Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001681

Physical Location & Seq

Genomic Coordinates Forward (+)

15999040 .. 16001622

Gene Structure 2583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G143000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGGTAAGGGAGGAAAGCCTGATGGAGGTGATGGTTTTGAGGAAGCCAGCAGAGATGGTTGTGAACAAGAGAACATGGCTGCTTGGCTGCTTGGTGTTAACACCCTCAAAATCCAACCTTTCAAGCTCCCTAATCTCGGACCCCGTGATGTTTTAATTCGACTCAAGGCTGTTGGCATATGTGGCAGTGATGTTCACCACTTCAAGAACATGAGATGTGCAGATTTTGTGGTGAAAGAGCCAATGGTAATCGGGCATGAGTGTGCTGGGTTCGTAGAGGAAGTTGGGAGTGAGGTGAAGCATCTGGTGCCTGGTGACCGTGTGGCAGTAGAGCCCGGCATCAATTGCAAGCGATGTGAGCTATGCAAACAAGGCCGATATAATCTATGCCCCGAGATGAAGTTTTTCGGGTCCCCTCCAACTCATGGTTGCCTGACAAATCAGGTTGTCCATCCTGGAGACCTGTGTTTTAAACTACCAAACAATGTGAGCTTGGAGGAAGGGGCAATGTGTGAGCCCTTAAGTGTTGGTGTTCATGCTTGTCGTCGGGCTAATGTCGGTCCAGAAACAAATGTTTTGGTCATGGGAGCAGGACCTATAGGACTTGTTACACTGTTGGCTGCTCGTGCCTTCGAAGCACCTAGAATTGTCGTGGCGGATGTGAATGACCACCGTTTATCCGTTGCAAAGGCTCTTGGTGCACATGAGATTGTCAAAGTTTCCACAAATATTGAGGAGGTTGCTGAAGAAATTGTTAAAATAAAAGAAGCTATGGGAACTCGAGTGGATGTAAGCTTCGATTGTGCAGGGTTTAATAAAACCATGACGACAGCTTTGAGTGCTACTGGTTCCGGTGGCAAAGTTTGCCTTGTGGGAATGGGCCAGAGAGAGCTGACTCTCCCACTCACTTCAGCTGCTGCCAGAGAGGTCGATGTGATTGGAATTTTCCGATACAAGAACACATGGCCCTTGTGCCTCGAATTGTTGAGAAGTAGTAAGGTTGATGTGAAGCCCCTGATAACACATCGTTTTGGATTCTCTCAAAAGGAAGTGGAAAAAGCATTTGAAACCAGTGCTAGTGGAGGCAATGCCATTAAGGTCATGTTTAATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003939 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0008150 GO:0008152 GO:0009506 GO:0016491 GO:0016614 GO:0016616 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00040 ko00051 ko01100 map00040 map00051 map01100

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

372

Amino Acids

39.91

Weight (kDa)

6.79

Isoelectric Point (pI)

