086, 1098
Tru9I	TTAA	6 cut(s)	90, 156, 462, 753, 1086, 1098
TscAI	CASTG	2 cut(s)	359, 1069
TseFI	GTSAC	3 cut(s)	305, 781, 1076
TseI	GCWGC	5 cut(s)	71, 336, 611, 905, 908
Tsp45I	GTSAC	3 cut(s)	305, 781, 1076
TspDTI	ATGAA	3 cut(s)	218, 404, 404
TspGWI	ACGGA	1 cut(s)	592
TspRI	CASTG	2 cut(s)	359, 1069
VneI	GTGCAC	1 cut(s)	440
VpaK11BI	GGWCC	1 cut(s)	551
XapI	RAATTY	1 cut(s)	147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	818
XmnI	GAANNNNTTC	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.