Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001681

Physical Location & Seq

Genomic Coordinates Forward (+)

21329717 .. 21332473

Gene Structure 2757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGGAAAGGGAGGGATGTCACATGGAGATGACCAACAAGAGAACATGGCTGCTTGGCTTGTTGGTATCAACACCCTCAAGATTCAACCTTTCAAGCTCCCTGAACTTGGACCTCATGATGTAAGGATTCGGATGAAGGCTGTTGGGATATGTGGGAGTGATGTTCACTACCTCAAGGCCATGAGAGTTGCAGATTTTATTGTTAAAGAGCCAATGGTAATTGGGCATGAGTGTGCTGGGATCATAGAGGAAATTGGAAGTGAGGTGAAGCATCTGGTACCTGGTGACCGTGTGGCACTAGAGCCCGGTATCAGTTGCTGGAGGTGTGAATCTTGCAAAGAAGGTCGATACAATCTATGCCCGGATATGAAGTTTTTTGCTACTCCACCGGTTCATGGTTCACTGGCAAACCAGGTTGTCCATCCTGCAGACCTGTGTTTTAAACTTCCAGAGAATGTGAGTTTGGAAGAAGGGGCAATGTGTGAGCCCTTGAGTGTTGGTGTTCATGCCTGTCGCCGAGCTAATGTTGGTCCAGAAACAAATGTTTTGGTCATGGGAGCAGGACCCATAGGGCTTGTTGCACTGCTAGCTGGTCGTGCTTTTGGGGCACCGAGAATTGTCATTGCAGATGTGGATGACTATCGTTTATCAGTTGCAAAGACTCTAGGTGCAGATGAGATCATAAAAGTTTCAACAAACATCCAGGTTTCAATATTTGATGTCCTAAATTCACTACCATCATCCAGACTGGTTTGCAAACTTTATTGTCACTTTGTTGTATTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003939 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0008150 GO:0008152 GO:0009506 GO:0016491 GO:0016614 GO:0016616 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00040 ko00051 ko01100 map00040 map00051 map01100

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

263

Amino Acids

28.31

Weight (kDa)

6.14

Isoelectric Point (pI)

