MD01G1194700.v1.1

Sorbitol dehydrogenase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
29342987 .. 29344698
1712 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1194700.v1.1.491

Sequence Viewer

Length: 1107 bp
ATGGGCAAGGGAGGCCAATCCTGCAATGGCATGGTTAGAGATGTCAAACCTGTGGAGAAGGAAAACATGGCTGCTTGGCTCGTTGATGTTAACACCATCAAGATCCTACCTTTCAAGCTCCCCACTATTGGACCGAATGATGTTCAAATTCGAATTAAGGCTGTCGGCATTTGCGGAAGTGATGTTCACTACCTCAAGACCATGAAATGTGCGGATTTTGAGGTTAAAGAGCCGATGGTGATCGGACATGAGTGTGCTGGGATCGTAGACAAAGTTGGGAGCGAGGTGAAGCATCTGGTGCCCGGTGACCGAGTGGCGGTTGAGCCCGGCATCAGCTGCGCACATTGCCAGCAGTGCAAAGGAGGCCGCTACAATCTCTGTCCCGACATGAAGTTTTTCGCCACCCCACCGGTTCACGGTGCCTTGGCTAATCAGATTGTGCACCCTGCAGATCTGTGCTTTAAGTTGCCGGAAAATGTGAGCTTGGAGGAAGGGGCAATGTGTGAACCCTTGAGTGTTGGGGTTCACGCTTGTCGGCGAGCCAATGTTGGTCCTGAAACAACTGTTCTGATCATCGGCGCAGGGCCTATTGGTCTGGTCTCAGTTTTGGCCGCTCGTGCTTTCGGGGCACCAAGAATTGTTATAGTGGATATGGATGACAAGCGTCTAGCGATGGCAAAGTCTCTCGGGGCTGATGACACCGTCAAAGTTTCAACAAAAATGGACGATTTAGATGATGAAGTTGCCGAAATTAAAAAAGCCATGATCTCCGAAGTGGATGTGACCTTCGATTGTGTGGGTTTCAACAAAACCATGGCGACCGGCCTCAATGCTACTCGTCCTGGCGGAAAAGTCTGCCTTGTCGGAATGGGACACGGCCTGATGACAGTGCCTCTCACCCCTGCTGCTGCTAGGGAGGTCGACGTTGTTGGAGTTTTCAGATACAAGAACACATGGCCGCTTTGCCTCGAGTTTTTGAGGAGTGGGAAGATCGACGTGAAACCGCTTATCACGCACCGTTTTGGATTCACGGAGAAGGAGGTGGAAGAAGCGTTTGCAACCAGTGCTCGTGGGGGTAATGCCATCAAAGTAATGTTCAAATTGTAA

Protein Analysis

369

Amino Acids

39.49

Weight (kDa)

7.07

Isoelectric Point (pI)

