MD00G1005700.v1.1

Sorbitol dehydrogenase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
814503 .. 816299
1797 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1005700.v1.1.491

Sequence Viewer

Length: 1107 bp
ATGGGCAAGGGAGGCCAATCCTGCAATGGCATGGTTAGACAAGCCAAACCTGTTGAGCAGGAAAACATGGCTGCTTGGCTTGTTGATGTCAACACCATCAAGATCCTACCTTTCAAGCTCCCCAGTATCGGACCCAATGATGTTCGAATTCGGATCAAGGCTGTCGGCATTTGTGGAAGTGATGTTCACTACCTCAAGACCATGAAATGCGCGGATTTTGAGGTTAAAGAGCCAATGGTAATCGGACATGAGTGTGCCGGGATCGTAGACAAAGTTGGGAGCGAGGTGAAGCATTTGGTGCCTGGTGACCGCGTGGCGGTAGAGCCTGGCATCAGCTGCGCACGGTGCCAGCAGTGCAAGGGAGGCCGCTATAATCTTTGCCCTGATATGAAGTTTTTCGCCACCCCACCGGTTCATGGTTCCTTGGCTAATCAGATTGTGCACCCTGCGGATCTGTGCTTTAAATTGCCGGAAAACGTGAGTTTGGAGGAAGGGGCAATGTGTGAGCCCTTGAGTGTTGGGGTTCACGCTTGTCGGCGAGCCAATGTTGGTCCCGAGACAACTGTCCTGATCATCGGAGCAGGGCCTATTGGTCTCGTTTCAGTTTTAGCCGCTCGTGCTTTCGGGGCACCAAGAATTGTGATTGTGGATATGGATGACAAGCGTCTAGCAATGGCAAAGTCTCTCGGTGCTGATGAAGCCGTGAAAGTTTCGACAAAAATGGAGGATTTAGATGATGAAGTTGCCGAAATTAAAAAAGCCATGATCTCCGAAGTGGATGTGACCTTCGATTGTGTGGGTTTCAACAAAACCATGTCGACCGGCCTCAATGCTACTCGTCCCGGCGGAAAAGTCTGCCTTGTAGGAATGGGACACGGTGTGATGACGGTGCCTCTGACTCCCGCTGCTGCTAGGGAGGTTGACGTTGTTGGAGTTTTCCGATACCAGAACACATGGCCGCTTTGCCTCGAGTTTTTGAGAAGTGGGAAGATTGACGTGAAGCCGCTTATCACACACCGTTTTGGATTTACTGAGAAGGAGGTGGAAGAAGCGTTTGCAACAAGTGCTCGTGGGGGTAATGCCATCAAGGTGATGTTCAAATTGTAA

Protein Analysis

369

Amino Acids

39.52

Weight (kDa)

7.49

Isoelectric Point (pI)