24.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51970 AT5G51970
fragaria_vesca	FvH4_7g28870 FvH4_7g28870
malus_domestica	MD00G1005600.v1.1 MD00G1005700.v1.1 MD01G1110100.v1.1 MD01G1194600.v1.1 MD01G1194700.v1.1 MD01G1195200.v1.1 MD01G1195300.v1.1 MD01G1195400.v1.1 MD01G1195500.v1.1 MD07G1261900.v1.1 MD07G1262100.v1.1 MD07G1262300.v1.1
prunus_persica	Prupe.2G288800_v2.0.a1 Prupe.2G288800_v2.0.a1 Prupe.4G240300_v2.0.a1 Prupe.4G240300_v2.0.a1 Prupe.8G142900_v2.0.a1 Prupe.8G143000_v2.0.a1
pyrus_communis	pycom01g13720 pycom01g20540 pycom01g20550 pycom01g20560 pycom01g20580 pycom01g20600 pycom01g20610 pycom07g24070 pycom07g24080 pycom07g24090 pycom07g24100 pycom07g24130
rosa_chinensis	RchiOBHm_Chr1g0376551
rosa_laevigata	RLG00000026602
rosa_multiflora	Rmu_sc0001308.1_g000011 Rmu_sc0005594.1_g000014
rosa_roxburghii	Rroxscaffold_4G00282010 Rroxscaffold_4G00282130
rosa_rugosa	Rorug01G0396500
rosa_samantha	Rh1AG407600 Rh1AG412800 Rh1BG372300 Rh1CG385100 Rh1CG386100 Rh1DG402100 Rh1DG403200
rosa_wichuraiana	Rw1G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	307
AccB7I	CCANNNNNTGG	1 cut(s)	425
AciI	CCGC	1 cut(s)	656
AcsI	RAATTY	1 cut(s)	942
AcuI	CTGAAG	2 cut(s)	765, 894
AfiI	CCNNNNNNNGG	3 cut(s)	26, 137, 425
AflII	CTTAAG	1 cut(s)	520
AgsI	TTSAA	3 cut(s)	124, 205, 1067
AjnI	CCWGG	2 cut(s)	310, 454
AluBI	AGCT	8 cut(s)	127, 361, 492, 770, 795, 833, 892, 914
AluI	AGCT	8 cut(s)	127, 361, 492, 770, 795, 833, 892, 914
Alw21I	GWGCWC	1 cut(s)	703
Alw26I	GTCTC	1 cut(s)	453
Alw44I	GTGCAC	1 cut(s)	699
AlwNI	CAGNNNCTG	1 cut(s)	917
Ama87I	CYCGRG	2 cut(s)	392, 780
AoxI	GGCC	3 cut(s)	373, 880, 965
ApaLI	GTGCAC	1 cut(s)	699
ApeKI	GCWGC	5 cut(s)	80, 88, 620, 914, 917
ApoI	RAATTY	1 cut(s)	942
ArsI	GACNNNNNNTTYG	2 cut(s)	817, 849
Asp700I	GAANNNNTTC	1 cut(s)	404
AspS9I	GGNCC	6 cut(s)	140, 411, 560, 593, 880, 966
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	5 cut(s)	41, 188, 244, 307, 326
AsuII	TTCGAA	1 cut(s)	633
AvaI	CYCGRG	2 cut(s)	392, 780
AvaII	GGWCC	4 cut(s)	140, 411, 560, 593
BaeGI	GKGCMC	1 cut(s)	703
BanI	GGYRCC	1 cut(s)	307
BanII	GRGCYC	2 cut(s)	336, 519
BauI	CACGAG	1 cut(s)	624
Bbv12I	GWGCWC	1 cut(s)	703
BbvI	GCAGC	5 cut(s)	67, 75, 607, 901, 904
BccI	CCATC	4 cut(s)	17, 26, 50, 459
BciT130I	CCWGG	2 cut(s)	312, 456
BcnI	CCSGG	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	453
BfaI	CTAG	2 cut(s)	642, 1077