21.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 44 - 158 5.2e-29 Alcohol dehydrogenase GroES-like domain
Glu_dehyd_C PF16912 165 - 293 2.8e-09 Glucose dehydrogenase C-terminus
ADH_zinc_N PF00107 196 - 326 5.7e-29 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 229 - 359 6.6e-07 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 340
AccB1I GGYRCC 3 cut(s) 298, 419, 628
AccBSI CCGCTC 1 cut(s) 614
AccI GTMKAC 2 cut(s) 267, 921
AciI CCGC 8 cut(s) 174, 212, 317, 367, 612, 846, 959, 1004
AclWI GGATC 2 cut(s) 97, 269
AcoI YGGCCR 2 cut(s) 609, 956
AcsI RAATTY 1 cut(s) 147
AfiI CCNNNNNNNGG 3 cut(s) 128, 316, 416
AgeI ACCGGT 1 cut(s) 409
AgsI TTSAA 5 cut(s) 115, 146, 714, 805, 1099
AjiI CACGTC 1 cut(s) 997
AjnI CCWGG 1 cut(s) 841
AloI GAACNNNNNNTCC 2 cut(s) 168, 200
AluBI AGCT 3 cut(s) 118, 336, 483
AluI AGCT 3 cut(s) 118, 336, 483
Alw21I GWGCWC 2 cut(s) 444, 1069
Alw26I GTCTC 2 cut(s) 604, 687
Alw44I GTGCAC 1 cut(s) 440
AlwI GGATC 2 cut(s) 97, 269
Ama87I CYCGRG 2 cut(s) 686, 968
AoxI GGCC 7 cut(s) 13, 364, 584, 609, 823, 877, 956
ApaLI GTGCAC 1 cut(s) 440
ApeKI GCWGC 4 cut(s) 71, 336, 905, 908
ApoI RAATTY 1 cut(s) 147
AsiGI ACCGGT 1 cut(s) 409
Asp700I GAANNNNTTC 1 cut(s) 395
AspLEI GCGC 2 cut(s) 341, 581
AspS9I GGNCC 3 cut(s) 131, 551, 584
AsuC2I CCSGG 2 cut(s) 303, 327
AsuHPI GGTGA 4 cut(s) 250, 298, 317, 889
AsuII TTCGAA 1 cut(s) 151
AvaI CYCGRG 2 cut(s) 686, 968
AvaII GGWCC 2 cut(s) 131, 551
BaeGI GKGCMC 3 cut(s) 303, 444, 631
BanI GGYRCC 3 cut(s) 298, 419, 628
BanII GRGCYC 1 cut(s) 327
BauI CACGAG 2 cut(s) 615, 1068
Bbv12I GWGCWC 2 cut(s) 444, 1069
BbvI GCAGC 4 cut(s) 58, 323, 892, 895
BccI CCATC 4 cut(s) 104, 229, 667, 1091
BceAI ACGGC 1 cut(s) 892
BciT130I CCWGG 1 cut(s) 843
BclI TGATCA 1 cut(s) 570
BcnI CCSGG 2 cut(s) 303, 327
BcoDI GTCTC 2 cut(s) 604, 687
BfaI CTAG 2 cut(s) 668, 912
BfmI CTRYAG 1 cut(s) 447
BglII AGATCT 1 cut(s) 451
BisI GCNGC 7 cut(s) 72, 337, 367, 612, 906, 909, 959
BlsI GCNGC 7 cut(s) 73, 338, 368, 613, 907, 910, 960
Bme1390I CCNGG 3 cut(s) 303, 327, 843
Bme18I GGWCC 2 cut(s) 131, 551
BmeT110I CYCGRG 2 cut(s) 686, 968
BmgBI CACGTC 1 cut(s) 997
BmgT120I GGNCC 3 cut(s) 131, 551, 584
BmiI GGNNCC 3 cut(s) 300, 421, 630
BmrFI CCNGG 3 cut(s) 303, 327, 843
BmsI GCATC 2 cut(s) 301, 339
BoxI GACNNNNGTC 1 cut(s) 663
Bpu14I TTCGAA 1 cut(s) 151
BpuEI CTTGAG 2 cut(s) 179, 532
BpuMI CCSGG 2 cut(s) 303, 327
BsaBI GATNNNNATC 1 cut(s) 239
BsaI GGTCTC 1 cut(s) 604
BsaJI CCNNGG 2 cut(s) 423, 813
BsaWI WCCGGW 1 cut(s) 409
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 316, 416
Bse118I RCCGGY 2 cut(s) 409, 821
Bse1I ACTGG 1 cut(s) 1062
Bse3DI GCAATG 3 cut(s) 31, 343, 504
Bse8I GATNNNNATC 1 cut(s) 239
BseBI CCWGG 1 cut(s) 843
BseDI CCNNGG 2 cut(s) 423, 813
BseGI GGATG 2 cut(s) 661, 784
BseJI GATNNNNATC 1 cut(s) 239