25.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 44 - 158 8.2e-29 Alcohol dehydrogenase GroES-like domain
Glu_dehyd_C PF16912 165 - 293 5.3e-09 Glucose dehydrogenase C-terminus
ADH_zinc_N PF00107 196 - 326 7.8e-29 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 229 - 359 1.7e-07 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 340
AccB1I GGYRCC 4 cut(s) 298, 345, 628, 889
AccBSI CCGCTC 1 cut(s) 614
AccI GTMKAC 2 cut(s) 267, 818
AccII CGCG 2 cut(s) 212, 312
AclWI GGATC 4 cut(s) 97, 161, 269, 459
AcoI YGGCCR 1 cut(s) 956
AcsI RAATTY 1 cut(s) 147
AdeI CACNNNGTG 1 cut(s) 880
AfiI CCNNNNNNNGG 3 cut(s) 128, 316, 416
AgeI ACCGGT 1 cut(s) 409
AgsI TTSAA 3 cut(s) 115, 805, 1099
AjiI CACGTC 1 cut(s) 997
AjnI CCWGG 2 cut(s) 301, 325
AloI GAACNNNNNNTCC 2 cut(s) 168, 200
AluBI AGCT 2 cut(s) 118, 336
AluI AGCT 2 cut(s) 118, 336
Alw21I GWGCWC 2 cut(s) 444, 1069
Alw26I GTCTC 3 cut(s) 551, 599, 687
Alw44I GTGCAC 1 cut(s) 440
AlwI GGATC 4 cut(s) 97, 161, 269, 459
Ama87I CYCGRG 2 cut(s) 554, 968
AoxI GGCC 5 cut(s) 13, 364, 584, 823, 956
ApaLI GTGCAC 1 cut(s) 440
ApeKI GCWGC 4 cut(s) 71, 336, 905, 908
ApoI RAATTY 1 cut(s) 147
AsiGI ACCGGT 1 cut(s) 409
Asp700I GAANNNNTTC 1 cut(s) 395
AspLEI GCGC 2 cut(s) 212, 341
AspS9I GGNCC 3 cut(s) 131, 551, 584
AsuC2I CCSGG 2 cut(s) 259, 843
AsuHPI GGTGA 3 cut(s) 298, 317, 1102
AsuII TTCGAA 1 cut(s) 145
AvaI CYCGRG 2 cut(s) 554, 968
AvaII GGWCC 2 cut(s) 131, 551
BaeGI GKGCMC 2 cut(s) 444, 631
BanI GGYRCC 4 cut(s) 298, 345, 628, 889
BanII GRGCYC 1 cut(s) 510
BauI CACGAG 2 cut(s) 615, 1068
Bbv12I GWGCWC 2 cut(s) 444, 1069
BbvI GCAGC 4 cut(s) 58, 323, 892, 895
BccI CCATC 2 cut(s) 104, 1091
BceAI ACGGC 1 cut(s) 686
BciT130I CCWGG 2 cut(s) 303, 327
BclI TGATCA 1 cut(s) 570
BcnI CCSGG 2 cut(s) 259, 843
BcoDI GTCTC 3 cut(s) 551, 599, 687
BfaI CTAG 2 cut(s) 668, 912
BisI GCNGC 8 cut(s) 72, 337, 367, 612, 906, 909, 959, 1004
BlsI GCNGC 8 cut(s) 73, 338, 368, 613, 907, 910, 960, 1005
Bme1390I CCNGG 4 cut(s) 259, 303, 327, 843
Bme18I GGWCC 2 cut(s) 131, 551
BmeT110I CYCGRG 2 cut(s) 554, 968
BmgBI CACGTC 1 cut(s) 997
BmgT120I GGNCC 3 cut(s) 131, 551, 584
BmiI GGNNCC 7 cut(s) 133, 300, 347, 421, 553, 630, 891
BmrFI CCNGG 4 cut(s) 259, 303, 327, 843
BmrI ACTGGG 1 cut(s) 117
BmsI GCATC 1 cut(s) 339
BmuI ACTGGG 1 cut(s) 117
BoxI GACNNNNGTC 2 cut(s) 563, 663
Bpu14I TTCGAA 1 cut(s) 145
BpuEI CTTGAG 2 cut(s) 179, 532
BpuMI CCSGG 2 cut(s) 259, 843
BsaI GGTCTC 1 cut(s) 599
BsaJI CCNNGG 1 cut(s) 423
BsaWI WCCGGW 1 cut(s) 409
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 316, 416
Bse118I RCCGGY 2 cut(s) 409, 821
Bse1I ACTGG 1 cut(s) 123
Bse3DI GCAATG 3 cut(s) 31, 504, 678
BseBI CCWGG 2 cut(s) 303, 327
