MD01G1195300.v1.1

Sorbitol dehydrogenase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
29367235 .. 29368638
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1195300.v1.1.491

Sequence Viewer

Length: 1107 bp
ATGGGTAAGGGTGGGCAAAAGATTTATGGATTGGCTAAGAAAGCCAAACCTGTTCAGCAAGAAAACATGGCTGCTTATCTTGTTGATGTCAACACCATCAAGATCCTACCTTTCAAGCTCCCCAGTATCGGACCCAATGATGTCCGGATTCGGATTAAGGCGGTTGGTATTTGTGGAAGTGATGTTCACTACCTCAAGACCATGAAATGTGCGGATTTTGAGGTTAAAGAGCCGATGGTGATGGGACATGAGTGTGCTGGGATCGTAGACAAAGTTGGGAGCGAGGTGAAGCATCTGGTGCCTGGTGACCGGGTGGCGGTTGAGCCCGGTATCAGTTGCTCACGGTGTCAGCAGTGCAAAGGAGGGCAGTACAATCTTTGCCCCGACATGAAGTTTTTCGCCACCCCACCGGTTCATGGTTCCTTGGCAAATCAGATTGTGCATCCTGCGGATCTATGCTTCAAGCTGCCAGAGAATGTGAGCTTGGAGGAAGGGGCAATGTGCGAGCCCTTGAGTGTTGGAGTTCATGCATGTCGGCGAGCCAATGTTGGTCCCGAAACAACTGTTCTGATCATCGGAGCAGGGCCTATTGGTCTGGTTTCAGTTTTGGCCGCTCGTGCTTTCGGGGCACCAAGAATTGTCATTGTGGATATGGACGACAAGCGTTTAGCCATGGCAATGTCTCTCGGCGCTGATGGCACCGTCAAAGTTTCAACAAAAATGGAGGATTTGGATGACGAAGTTGCCAAGATTAAAGAAGCAATGGAATCCGAGGTGGATGTGACCTTTGATTGTGTGGGTTTTAATAAAACCATGTCGACGGGTCTCAACGCCACTCGCCCCGGCGGCAAAGTCTGCCTTGTCGGAATGGGACACGGCATGATGACAGTGCCTCTCACTCCAGCTGCTGCCAGGGAGGTTGATGTGGTTGGTGTTTTCCGGTACAAGAACACATGGCCACTTTGCCTCGAGTTTTTGAGAAGTGGGAAGATCGACGTGAAGCCGCTTATTACTCACCGGTTTGGATTTACCGAGAAGGAGGTGGAAGAAGCCTTTGCTACCAGTGCTCGTGGGGGTGACGCCATCAAAGTCATGTTTAATCTATAG

Protein Analysis

369

Amino Acids

39.52

Weight (kDa)

7.5

Isoelectric Point (pI)