BseLI CCNNNNNNNGG 3 cut(s) 128, 316, 416
BseMI GCAATG 3 cut(s) 31, 343, 504
BseMII CTCAG 1 cut(s) 615
BseNI ACTGG 1 cut(s) 1062
BseRI GAGGAG 1 cut(s) 994
BseSI GKGCMC 3 cut(s) 303, 444, 631
BseXI GCAGC 4 cut(s) 58, 323, 892, 895
BseYI CCCAGC 1 cut(s) 257
Bsh1285I CGRYCG 1 cut(s) 822
BshFI GGCC 7 cut(s) 15, 366, 586, 611, 825, 879, 958
BshNI GGYRCC 3 cut(s) 298, 419, 628
BshTI ACCGGT 1 cut(s) 409
BsiEI CGRYCG 1 cut(s) 822
BsiHKAI GWGCWC 2 cut(s) 444, 1069
BsiHKCI CYCGRG 2 cut(s) 686, 968
BsiSI CCGG 5 cut(s) 303, 327, 410, 470, 822
BslFI GGGAC 2 cut(s) 366, 885
BslI CCNNNNNNNGG 3 cut(s) 128, 316, 416
BsmAI GTCTC 2 cut(s) 604, 687
BsmFI GGGAC 2 cut(s) 366, 885
BsnI GGCC 7 cut(s) 15, 366, 586, 611, 825, 879, 958
Bso31I GGTCTC 1 cut(s) 604
BsoBI CYCGRG 2 cut(s) 686, 968
Bsp119I TTCGAA 1 cut(s) 151
Bsp1286I GDGCHC 5 cut(s) 303, 327, 444, 631, 1069
Bsp143I GATC 7 cut(s) 102, 240, 261, 451, 570, 765, 990
Bsp19I CCATGG 1 cut(s) 813
BspACI CCGC 8 cut(s) 174, 212, 317, 367, 612, 846, 959, 1004
BspANI GGCC 7 cut(s) 15, 366, 586, 611, 825, 879, 958
BspCNI CTCAG 1 cut(s) 614
BspLI GGNNCC 3 cut(s) 300, 421, 630
BspMAI CTGCAG 1 cut(s) 451
BspPI GGATC 2 cut(s) 97, 269
BspT104I TTCGAA 1 cut(s) 151
BspT107I GGYRCC 3 cut(s) 298, 419, 628
BspTNI GGTCTC 1 cut(s) 604
BsrBI CCGCTC 1 cut(s) 614
BsrDI GCAATG 3 cut(s) 31, 343, 504
BsrFI RCCGGY 2 cut(s) 409, 821
BsrI ACTGG 1 cut(s) 1062
BssAI RCCGGY 2 cut(s) 409, 821
BssECI CCNNGG 2 cut(s) 423, 813
BssMI GATC 7 cut(s) 102, 240, 261, 451, 570, 765, 990
BssSI CACGAG 2 cut(s) 615, 1068
BssT1I CCWWGG 2 cut(s) 423, 813
Bst2BI CACGAG 2 cut(s) 615, 1068
Bst2UI CCWGG 1 cut(s) 843
Bst4CI ACNGT 5 cut(s) 419, 565, 703, 889, 1019
BstAPI GCANNNNNTGC 3 cut(s) 298, 336, 1064
BstBI TTCGAA 1 cut(s) 151
BstC8I GCNNGC 2 cut(s) 350, 540
BstDEI CTNAG 1 cut(s) 601
BstDSI CCRYGG 1 cut(s) 813
BstEII GGTNACC 1 cut(s) 305
BstF5I GGATG 2 cut(s) 661, 784
BstHHI GCGC 2 cut(s) 341, 581
BstKTI GATC 7 cut(s) 105, 243, 264, 454, 573, 768, 993
BstMAI GTCTC 2 cut(s) 604, 687
BstMBI GATC 7 cut(s) 102, 240, 261, 451, 570, 765, 990
BstMCI CGRYCG 1 cut(s) 822
BstNI CCWGG 1 cut(s) 843
BstPAI GACNNNNGTC 1 cut(s) 663
BstPI GGTNACC 1 cut(s) 305
BstSCI CCNGG 3 cut(s) 301, 325, 841
BstSFI CTRYAG 1 cut(s) 447
BstSLI GKGCMC 3 cut(s) 303, 444, 631
BstV1I GCAGC 4 cut(s) 58, 323, 892, 895
BstX2I RGATCY 2 cut(s) 102, 451
BstYI RGATCY 2 cut(s) 102, 451
BsuRI GGCC 7 cut(s) 15, 366, 586, 611, 825, 879, 958
BtgI CCRYGG 1 cut(s) 813
BtgZI GCGATG 1 cut(s) 686
BtrI CACGTC 1 cut(s) 997
BtsCI GGATG 2 cut(s) 661, 784
BtsI GCAGTG 1 cut(s) 359
BtsIMutI CAGTG 3 cut(s) 359, 894, 1069
Cac8I GCNNGC 2 cut(s) 350, 540
CfoI GCGC 2 cut(s) 341, 581
Cfr10I RCCGGY 2 cut(s) 409, 821
Cfr13I GGNCC 3 cut(s) 131, 551, 584
CseI GACGC 1 cut(s) 653
CspAI ACCGGT 1 cut(s) 409