BseDI CCNNGG 1 cut(s) 423
BseGI GGATG 2 cut(s) 661, 784
BseLI CCNNNNNNNGG 3 cut(s) 128, 316, 416
BseMI GCAATG 3 cut(s) 31, 504, 678
BseMII CTCAG 1 cut(s) 1023
BseNI ACTGG 1 cut(s) 123
BseSI GKGCMC 2 cut(s) 444, 631
BseXI GCAGC 4 cut(s) 58, 323, 892, 895
Bsh1236I CGCG 2 cut(s) 212, 312
Bsh1285I CGRYCG 1 cut(s) 822
BshFI GGCC 5 cut(s) 15, 366, 586, 825, 958
BshNI GGYRCC 4 cut(s) 298, 345, 628, 889
BshTI ACCGGT 1 cut(s) 409
BsiEI CGRYCG 1 cut(s) 822
BsiHKAI GWGCWC 2 cut(s) 444, 1069
BsiHKCI CYCGRG 2 cut(s) 554, 968
BsiSI CCGG 5 cut(s) 258, 410, 470, 822, 843
BslFI GGGAC 3 cut(s) 537, 825, 885
BslI CCNNNNNNNGG 3 cut(s) 128, 316, 416
BsmAI GTCTC 3 cut(s) 551, 599, 687
BsmFI GGGAC 3 cut(s) 537, 825, 885
BsnI GGCC 5 cut(s) 15, 366, 586, 825, 958
Bso31I GGTCTC 1 cut(s) 599
BsoBI CYCGRG 2 cut(s) 554, 968
Bsp119I TTCGAA 1 cut(s) 145
Bsp1286I GDGCHC 4 cut(s) 444, 510, 631, 1069
Bsp143I GATC 6 cut(s) 102, 153, 261, 451, 570, 765
BspANI GGCC 5 cut(s) 15, 366, 586, 825, 958
BspCNI CTCAG 1 cut(s) 1024
BspFNI CGCG 2 cut(s) 212, 312
BspLI GGNNCC 7 cut(s) 133, 300, 347, 421, 553, 630, 891
BspPI GGATC 4 cut(s) 97, 161, 269, 459
BspT104I TTCGAA 1 cut(s) 145
BspT107I GGYRCC 4 cut(s) 298, 345, 628, 889
BspTNI GGTCTC 1 cut(s) 599
BsrBI CCGCTC 1 cut(s) 614
BsrDI GCAATG 3 cut(s) 31, 504, 678
BsrFI RCCGGY 2 cut(s) 409, 821
BsrI ACTGG 1 cut(s) 123
BssAI RCCGGY 2 cut(s) 409, 821
BssECI CCNNGG 1 cut(s) 423
BssMI GATC 6 cut(s) 102, 153, 261, 451, 570, 765
BssSI CACGAG 2 cut(s) 615, 1068
BssT1I CCWWGG 1 cut(s) 423
Bst2BI CACGAG 2 cut(s) 615, 1068
Bst2UI CCWGG 2 cut(s) 303, 327
Bst4CI ACNGT 5 cut(s) 345, 565, 878, 889, 1019
BstAPI GCANNNNNTGC 3 cut(s) 298, 336, 1064
BstBI TTCGAA 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 350, 540
BstDEI CTNAG 1 cut(s) 1032
BstEII GGTNACC 1 cut(s) 305
BstF5I GGATG 2 cut(s) 661, 784
BstFNI CGCG 2 cut(s) 212, 312
BstHHI GCGC 2 cut(s) 212, 341
BstKTI GATC 6 cut(s) 105, 156, 264, 454, 573, 768
BstMAI GTCTC 3 cut(s) 551, 599, 687
BstMBI GATC 6 cut(s) 102, 153, 261, 451, 570, 765
BstMCI CGRYCG 1 cut(s) 822
BstNI CCWGG 2 cut(s) 303, 327
BstPAI GACNNNNGTC 2 cut(s) 563, 663
BstPI GGTNACC 1 cut(s) 305
BstSCI CCNGG 4 cut(s) 257, 301, 325, 841
BstSLI GKGCMC 2 cut(s) 444, 631
BstUI CGCG 2 cut(s) 212, 312
BstV1I GCAGC 4 cut(s) 58, 323, 892, 895
BstX2I RGATCY 2 cut(s) 102, 451
BstYI RGATCY 2 cut(s) 102, 451
BsuRI GGCC 5 cut(s) 15, 366, 586, 825, 958
BtrI CACGTC 1 cut(s) 997
BtsCI GGATG 2 cut(s) 661, 784
BtsI GCAGTG 1 cut(s) 359
BtsIMutI CAGTG 1 cut(s) 359
Cac8I GCNNGC 2 cut(s) 350, 540
CfoI GCGC 2 cut(s) 212, 341
Cfr10I RCCGGY 2 cut(s) 409, 821
Cfr13I GGNCC 3 cut(s) 131, 551, 584
CseI GACGC 1 cut(s) 653
CspAI ACCGGT 1 cut(s) 409