32.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	37 - 151	4.5e-29	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	189 - 232	1.9e-06	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51970 AT5G51970
fragaria_vesca	FvH4_7g28870 FvH4_7g28870
malus_domestica	MD00G1005600.v1.1 MD00G1005700.v1.1 MD01G1110100.v1.1 MD01G1194600.v1.1 MD01G1194700.v1.1 MD01G1195200.v1.1 MD01G1195300.v1.1 MD01G1195400.v1.1 MD01G1195500.v1.1 MD07G1261900.v1.1 MD07G1262100.v1.1 MD07G1262300.v1.1
prunus_persica	Prupe.2G288800_v2.0.a1 Prupe.2G288800_v2.0.a1 Prupe.4G240300_v2.0.a1 Prupe.4G240300_v2.0.a1 Prupe.8G142900_v2.0.a1 Prupe.8G143000_v2.0.a1
pyrus_communis	pycom01g13720 pycom01g20540 pycom01g20550 pycom01g20560 pycom01g20580 pycom01g20600 pycom01g20610 pycom07g24070 pycom07g24080 pycom07g24090 pycom07g24100 pycom07g24130
rosa_chinensis	RchiOBHm_Chr1g0376551
rosa_laevigata	RLG00000026602
rosa_multiflora	Rmu_sc0001308.1_g000011 Rmu_sc0005594.1_g000014
rosa_roxburghii	Rroxscaffold_4G00282010 Rroxscaffold_4G00282130
rosa_rugosa	Rorug01G0396500
rosa_samantha	Rh1AG407600 Rh1AG412800 Rh1BG372300 Rh1CG385100 Rh1CG386100 Rh1DG402100 Rh1DG403200
rosa_wichuraiana	Rw1G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	277
AccB1I	GGYRCC	2 cut(s)	277, 607
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	1 cut(s)	727
AfaI	GTAC	1 cut(s)	279
AfiI	CCNNNNNNNGG	2 cut(s)	107, 395
AgeI	ACCGGT	1 cut(s)	388
AgsI	TTSAA	4 cut(s)	86, 94, 693, 711
AjnI	CCWGG	3 cut(s)	280, 411, 702
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AluBI	AGCT	3 cut(s)	97, 521, 590
AluI	AGCT	3 cut(s)	97, 521, 590
AlwI	GGATC	1 cut(s)	248
AlwNI	CAGNNNCTG	1 cut(s)	318
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	727
AsiGI	ACCGGT	1 cut(s)	388
Asp718I	GGTACC	1 cut(s)	277
AspS9I	GGNCC	3 cut(s)	110, 530, 563
AsuC2I	CCSGG	2 cut(s)	306, 362
AsuHPI	GGTGA	2 cut(s)	277, 296
AsuNHI	GCTAGC	1 cut(s)	586
AvaII	GGWCC	3 cut(s)	110, 530, 563
BaeGI	GKGCMC	1 cut(s)	610
BanI	GGYRCC	2 cut(s)	277, 607
BanII	GRGCYC	2 cut(s)	306, 489
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	2 cut(s)	429, 745
BciT130I	CCWGG	3 cut(s)	282, 413, 704
BcnI	CCSGG	2 cut(s)	306, 362
BfaI	CTAG	3 cut(s)	299, 587, 665
BfmI	CTRYAG	1 cut(s)	426
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	5 cut(s)	282, 306, 362, 413, 704
Bme18I	GGWCC	3 cut(s)	110, 530, 563
BmgT120I	GGNCC	3 cut(s)	110, 530, 563
BmiI	GGNNCC	3 cut(s)	279, 565, 609
BmrFI	CCNGG	5 cut(s)	282, 306, 362, 413, 704
BmsI	GCATC	1 cut(s)	280
BmtI	GCTAGC	1 cut(s)	590
BpmI	CTGGAG	1 cut(s)	340
BpuEI	CTTGAG	3 cut(s)	62, 158, 511
BpuMI	CCSGG	2 cut(s)	306, 362
BsaBI	GATNNNNATC	1 cut(s)	639
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 395
Bse118I	RCCGGY	1 cut(s)	388
Bse1I	ACTGG	2 cut(s)	408, 753
Bse3DI	GCAATG	2 cut(s)	483, 621
Bse8I	GATNNNNATC	1 cut(s)	639
BseBI	CCWGG	3 cut(s)	282, 413, 704
BseGI	GGATG	6 cut(s)	21, 138, 421, 640, 699, 740
BseJI	GATNNNNATC	1 cut(s)	639
BseLI	CCNNNNNNNGG	2 cut(s)	107, 395
BseMI	GCAATG	2 cut(s)	483, 621
BseNI	ACTGG	2 cut(s)	408, 753
BseSI	GKGCMC	1 cut(s)	610
BseXI	GCAGC	1 cut(s)	37
BseYI	CCCAGC	1 cut(s)	236
BsgI	GTGCAG	1 cut(s)	690
BshFI	GGCC	1 cut(s)	179
BshNI	GGYRCC	2 cut(s)	277, 607
BshTI	ACCGGT	1 cut(s)	388
BsiSI	CCGG	3 cut(s)	306, 362, 389
BslI	CCNNNNNNNGG	2 cut(s)	107, 395
BsnI	GGCC	1 cut(s)	179
Bsp1286I	GDGCHC	3 cut(s)	306, 489, 610
Bsp143I	GATC	2 cut(s)	240, 678
BspANI	GGCC	1 cut(s)	179
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	3 cut(s)	279, 565, 609
BspMAI	CTGCAG	1 cut(s)	430
BspOI	GCTAGC	1 cut(s)	590
BspPI	GGATC	1 cut(s)	248