CviAII CATG 8 cut(s) 31, 67, 202, 248, 388, 763, 814, 954
DdeI CTNAG 1 cut(s) 601
DpnI GATC 7 cut(s) 104, 242, 263, 453, 572, 767, 992
DpnII GATC 7 cut(s) 102, 240, 261, 451, 570, 765, 990
EaeI YGGCCR 2 cut(s) 609, 956
EciI GGCGGA 1 cut(s) 861
Eco130I CCWWGG 2 cut(s) 423, 813
Eco24I GRGCYC 1 cut(s) 327
Eco31I GGTCTC 1 cut(s) 604
Eco47I GGWCC 2 cut(s) 131, 551
Eco88I CYCGRG 2 cut(s) 686, 968
Eco91I GGTNACC 1 cut(s) 305
EcoO109I RGGNCCY 1 cut(s) 584
EcoO65I GGTNACC 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 841
EcoT14I CCWWGG 2 cut(s) 423, 813
EcoT38I GRGCYC 1 cut(s) 327
ErhI CCWWGG 2 cut(s) 423, 813
FaeI CATG 8 cut(s) 34, 70, 205, 251, 391, 766, 817, 957
FalI AAGNNNNNCTT 2 cut(s) 843, 875
FaqI GGGAC 2 cut(s) 366, 885
FatI CATG 8 cut(s) 30, 66, 201, 247, 387, 762, 813, 953
FbaI TGATCA 1 cut(s) 570
FblI GTMKAC 2 cut(s) 267, 921
Fnu4HI GCNGC 7 cut(s) 72, 337, 367, 612, 906, 909, 959
FokI GGATG 2 cut(s) 668, 791
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 7 cut(s) 72, 337, 367, 612, 906, 909, 959
FspBI CTAG 2 cut(s) 668, 912
FspI TGCGCA 1 cut(s) 340
GlaI GCGC 2 cut(s) 340, 580
GluI GCNGC 7 cut(s) 72, 337, 367, 612, 906, 909, 959
GsaI CCCAGC 1 cut(s) 261
HaeIII GGCC 7 cut(s) 15, 366, 586, 611, 825, 879, 958
HapII CCGG 5 cut(s) 303, 327, 410, 470, 822
HgaI GACGC 1 cut(s) 653
HhaI GCGC 2 cut(s) 341, 581
Hin1II CATG 8 cut(s) 34, 70, 205, 251, 391, 766, 817, 957
Hin6I GCGC 2 cut(s) 339, 579
HinP1I GCGC 2 cut(s) 339, 579
HincII GTYRAC 2 cut(s) 91, 922
HindII GTYRAC 2 cut(s) 91, 922
HinfI GANTC 1 cut(s) 1026
HpaI GTTAAC 1 cut(s) 91
HpaII CCGG 5 cut(s) 303, 327, 410, 470, 822
HphI GGTGA 4 cut(s) 250, 298, 317, 889
Hpy166II GTNNAC 8 cut(s) 91, 187, 268, 415, 442, 506, 526, 922
Hpy188I TCNGA 6 cut(s) 245, 435, 570, 772, 866, 941
Hpy188III TCNNGA 4 cut(s) 100, 196, 383, 554
Hpy8I GTNNAC 8 cut(s) 91, 187, 268, 415, 442, 506, 526, 922
Hpy99I CGWCG 2 cut(s) 926, 998
HpyAV CCTTC 4 cut(s) 52, 485, 796, 1030
HpyCH4III ACNGT 5 cut(s) 419, 565, 703, 889, 1019
HpyCH4IV ACGT 2 cut(s) 924, 996
HpyCH4V TGCA 5 cut(s) 24, 357, 442, 449, 1058
HpyF3I CTNAG 1 cut(s) 601
HpySE526I ACGT 2 cut(s) 924, 996
Hsp92II CATG 8 cut(s) 34, 70, 205, 251, 391, 766, 817, 957
HspAI GCGC 2 cut(s) 339, 579
Ksp22I TGATCA 1 cut(s) 570
KspAI GTTAAC 1 cut(s) 91
Kzo9I GATC 7 cut(s) 102, 240, 261, 451, 570, 765, 990
LmnI GCTCC 2 cut(s) 123, 279
Lsp1109I GCAGC 4 cut(s) 58, 323, 892, 895
LweI GCATC 2 cut(s) 301, 339
MaeI CTAG 2 cut(s) 668, 912
MaeII ACGT 2 cut(s) 924, 996
MaeIII GTNAC 2 cut(s) 305, 781
MalI GATC 7 cut(s) 104, 242, 263, 453, 572, 767, 992
MbiI CCGCTC 1 cut(s) 614
MboI GATC 7 cut(s) 102, 240, 261, 451, 570, 765, 990
MboII GAAGA 2 cut(s) 1000, 1058
MflI RGATCY 2 cut(s) 102, 451
MhlI GDGCHC 5 cut(s) 303, 327, 444, 631, 1069
MluCI AATT 5 cut(s) 147, 153, 636, 750, 1100