CviAII CATG 8 cut(s) 31, 67, 202, 248, 416, 763, 814, 954
DdeI CTNAG 1 cut(s) 1032
DpnI GATC 6 cut(s) 104, 155, 263, 453, 572, 767
DpnII GATC 6 cut(s) 102, 153, 261, 451, 570, 765
DraI TTTAAA 1 cut(s) 463
DraIII CACNNNGTG 1 cut(s) 880
EaeI YGGCCR 1 cut(s) 956
EciI GGCGGA 1 cut(s) 861
Eco130I CCWWGG 1 cut(s) 423
Eco24I GRGCYC 1 cut(s) 510
Eco31I GGTCTC 1 cut(s) 599
Eco47I GGWCC 2 cut(s) 131, 551
Eco88I CYCGRG 2 cut(s) 554, 968
Eco91I GGTNACC 1 cut(s) 305
EcoO109I RGGNCCY 1 cut(s) 584
EcoO65I GGTNACC 1 cut(s) 305
EcoRI GAATTC 1 cut(s) 147
EcoRII CCWGG 2 cut(s) 301, 325
EcoT14I CCWWGG 1 cut(s) 423
EcoT38I GRGCYC 1 cut(s) 510
ErhI CCWWGG 1 cut(s) 423
FaeI CATG 8 cut(s) 34, 70, 205, 251, 419, 766, 817, 957
FalI AAGNNNNNCTT 2 cut(s) 843, 875
FaqI GGGAC 3 cut(s) 537, 825, 885
FatI CATG 8 cut(s) 30, 66, 201, 247, 415, 762, 813, 953
FauI CCCGC 1 cut(s) 910
FbaI TGATCA 1 cut(s) 570
FblI GTMKAC 2 cut(s) 267, 818
Fnu4HI GCNGC 8 cut(s) 72, 337, 367, 612, 906, 909, 959, 1004
FokI GGATG 2 cut(s) 668, 791
FriOI GRGCYC 1 cut(s) 510
Fsp4HI GCNGC 8 cut(s) 72, 337, 367, 612, 906, 909, 959, 1004
FspBI CTAG 2 cut(s) 668, 912
FspI TGCGCA 1 cut(s) 340
GlaI GCGC 2 cut(s) 211, 340
GluI GCNGC 8 cut(s) 72, 337, 367, 612, 906, 909, 959, 1004
HaeIII GGCC 5 cut(s) 15, 366, 586, 825, 958
HapII CCGG 5 cut(s) 258, 410, 470, 822, 843
HgaI GACGC 1 cut(s) 653
HhaI GCGC 2 cut(s) 212, 341
Hin1II CATG 8 cut(s) 34, 70, 205, 251, 419, 766, 817, 957
Hin6I GCGC 2 cut(s) 210, 339
HinP1I GCGC 2 cut(s) 210, 339
HincII GTYRAC 3 cut(s) 91, 819, 922
HindII GTYRAC 3 cut(s) 91, 819, 922
HinfI GANTC 1 cut(s) 898
HpaII CCGG 5 cut(s) 258, 410, 470, 822, 843
HphI GGTGA 3 cut(s) 298, 317, 1102
Hpy166II GTNNAC 7 cut(s) 91, 187, 268, 442, 526, 819, 922
Hpy188I TCNGA 8 cut(s) 131, 153, 245, 435, 578, 772, 897, 941
Hpy188III TCNNGA 4 cut(s) 100, 196, 554, 568
Hpy8I GTNNAC 7 cut(s) 91, 187, 268, 442, 526, 819, 922
HpyAV CCTTC 3 cut(s) 485, 796, 1030
HpyCH4III ACNGT 5 cut(s) 345, 565, 878, 889, 1019
HpyCH4IV ACGT 3 cut(s) 477, 924, 996
HpyCH4V TGCA 4 cut(s) 24, 357, 442, 1058
HpyF3I CTNAG 1 cut(s) 1032
HpySE526I ACGT 3 cut(s) 477, 924, 996
Hsp92II CATG 8 cut(s) 34, 70, 205, 251, 419, 766, 817, 957
HspAI GCGC 2 cut(s) 210, 339
Ksp22I TGATCA 1 cut(s) 570
Kzo9I GATC 6 cut(s) 102, 153, 261, 451, 570, 765
LmnI GCTCC 3 cut(s) 123, 279, 578
Lsp1109I GCAGC 4 cut(s) 58, 323, 892, 895
LweI GCATC 1 cut(s) 339
MaeI CTAG 2 cut(s) 668, 912
MaeII ACGT 3 cut(s) 477, 924, 996
MaeIII GTNAC 2 cut(s) 305, 781
MalI GATC 6 cut(s) 104, 155, 263, 453, 572, 767
MbiI CCGCTC 1 cut(s) 614
MboI GATC 6 cut(s) 102, 153, 261, 451, 570, 765
MboII GAAGA 2 cut(s) 1000, 1058
MflI RGATCY 2 cut(s) 102, 451