BfmI	CTRYAG	2 cut(s)	597, 1112
BfrI	CTTAAG	1 cut(s)	520
BisI	GCNGC	5 cut(s)	81, 89, 621, 915, 918
BlsI	GCNGC	5 cut(s)	82, 90, 622, 916, 919
Bme1390I	CCNGG	3 cut(s)	312, 336, 456
Bme18I	GGWCC	4 cut(s)	140, 411, 560, 593
BmeT110I	CYCGRG	2 cut(s)	392, 780
BmgT120I	GGNCC	6 cut(s)	140, 411, 560, 593, 880, 966
BmiI	GGNNCC	5 cut(s)	142, 309, 412, 413, 850
BmrFI	CCNGG	3 cut(s)	312, 336, 456
BmsI	GCATC	2 cut(s)	310, 348
BpmI	CTGGAG	1 cut(s)	477
Bpu14I	TTCGAA	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	453
BsaWI	WCCGGW	1 cut(s)	851
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 137, 425
Bse1I	ACTGG	2 cut(s)	850, 1071
Bse3DI	GCAATG	2 cut(s)	513, 1093
BseBI	CCWGG	2 cut(s)	312, 456
BseGI	GGATG	3 cut(s)	451, 664, 793
BseLI	CCNNNNNNNGG	3 cut(s)	26, 137, 425
BseMI	GCAATG	2 cut(s)	513, 1093
BseNI	ACTGG	2 cut(s)	850, 1071
BseRI	GAGGAG	1 cut(s)	749
BseSI	GKGCMC	1 cut(s)	703
BseXI	GCAGC	5 cut(s)	67, 75, 607, 901, 904
BseYI	CCCAGC	1 cut(s)	266
BsgI	GTGCAG	2 cut(s)	240, 825
BshFI	GGCC	3 cut(s)	375, 882, 967
BshNI	GGYRCC	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	703
BsiHKCI	CYCGRG	2 cut(s)	392, 780
BsiSI	CCGG	2 cut(s)	336, 852
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	3 cut(s)	26, 137, 425
BsmAI	GTCTC	1 cut(s)	453
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	3 cut(s)	375, 882, 967
Bso31I	GGTCTC	1 cut(s)	453
BsoBI	CYCGRG	2 cut(s)	392, 780
Bsp119I	TTCGAA	1 cut(s)	633
Bsp1286I	GDGCHC	3 cut(s)	336, 519, 703
BspACI	CCGC	1 cut(s)	656
BspANI	GGCC	3 cut(s)	375, 882, 967
BspLI	GGNNCC	5 cut(s)	142, 309, 412, 413, 850
BspT104I	TTCGAA	1 cut(s)	633
BspT107I	GGYRCC	1 cut(s)	307
BspTI	CTTAAG	1 cut(s)	520
BspTNI	GGTCTC	1 cut(s)	453
BsrDI	GCAATG	2 cut(s)	513, 1093
BsrI	ACTGG	2 cut(s)	850, 1071
BssSI	CACGAG	1 cut(s)	624
Bst2BI	CACGAG	1 cut(s)	624
Bst2UI	CCWGG	2 cut(s)	312, 456
Bst4CI	ACNGT	3 cut(s)	320, 615, 674
BstAFI	CTTAAG	1 cut(s)	520
BstAPI	GCANNNNNTGC	3 cut(s)	307, 345, 864
BstBI	TTCGAA	1 cut(s)	633
BstC8I	GCNNGC	2 cut(s)	49, 350
BstEII	GGTNACC	1 cut(s)	314
BstENI	CCTNNNNNAGG	1 cut(s)	24
BstF5I	GGATG	3 cut(s)	451, 664, 793
BstMAI	GTCTC	1 cut(s)	453
BstNI	CCWGG	2 cut(s)	312, 456
BstPI	GGTNACC	1 cut(s)	314
BstSCI	CCNGG	3 cut(s)	310, 334, 454
BstSFI	CTRYAG	2 cut(s)	597, 1112
BstSLI	GKGCMC	1 cut(s)	703
BstV1I	GCAGC	5 cut(s)	67, 75, 607, 901, 904
BsuRI	GGCC	3 cut(s)	375, 882, 967
BtgZI	GCGATG	1 cut(s)	367
BtsCI	GGATG	3 cut(s)	451, 664, 793