MmeI TCCRAC 2 cut(s) 844, 910
MroXI GAANNNNTTC 1 cut(s) 395
MseI TTAA 5 cut(s) 90, 156, 225, 462, 753
MslI CAYNNNNRTG 1 cut(s) 252
MspA1I CMGCKG 1 cut(s) 336
MspI CCGG 5 cut(s) 303, 327, 410, 470, 822
MspR9I CCNGG 3 cut(s) 303, 327, 843
MvaI CCWGG 1 cut(s) 843
NciI CCSGG 2 cut(s) 303, 327
NcoI CCATGG 1 cut(s) 813
NdeII GATC 7 cut(s) 102, 240, 261, 451, 570, 765, 990
NlaIII CATG 8 cut(s) 34, 70, 205, 251, 391, 766, 817, 957
NlaIV GGNNCC 3 cut(s) 300, 421, 630
NmuCI GTSAC 2 cut(s) 305, 781
NsbI TGCGCA 1 cut(s) 340
NspV TTCGAA 1 cut(s) 151
PaeR7I CTCGAG 1 cut(s) 968
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 1 cut(s) 1026
PflFI GACNNNGTC 1 cut(s) 701
PinAI ACCGGT 1 cut(s) 409
PkrI GCNGC 7 cut(s) 73, 338, 368, 613, 907, 910, 960
PshAI GACNNNNGTC 1 cut(s) 663
Psp6I CCWGG 1 cut(s) 841
PspEI GGTNACC 1 cut(s) 305
PspFI CCCAGC 1 cut(s) 257
PspGI CCWGG 1 cut(s) 841
PspN4I GGNNCC 3 cut(s) 300, 421, 630
PspPI GGNCC 3 cut(s) 131, 551, 584
PspXI VCTCGAGB 1 cut(s) 968
PstI CTGCAG 1 cut(s) 451
PsuI RGATCY 2 cut(s) 102, 451
PsyI GACNNNGTC 1 cut(s) 701
PvuII CAGCTG 1 cut(s) 336
RseI CAYNNNNRTG 1 cut(s) 252
SalI GTCGAC 1 cut(s) 920
SaqAI TTAA 5 cut(s) 90, 156, 225, 462, 753
SatI GCNGC 7 cut(s) 72, 337, 367, 612, 906, 909, 959
Sau3AI GATC 7 cut(s) 102, 240, 261, 451, 570, 765, 990
Sau96I GGNCC 3 cut(s) 131, 551, 584
ScrFI CCNGG 3 cut(s) 303, 327, 843
SduI GDGCHC 5 cut(s) 303, 327, 444, 631, 1069
SfaNI GCATC 2 cut(s) 301, 339
SfcI CTRYAG 1 cut(s) 447
Sfr274I CTCGAG 1 cut(s) 968
SfuI TTCGAA 1 cut(s) 151
SinI GGWCC 2 cut(s) 131, 551
SlaI CTCGAG 1 cut(s) 968
SmiMI CAYNNNNRTG 1 cut(s) 252
SmlI CTYRAG 3 cut(s) 194, 511, 968
SmoI CTYRAG 3 cut(s) 194, 511, 968
Sse9I AATT 5 cut(s) 147, 153, 636, 750, 1100
SsiI CCGC 8 cut(s) 174, 212, 317, 367, 612, 846, 959, 1004
SspMI CTAG 2 cut(s) 668, 912
StyD4I CCNGG 3 cut(s) 301, 325, 841
StyI CCWWGG 2 cut(s) 423, 813
TaaI ACNGT 5 cut(s) 419, 565, 703, 889, 1019
TaiI ACGT 2 cut(s) 927, 999
TaqI TCGA 5 cut(s) 151, 789, 921, 969, 993
TaqII GACCGA 2 cut(s) 148, 324
TasI AATT 5 cut(s) 147, 153, 636, 750, 1100
TauI GCSGC 3 cut(s) 369, 614, 961
TfiI GAWTC 1 cut(s) 1026
Tru1I TTAA 5 cut(s) 90, 156, 225, 462, 753
Tru9I TTAA 5 cut(s) 90, 156, 225, 462, 753
TscAI CASTG 3 cut(s) 359, 894, 1069
TseFI GTSAC 2 cut(s) 305, 781
TseI GCWGC 4 cut(s) 71, 336, 905, 908
Tsp45I GTSAC 2 cut(s) 305, 781
TspDTI ATGAA 3 cut(s) 218, 404, 753
TspGWI ACGGA 1 cut(s) 1046
TspRI CASTG 3 cut(s) 359, 894, 1069
Tth111I GACNNNGTC 1 cut(s) 701
VneI GTGCAC 1 cut(s) 440
VpaK11BI GGWCC 2 cut(s) 131, 551
XapI RAATTY 1 cut(s) 147
XcmI CCANNNNNNNNNTGG 1 cut(s) 23
XhoI CTCGAG 1 cut(s) 968
XmiI GTMKAC 2 cut(s) 267, 921
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 2 cut(s) 668, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.