25.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 44 - 158 5.9e-29 Alcohol dehydrogenase GroES-like domain
Glu_dehyd_C PF16912 165 - 294 7.5e-09 Glucose dehydrogenase C-terminus
ADH_zinc_N PF00107 196 - 326 1.6e-28 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 230 - 358 4.5e-07 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 298, 628, 698
AccBSI CCGCTC 1 cut(s) 614
AccI GTMKAC 2 cut(s) 267, 818
AccIII TCCGGA 1 cut(s) 144
AciI CCGC 7 cut(s) 161, 212, 317, 449, 612, 846, 1004
AclWI GGATC 3 cut(s) 97, 269, 459
AcoI YGGCCR 2 cut(s) 609, 956
AcyI GRCGYC 1 cut(s) 1080
AfaI GTAC 2 cut(s) 371, 944
AfiI CCNNNNNNNGG 3 cut(s) 128, 316, 416
AgeI ACCGGT 2 cut(s) 409, 1017
AgsI TTSAA 3 cut(s) 115, 463, 714
AjiI CACGTC 1 cut(s) 997
AjnI CCWGG 2 cut(s) 301, 911
AjuI GAANNNNNNNTTGG 2 cut(s) 467, 499
AloI GAACNNNNNNTCC 2 cut(s) 168, 200
AluBI AGCT 4 cut(s) 118, 466, 483, 905
AluI AGCT 4 cut(s) 118, 466, 483, 905
Alw21I GWGCWC 1 cut(s) 1069
Alw26I GTCTC 2 cut(s) 687, 830
AlwI GGATC 3 cut(s) 97, 269, 459
AlwNI CAGNNNCTG 1 cut(s) 908
Ama87I CYCGRG 1 cut(s) 968
Aor13HI TCCGGA 1 cut(s) 144
AoxI GGCC 3 cut(s) 584, 609, 956
ApeKI GCWGC 4 cut(s) 71, 466, 905, 908
AsiGI ACCGGT 2 cut(s) 409, 1017
Asp700I GAANNNNTTC 1 cut(s) 395
AspLEI GCGC 1 cut(s) 692
AspS9I GGNCC 3 cut(s) 131, 551, 584
AsuC2I CCSGG 3 cut(s) 311, 327, 843
AsuHPI GGTGA 5 cut(s) 250, 298, 317, 1007, 1088
AvaI CYCGRG 1 cut(s) 968
AvaII GGWCC 2 cut(s) 131, 551
BaeGI GKGCMC 1 cut(s) 631
BalI TGGCCA 1 cut(s) 958
BanI GGYRCC 3 cut(s) 298, 628, 698
BanII GRGCYC 2 cut(s) 327, 510
BauI CACGAG 2 cut(s) 615, 1068
Bbv12I GWGCWC 1 cut(s) 1069
BbvI GCAGC 4 cut(s) 58, 453, 892, 895
BccI CCATC 5 cut(s) 104, 229, 235, 689, 1091
BceAI ACGGC 1 cut(s) 892
BciT130I CCWGG 2 cut(s) 303, 913
BclI TGATCA 1 cut(s) 570
BcnI CCSGG 3 cut(s) 311, 327, 843
BcoDI GTCTC 2 cut(s) 687, 830
BfmI CTRYAG 1 cut(s) 1103
BfoI RGCGCY 1 cut(s) 693
BglI GCCNNNNNGGC 1 cut(s) 846
BisI GCNGC 7 cut(s) 72, 467, 612, 847, 906, 909, 1004
BlsI GCNGC 7 cut(s) 73, 468, 613, 848, 907, 910, 1005
Bme1390I CCNGG 5 cut(s) 303, 311, 327, 843, 913
Bme18I GGWCC 2 cut(s) 131, 551
BmeT110I CYCGRG 1 cut(s) 968
BmgBI CACGTC 1 cut(s) 997
BmgT120I GGNCC 3 cut(s) 131, 551, 584
BmiI GGNNCC 6 cut(s) 133, 300, 421, 553, 630, 700
BmrFI CCNGG 5 cut(s) 303, 311, 327, 843, 913
BmrI ACTGGG 1 cut(s) 117
BmsI GCATC 2 cut(s) 301, 451
BmuI ACTGGG 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 885
BpuEI CTTGAG 2 cut(s) 179, 532
BpuMI CCSGG 3 cut(s) 311, 327, 843
BsaHI GRCGYC 1 cut(s) 1080
BsaI GGTCTC 1 cut(s) 830
BsaJI CCNNGG 5 cut(s) 423, 672, 771, 841, 912
BsaWI WCCGGW 4 cut(s) 144, 409, 939, 1017
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 316, 416
Bse118I RCCGGY 2 cut(s) 409, 1017