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	3 cut(s)	193, 611, 1078
Cac8I	GCNNGC	2 cut(s)	49, 350
CaiI	CAGNNNCTG	1 cut(s)	917
Cfr13I	GGNCC	6 cut(s)	140, 411, 560, 593, 880, 966
CspCI	CAANNNNNGTGG	2 cut(s)	712, 747
DraI	TTTAAA	1 cut(s)	472
EciI	GGCGGA	1 cut(s)	671
Eco24I	GRGCYC	2 cut(s)	336, 519
Eco31I	GGTCTC	1 cut(s)	453
Eco47I	GGWCC	4 cut(s)	140, 411, 560, 593
Eco57I	CTGAAG	2 cut(s)	765, 894
Eco88I	CYCGRG	2 cut(s)	392, 780
Eco91I	GGTNACC	1 cut(s)	314
EcoNI	CCTNNNNNAGG	1 cut(s)	24
EcoO109I	RGGNCCY	2 cut(s)	411, 593
EcoO65I	GGTNACC	1 cut(s)	314
EcoRII	CCWGG	2 cut(s)	310, 454
EcoT38I	GRGCYC	2 cut(s)	336, 519
FalI	AAGNNNNNCTT	2 cut(s)	852, 884
FaqI	GGGAC	1 cut(s)	397
FauNDI	CATATG	1 cut(s)	179
Fnu4HI	GCNGC	5 cut(s)	81, 89, 621, 915, 918
FokI	GGATG	3 cut(s)	438, 671, 800
FriOI	GRGCYC	2 cut(s)	336, 519
Fsp4HI	GCNGC	5 cut(s)	81, 89, 621, 915, 918
FspBI	CTAG	2 cut(s)	642, 1077
GluI	GCNGC	5 cut(s)	81, 89, 621, 915, 918
GsaI	CCCAGC	1 cut(s)	270
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	3 cut(s)	375, 882, 967
HapII	CCGG	2 cut(s)	336, 852
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HindIII	AAGCTT	1 cut(s)	793
HinfI	GANTC	3 cut(s)	162, 895, 1035
HpaI	GTTAAC	1 cut(s)	100
HpaII	CCGG	2 cut(s)	336, 852
HphI	GGTGA	5 cut(s)	41, 188, 244, 307, 326
Hpy166II	GTNNAC	4 cut(s)	65, 100, 196, 701
Hpy188I	TCNGA	2 cut(s)	140, 950
Hpy188III	TCNNGA	2 cut(s)	205, 563
Hpy8I	GTNNAC	4 cut(s)	65, 100, 196, 701
Hpy99I	CGWCG	1 cut(s)	549
HpyAV	CCTTC	2 cut(s)	494, 640
HpyCH4III	ACNGT	3 cut(s)	320, 615, 674
HpyCH4V	TGCA	6 cut(s)	221, 348, 366, 686, 701, 806
KflI	GGGWCCC	1 cut(s)	411
KspAI	GTTAAC	1 cut(s)	100
LmnI	GCTCC	2 cut(s)	132, 587
Lsp1109I	GCAGC	5 cut(s)	67, 75, 607, 901, 904
LweI	GCATC	2 cut(s)	310, 348
MaeI	CTAG	2 cut(s)	642, 1077
MaeIII	GTNAC	2 cut(s)	314, 607
MboII	GAAGA	1 cut(s)	758
MfeI	CAATTG	1 cut(s)	343
MhlI	GDGCHC	3 cut(s)	336, 519, 703
MluCI	AATT	6 cut(s)	156, 343, 645, 750, 942, 980
MlyI	GAGTC	2 cut(s)	156, 889
MmeI	TCCRAC	2 cut(s)	139, 443
MroXI	GAANNNNTTC	1 cut(s)	404
MseI	TTAA	8 cut(s)	99, 155, 471, 521, 756, 813, 1095, 1107
MslI	CAYNNNNRTG	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	914
MspCI	CTTAAG	1 cut(s)	520
MspI	CCGG	2 cut(s)	336, 852
MspR9I	CCNGG	3 cut(s)	312, 336, 456
MunI	CAATTG	1 cut(s)	343
MvaI	CCWGG	2 cut(s)	312, 456
NciI	CCSGG	1 cut(s)	336
NdeI	CATATG	1 cut(s)	179