MhlI GDGCHC 4 cut(s) 444, 510, 631, 1069
MluCI AATT 5 cut(s) 147, 464, 636, 750, 1100
MlyI GAGTC 1 cut(s) 892
MmeI TCCRAC 1 cut(s) 910
MroXI GAANNNNTTC 1 cut(s) 395
MseI TTAA 3 cut(s) 225, 462, 753
MslI CAYNNNNRTG 2 cut(s) 252, 1088
MspA1I CMGCKG 2 cut(s) 336, 905
MspI CCGG 5 cut(s) 258, 410, 470, 822, 843
MspR9I CCNGG 4 cut(s) 259, 303, 327, 843
MvaI CCWGG 2 cut(s) 303, 327
MvnI CGCG 2 cut(s) 212, 312
NciI CCSGG 2 cut(s) 259, 843
NdeII GATC 6 cut(s) 102, 153, 261, 451, 570, 765
NlaIII CATG 8 cut(s) 34, 70, 205, 251, 419, 766, 817, 957
NlaIV GGNNCC 7 cut(s) 133, 300, 347, 421, 553, 630, 891
NmuCI GTSAC 2 cut(s) 305, 781
NsbI TGCGCA 1 cut(s) 340
NspV TTCGAA 1 cut(s) 145
PaeR7I CTCGAG 1 cut(s) 968
PdmI GAANNNNTTC 1 cut(s) 395
PinAI ACCGGT 1 cut(s) 409
PkrI GCNGC 8 cut(s) 73, 338, 368, 613, 907, 910, 960, 1005
PleI GAGTC 1 cut(s) 892
PpsI GAGTC 1 cut(s) 892
PshAI GACNNNNGTC 2 cut(s) 563, 663
Psp6I CCWGG 2 cut(s) 301, 325
PspEI GGTNACC 1 cut(s) 305
PspGI CCWGG 2 cut(s) 301, 325
PspN4I GGNNCC 7 cut(s) 133, 300, 347, 421, 553, 630, 891
PspPI GGNCC 3 cut(s) 131, 551, 584
PspXI VCTCGAGB 1 cut(s) 968
PsuI RGATCY 2 cut(s) 102, 451
PvuII CAGCTG 1 cut(s) 336
RseI CAYNNNNRTG 2 cut(s) 252, 1088
SalI GTCGAC 1 cut(s) 817
SaqAI TTAA 3 cut(s) 225, 462, 753
SatI GCNGC 8 cut(s) 72, 337, 367, 612, 906, 909, 959, 1004
Sau3AI GATC 6 cut(s) 102, 153, 261, 451, 570, 765
Sau96I GGNCC 3 cut(s) 131, 551, 584
SchI GAGTC 1 cut(s) 892
ScrFI CCNGG 4 cut(s) 259, 303, 327, 843
SduI GDGCHC 4 cut(s) 444, 510, 631, 1069
SfaNI GCATC 1 cut(s) 339
Sfr274I CTCGAG 1 cut(s) 968
SfuI TTCGAA 1 cut(s) 145
SinI GGWCC 2 cut(s) 131, 551
SlaI CTCGAG 1 cut(s) 968
SmiMI CAYNNNNRTG 2 cut(s) 252, 1088
SmlI CTYRAG 3 cut(s) 194, 511, 968
SmoI CTYRAG 3 cut(s) 194, 511, 968
Sse9I AATT 5 cut(s) 147, 464, 636, 750, 1100
SspMI CTAG 2 cut(s) 668, 912
StyD4I CCNGG 4 cut(s) 257, 301, 325, 841
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 5 cut(s) 345, 565, 878, 889, 1019
TaiI ACGT 3 cut(s) 480, 927, 999
TaqI TCGA 5 cut(s) 145, 713, 789, 818, 969
TasI AATT 5 cut(s) 147, 464, 636, 750, 1100
TauI GCSGC 4 cut(s) 369, 614, 961, 1006
Tru1I TTAA 3 cut(s) 225, 462, 753
Tru9I TTAA 3 cut(s) 225, 462, 753
TscAI CASTG 1 cut(s) 359
TseFI GTSAC 2 cut(s) 305, 781
TseI GCWGC 4 cut(s) 71, 336, 905, 908
Tsp45I GTSAC 2 cut(s) 305, 781
TspDTI ATGAA 5 cut(s) 218, 404, 404, 711, 753
TspRI CASTG 1 cut(s) 359
VneI GTGCAC 1 cut(s) 440
VpaK11BI GGWCC 2 cut(s) 131, 551
XapI RAATTY 1 cut(s) 147
XcmI CCANNNNNNNNNTGG 1 cut(s) 23
XhoI CTCGAG 1 cut(s) 968
XmiI GTMKAC 2 cut(s) 267, 818
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 2 cut(s) 668, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.