Bse1I ACTGG 2 cut(s) 123, 1062
Bse3DI GCAATG 3 cut(s) 504, 684, 768
BseAI TCCGGA 1 cut(s) 144
BseBI CCWGG 2 cut(s) 303, 913
BseDI CCNNGG 5 cut(s) 423, 672, 771, 841, 912
BseGI GGATG 3 cut(s) 442, 739, 784
BseLI CCNNNNNNNGG 3 cut(s) 128, 316, 416
BseMI GCAATG 3 cut(s) 504, 684, 768
BseNI ACTGG 2 cut(s) 123, 1062
BseSI GKGCMC 1 cut(s) 631
BseXI GCAGC 4 cut(s) 58, 453, 892, 895
BseYI CCCAGC 1 cut(s) 257
BshFI GGCC 3 cut(s) 586, 611, 958
BshNI GGYRCC 3 cut(s) 298, 628, 698
BshTI ACCGGT 2 cut(s) 409, 1017
BsiHKAI GWGCWC 1 cut(s) 1069
BsiHKCI CYCGRG 1 cut(s) 968
BsiSI CCGG 7 cut(s) 145, 310, 327, 410, 843, 940, 1018
BslFI GGGAC 3 cut(s) 258, 537, 885
BslI CCNNNNNNNGG 3 cut(s) 128, 316, 416
BsmAI GTCTC 2 cut(s) 687, 830
BsmFI GGGAC 3 cut(s) 258, 537, 885
BsnI GGCC 3 cut(s) 586, 611, 958
Bso31I GGTCTC 1 cut(s) 830
BsoBI CYCGRG 1 cut(s) 968
Bsp1286I GDGCHC 4 cut(s) 327, 510, 631, 1069
Bsp13I TCCGGA 1 cut(s) 144
Bsp143I GATC 5 cut(s) 102, 261, 451, 570, 990
Bsp19I CCATGG 1 cut(s) 672
BspACI CCGC 7 cut(s) 161, 212, 317, 449, 612, 846, 1004
BspANI GGCC 3 cut(s) 586, 611, 958
BspEI TCCGGA 1 cut(s) 144
BspLI GGNNCC 6 cut(s) 133, 300, 421, 553, 630, 700
BspPI GGATC 3 cut(s) 97, 269, 459
BspT107I GGYRCC 3 cut(s) 298, 628, 698
BspTNI GGTCTC 1 cut(s) 830
BsrBI CCGCTC 1 cut(s) 614
BsrDI GCAATG 3 cut(s) 504, 684, 768
BsrFI RCCGGY 2 cut(s) 409, 1017
BsrI ACTGG 2 cut(s) 123, 1062
BssAI RCCGGY 2 cut(s) 409, 1017
BssECI CCNNGG 5 cut(s) 423, 672, 771, 841, 912
BssMI GATC 5 cut(s) 102, 261, 451, 570, 990
BssNI GRCGYC 1 cut(s) 1080
BssSI CACGAG 2 cut(s) 615, 1068
BssT1I CCWWGG 2 cut(s) 423, 672
Bst2BI CACGAG 2 cut(s) 615, 1068
Bst2UI CCWGG 2 cut(s) 303, 913
Bst4CI ACNGT 4 cut(s) 345, 565, 703, 889
BstACI GRCGYC 1 cut(s) 1080
BstAPI GCANNNNNTGC 2 cut(s) 298, 855
BstC8I GCNNGC 2 cut(s) 506, 540
BstDEI CTNAG 1 cut(s) 36
BstDSI CCRYGG 1 cut(s) 672
BstEII GGTNACC 1 cut(s) 305
BstF5I GGATG 3 cut(s) 442, 739, 784
BstH2I RGCGCY 1 cut(s) 693
BstHHI GCGC 1 cut(s) 692
BstKTI GATC 5 cut(s) 105, 264, 454, 573, 993
BstMAI GTCTC 2 cut(s) 687, 830
BstMBI GATC 5 cut(s) 102, 261, 451, 570, 990
BstMWI GCNNNNNNNGC 8 cut(s) 41, 298, 617, 626, 696, 846, 855, 1064
BstNI CCWGG 2 cut(s) 303, 913
BstNSI RCATGY 1 cut(s) 534
BstPI GGTNACC 1 cut(s) 305
BstSCI CCNGG 5 cut(s) 301, 309, 325, 841, 911
BstSFI CTRYAG 1 cut(s) 1103
BstSLI GKGCMC 1 cut(s) 631
BstV1I GCAGC 4 cut(s) 58, 453, 892, 895
BstX2I RGATCY 2 cut(s) 102, 451
BstYI RGATCY 2 cut(s) 102, 451
BsuRI GGCC 3 cut(s) 586, 611, 958
BtgI CCRYGG 1 cut(s) 672
BtrI CACGTC 1 cut(s) 997
BtsCI GGATG 3 cut(s) 442, 739, 784
BtsI GCAGTG 1 cut(s) 359
BtsIMutI CAGTG 3 cut(s) 359, 894, 1069
Cac8I GCNNGC 2 cut(s) 506, 540
CaiI CAGNNNCTG 1 cut(s) 908
CfoI GCGC 1 cut(s) 692