NlaIV	GGNNCC	5 cut(s)	142, 309, 412, 413, 850
NmuCI	GTSAC	1 cut(s)	314
NspV	TTCGAA	1 cut(s)	633
PaeR7I	CTCGAG	1 cut(s)	780
PdmI	GAANNNNTTC	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	1035
PflMI	CCANNNNNTGG	1 cut(s)	425
PfoI	TCCNGGA	1 cut(s)	454
PkrI	GCNGC	5 cut(s)	82, 90, 622, 916, 919
PleI	GAGTC	2 cut(s)	156, 889
PpsI	GAGTC	2 cut(s)	156, 889
PpuMI	RGGWCCY	2 cut(s)	411, 593
Psp5II	RGGWCCY	2 cut(s)	411, 593
Psp6I	CCWGG	2 cut(s)	310, 454
PspEI	GGTNACC	1 cut(s)	314
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	2 cut(s)	310, 454
PspN4I	GGNNCC	5 cut(s)	142, 309, 412, 413, 850
PspPI	GGNCC	6 cut(s)	140, 411, 560, 593, 880, 966
PspPPI	RGGWCCY	2 cut(s)	411, 593
PspXI	VCTCGAGB	1 cut(s)	780
PstNI	CAGNNNCTG	1 cut(s)	917
PvuII	CAGCTG	1 cut(s)	914
RseI	CAYNNNNRTG	1 cut(s)	261
SaqAI	TTAA	8 cut(s)	99, 155, 471, 521, 756, 813, 1095, 1107
SatI	GCNGC	5 cut(s)	81, 89, 621, 915, 918
Sau96I	GGNCC	6 cut(s)	140, 411, 560, 593, 880, 966
SchI	GAGTC	2 cut(s)	156, 889
ScrFI	CCNGG	3 cut(s)	312, 336, 456
SduI	GDGCHC	3 cut(s)	336, 519, 703
SfaNI	GCATC	2 cut(s)	310, 348
SfcI	CTRYAG	2 cut(s)	597, 1112
Sfr274I	CTCGAG	1 cut(s)	780
SfuI	TTCGAA	1 cut(s)	633
SinI	GGWCC	4 cut(s)	140, 411, 560, 593
SlaI	CTCGAG	1 cut(s)	780
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	3 cut(s)	164, 520, 780
SmoI	CTYRAG	3 cut(s)	164, 520, 780
Sse9I	AATT	6 cut(s)	156, 343, 645, 750, 942, 980
SsiI	CCGC	1 cut(s)	656
SspI	AATATT	1 cut(s)	730
SspMI	CTAG	2 cut(s)	642, 1077
StyD4I	CCNGG	3 cut(s)	310, 334, 454
TaaI	ACNGT	3 cut(s)	320, 615, 674
TaqI	TCGA	6 cut(s)	160, 633, 781, 798, 930, 978
TaqII	GACCGA	1 cut(s)	548
TasI	AATT	6 cut(s)	156, 343, 645, 750, 942, 980
TfiI	GAWTC	1 cut(s)	1035
Tru1I	TTAA	8 cut(s)	99, 155, 471, 521, 756, 813, 1095, 1107
Tru9I	TTAA	8 cut(s)	99, 155, 471, 521, 756, 813, 1095, 1107
TscAI	CASTG	3 cut(s)	193, 618, 1078
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	5 cut(s)	80, 88, 620, 914, 917
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	2 cut(s)	413, 524
TspGWI	ACGGA	1 cut(s)	670
TspRI	CASTG	3 cut(s)	193, 618, 1078
Van91I	CCANNNNNTGG	1 cut(s)	425
Vha464I	CTTAAG	1 cut(s)	520
VneI	GTGCAC	1 cut(s)	699
VpaK11BI	GGWCC	4 cut(s)	140, 411, 560, 593
XagI	CCTNNNNNAGG	1 cut(s)	24
XapI	RAATTY	1 cut(s)	942
XhoI	CTCGAG	1 cut(s)	780
XmnI	GAANNNNTTC	1 cut(s)	404
XspI	CTAG	2 cut(s)	642, 1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.