Cfr10I RCCGGY 2 cut(s) 409, 1017
Cfr13I GGNCC 3 cut(s) 131, 551, 584
CseI GACGC 1 cut(s) 1088
Csp6I GTAC 2 cut(s) 370, 943
CspAI ACCGGT 2 cut(s) 409, 1017
CviQI GTAC 2 cut(s) 370, 943
DdeI CTNAG 1 cut(s) 36
DpnI GATC 5 cut(s) 104, 263, 453, 572, 992
DpnII GATC 5 cut(s) 102, 261, 451, 570, 990
EaeI YGGCCR 2 cut(s) 609, 956
Eco130I CCWWGG 2 cut(s) 423, 672
Eco24I GRGCYC 2 cut(s) 327, 510
Eco31I GGTCTC 1 cut(s) 830
Eco47I GGWCC 2 cut(s) 131, 551
Eco88I CYCGRG 1 cut(s) 968
Eco91I GGTNACC 1 cut(s) 305
EcoO109I RGGNCCY 1 cut(s) 584
EcoO65I GGTNACC 1 cut(s) 305
EcoRII CCWGG 2 cut(s) 301, 911
EcoT14I CCWWGG 2 cut(s) 423, 672
EcoT22I ATGCAT 1 cut(s) 532
EcoT38I GRGCYC 2 cut(s) 327, 510
ErhI CCWWGG 2 cut(s) 423, 672
FalI AAGNNNNNCTT 2 cut(s) 843, 875
FaqI GGGAC 3 cut(s) 258, 537, 885
FbaI TGATCA 1 cut(s) 570
FblI GTMKAC 2 cut(s) 267, 818
Fnu4HI GCNGC 7 cut(s) 72, 467, 612, 847, 906, 909, 1004
FokI GGATG 3 cut(s) 429, 746, 791
FriOI GRGCYC 2 cut(s) 327, 510
Fsp4HI GCNGC 7 cut(s) 72, 467, 612, 847, 906, 909, 1004
GlaI GCGC 1 cut(s) 691
GluI GCNGC 7 cut(s) 72, 467, 612, 847, 906, 909, 1004
GsaI CCCAGC 1 cut(s) 261
GsuI CTGGAG 1 cut(s) 885
HaeII RGCGCY 1 cut(s) 693
HaeIII GGCC 3 cut(s) 586, 611, 958
HapII CCGG 7 cut(s) 145, 310, 327, 410, 843, 940, 1018
HgaI GACGC 1 cut(s) 1088
HhaI GCGC 1 cut(s) 692
Hin1I GRCGYC 1 cut(s) 1080
Hin6I GCGC 1 cut(s) 690
HinP1I GCGC 1 cut(s) 690
HincII GTYRAC 2 cut(s) 91, 819
HindII GTYRAC 2 cut(s) 91, 819
HinfI GANTC 2 cut(s) 148, 767
HpaII CCGG 7 cut(s) 145, 310, 327, 410, 843, 940, 1018
HphI GGTGA 5 cut(s) 250, 298, 317, 1007, 1088
Hpy166II GTNNAC 4 cut(s) 91, 187, 268, 819
Hpy188I TCNGA 7 cut(s) 131, 153, 435, 570, 578, 772, 866
Hpy188III TCNNGA 4 cut(s) 100, 145, 196, 554
Hpy8I GTNNAC 4 cut(s) 91, 187, 268, 819
Hpy99I CGWCG 2 cut(s) 823, 998
HpyAV CCTTC 2 cut(s) 485, 1030
HpyCH4III ACNGT 4 cut(s) 345, 565, 703, 889
HpyCH4IV ACGT 1 cut(s) 996
HpyCH4V TGCA 3 cut(s) 357, 442, 530
HpyF10VI GCNNNNNNNGC 8 cut(s) 41, 298, 617, 626, 696, 846, 855, 1064
HpyF3I CTNAG 1 cut(s) 36
HpySE526I ACGT 1 cut(s) 996
Hsp92I GRCGYC 1 cut(s) 1080
HspAI GCGC 1 cut(s) 690
Kpn2I TCCGGA 1 cut(s) 144
Ksp22I TGATCA 1 cut(s) 570
Kzo9I GATC 5 cut(s) 102, 261, 451, 570, 990
LmnI GCTCC 3 cut(s) 123, 279, 578
Lsp1109I GCAGC 4 cut(s) 58, 453, 892, 895
LweI GCATC 2 cut(s) 301, 451
MaeII ACGT 1 cut(s) 996
MaeIII GTNAC 3 cut(s) 305, 781, 1076
MalI GATC 5 cut(s) 104, 263, 453, 572, 992
MbiI CCGCTC 1 cut(s) 614
MboI GATC 5 cut(s) 102, 261, 451, 570, 990
MboII GAAGA 2 cut(s) 1000, 1058
MflI RGATCY 2 cut(s) 102, 451
MhlI GDGCHC 4 cut(s) 327, 510, 631, 1069
MlsI TGGCCA 1 cut(s) 958
MluCI AATT 1 cut(s) 636
MluNI TGGCCA 1 cut(s) 958
MmeI TCCRAC 2 cut(s) 499, 844
Mox20I TGGCCA 1 cut(s) 958
Mph1103I ATGCAT 1 cut(s) 532
MroI TCCGGA 1 cut(s) 144
MroXI GAANNNNTTC 1 cut(s) 395
MscI TGGCCA 1 cut(s) 958
MseI TTAA 5 cut(s) 156, 225, 753, 804, 1098
MslI CAYNNNNRTG 2 cut(s) 252, 677
Msp20I TGGCCA 1 cut(s) 958
MspA1I CMGCKG 1 cut(s) 905
MspI CCGG 7 cut(s) 145, 310, 327, 410, 843, 940, 1018
MspR9I CCNGG 5 cut(s) 303, 311, 327, 843, 913
MvaI CCWGG 2 cut(s) 303, 913
MwoI GCNNNNNNNGC 8 cut(s) 41, 298, 617, 626, 696, 846, 855, 1064
NciI CCSGG 3 cut(s) 311, 327, 843
NcoI CCATGG 1 cut(s) 672
NdeII GATC 5 cut(s) 102, 261, 451, 570, 990
NlaIV GGNNCC 6 cut(s) 133, 300, 421, 553, 630, 700
NmeAIII GCCGAG 1 cut(s) 666
NmuCI GTSAC 3 cut(s) 305, 781, 1076
NsiI ATGCAT 1 cut(s) 532
NspI RCATGY 1 cut(s) 534
PaeR7I CTCGAG 1 cut(s) 968
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 2 cut(s) 148, 767
PinAI ACCGGT 2 cut(s) 409, 1017
PkrI GCNGC 7 cut(s) 73, 468, 613, 848, 907, 910, 1005
Psp6I CCWGG 2 cut(s) 301, 911
PspEI GGTNACC 1 cut(s) 305
PspFI CCCAGC 1 cut(s) 257
PspGI CCWGG 2 cut(s) 301, 911
PspN4I GGNNCC 6 cut(s) 133, 300, 421, 553, 630, 700
PspPI GGNCC 3 cut(s) 131, 551, 584
PspXI VCTCGAGB 1 cut(s) 968
PstNI CAGNNNCTG 1 cut(s) 908
PsuI RGATCY 2 cut(s) 102, 451
PvuII CAGCTG 1 cut(s) 905
RsaI GTAC 2 cut(s) 371, 944
RsaNI GTAC 2 cut(s) 370, 943
RseI CAYNNNNRTG 2 cut(s) 252, 677
SalI GTCGAC 1 cut(s) 817
SaqAI TTAA 5 cut(s) 156, 225, 753, 804, 1098
SatI GCNGC 7 cut(s) 72, 467, 612, 847, 906, 909, 1004
Sau3AI GATC 5 cut(s) 102, 261, 451, 570, 990
Sau96I GGNCC 3 cut(s) 131, 551, 584
ScrFI CCNGG 5 cut(s) 303, 311, 327, 843, 913
SduI GDGCHC 4 cut(s) 327, 510, 631, 1069
SfaNI GCATC 2 cut(s) 301, 451
SfcI CTRYAG 1 cut(s) 1103
Sfr274I CTCGAG 1 cut(s) 968
SinI GGWCC 2 cut(s) 131, 551
SlaI CTCGAG 1 cut(s) 968
SmiMI CAYNNNNRTG 2 cut(s) 252, 677
SmlI CTYRAG 3 cut(s) 194, 511, 968
SmoI CTYRAG 3 cut(s) 194, 511, 968
Sse9I AATT 1 cut(s) 636
SsiI CCGC 7 cut(s) 161, 212, 317, 449, 612, 846, 1004
StyD4I CCNGG 5 cut(s) 301, 309, 325, 841, 911
StyI CCWWGG 2 cut(s) 423, 672
TaaI ACNGT 4 cut(s) 345, 565, 703, 889
TaiI ACGT 1 cut(s) 999
TaqI TCGA 3 cut(s) 818, 969, 993
TasI AATT 1 cut(s) 636
TatI WGTACW 1 cut(s) 369
TauI GCSGC 3 cut(s) 614, 849, 1006
TfiI GAWTC 2 cut(s) 148, 767
Tru1I TTAA 5 cut(s) 156, 225, 753, 804, 1098
Tru9I TTAA 5 cut(s) 156, 225, 753, 804, 1098
TscAI CASTG 3 cut(s) 359, 894, 1069
TseFI GTSAC 3 cut(s) 305, 781, 1076
TseI GCWGC 4 cut(s) 71, 466, 905, 908
Tsp45I GTSAC 3 cut(s) 305, 781, 1076
TspDTI ATGAA 4 cut(s) 218, 404, 404, 515
TspRI CASTG 3 cut(s) 359, 894, 1069
VpaK11BI GGWCC 2 cut(s) 131, 551
XceI RCATGY 1 cut(s) 534
XhoI CTCGAG 1 cut(s) 968
XmiI GTMKAC 2 cut(s) 267, 818
XmnI GAANNNNTTC 1 cut(s) 395
Zsp2I ATGCAT 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.