BspT107I	GGYRCC	2 cut(s)	277, 607
BsrDI	GCAATG	2 cut(s)	483, 621
BsrFI	RCCGGY	1 cut(s)	388
BsrI	ACTGG	2 cut(s)	408, 753
BssAI	RCCGGY	1 cut(s)	388
BssMI	GATC	2 cut(s)	240, 678
Bst2UI	CCWGG	3 cut(s)	282, 413, 704
Bst4CI	ACNGT	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	588
BstEII	GGTNACC	1 cut(s)	284
BstF5I	GGATG	6 cut(s)	21, 138, 421, 640, 699, 740
BstKTI	GATC	2 cut(s)	243, 681
BstMBI	GATC	2 cut(s)	240, 678
BstMWI	GCNNNNNNNGC	3 cut(s)	587, 596, 605
BstNI	CCWGG	3 cut(s)	282, 413, 704
BstPI	GGTNACC	1 cut(s)	284
BstSCI	CCNGG	5 cut(s)	280, 304, 360, 411, 702
BstSFI	CTRYAG	1 cut(s)	426
BstSLI	GKGCMC	1 cut(s)	610
BstV1I	GCAGC	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	179
BtsCI	GGATG	6 cut(s)	21, 138, 421, 640, 699, 740
BtsI	GCAGTG	1 cut(s)	581
BtsIMutI	CAGTG	2 cut(s)	401, 581
Cac8I	GCNNGC	1 cut(s)	588
CaiI	CAGNNNCTG	1 cut(s)	318
CciI	TCATGA	1 cut(s)	115
Cfr10I	RCCGGY	1 cut(s)	388
Cfr13I	GGNCC	3 cut(s)	110, 530, 563
CsiI	ACCWGGT	2 cut(s)	280, 411
Csp6I	GTAC	1 cut(s)	278
CspAI	ACCGGT	1 cut(s)	388
CviAII	CATG	8 cut(s)	23, 46, 116, 181, 227, 395, 506, 553
CviQI	GTAC	1 cut(s)	278
DpnI	GATC	2 cut(s)	242, 680
DpnII	GATC	2 cut(s)	240, 678
DraI	TTTAAA	1 cut(s)	442
Eco24I	GRGCYC	2 cut(s)	306, 489
Eco47I	GGWCC	3 cut(s)	110, 530, 563
Eco91I	GGTNACC	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	563
EcoO65I	GGTNACC	1 cut(s)	284
EcoRII	CCWGG	3 cut(s)	280, 411, 702
EcoT38I	GRGCYC	2 cut(s)	306, 489
FaeI	CATG	8 cut(s)	26, 49, 119, 184, 230, 398, 509, 556
FatI	CATG	8 cut(s)	22, 45, 115, 180, 226, 394, 505, 552
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	6 cut(s)	28, 145, 408, 647, 686, 727
FriOI	GRGCYC	2 cut(s)	306, 489
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	3 cut(s)	299, 587, 665
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	340
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	3 cut(s)	306, 362, 389
Hin1II	CATG	8 cut(s)	26, 49, 119, 184, 230, 398, 509, 556
HinfI	GANTC	4 cut(s)	82, 127, 329, 661
HpaII	CCGG	3 cut(s)	306, 362, 389
HphI	GGTGA	2 cut(s)	277, 296
Hpy166II	GTNNAC	2 cut(s)	166, 401
Hpy188I	TCNGA	1 cut(s)	132
Hpy188III	TCNNGA	5 cut(s)	79, 116, 449, 533, 744
Hpy8I	GTNNAC	2 cut(s)	166, 401
HpyAV	CCTTC	3 cut(s)	130, 335, 464
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4V	TGCA	8 cut(s)	191, 336, 428, 581, 626, 656, 671, 756
HpyF10VI	GCNNNNNNNGC	3 cut(s)	587, 596, 605
Hsp92II	CATG	8 cut(s)	26, 49, 119, 184, 230, 398, 509, 556
KpnI	GGTACC	1 cut(s)	281
Kzo9I	GATC	2 cut(s)	240, 678
LmnI	GCTCC	2 cut(s)	102, 557
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	280
MabI	ACCWGGT	2 cut(s)	280, 411
MaeI	CTAG	3 cut(s)	299, 587, 665
MaeIII	GTNAC	3 cut(s)	18, 284, 767
MalI	GATC	2 cut(s)	242, 680
MboI	GATC	2 cut(s)	240, 678
MboII	GAAGA	1 cut(s)	479
MhlI	GDGCHC	3 cut(s)	306, 489, 610
MluCI	AATT	4 cut(s)	219, 252, 615, 727
MlyI	GAGTC	1 cut(s)	655
MnlI	CCTC	7 cut(s)	5, 86, 123, 182, 241, 256, 315
MseI	TTAA	2 cut(s)	204, 441
MslI	CAYNNNNRTG	2 cut(s)	27, 231
MspI	CCGG	3 cut(s)	306, 362, 389
MspR9I	CCNGG	5 cut(s)	282, 306, 362, 413, 704
MvaI	CCWGG	3 cut(s)	282, 413, 704
MwoI	GCNNNNNNNGC	3 cut(s)	587, 596, 605
NciI	CCSGG	2 cut(s)	306, 362
NdeII	GATC	2 cut(s)	240, 678
NheI	GCTAGC	1 cut(s)	586
NlaIII	CATG	8 cut(s)	26, 49, 119, 184, 230, 398, 509, 556
NlaIV	GGNNCC	3 cut(s)	279, 565, 609
NmeAIII	GCCGAG	1 cut(s)	542
NmuCI	GTSAC	3 cut(s)	18, 284, 767
PagI	TCATGA	1 cut(s)	115
PfeI	GAWTC	3 cut(s)	82, 127, 329
PinAI	ACCGGT	1 cut(s)	388
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	655
PpsI	GAGTC	1 cut(s)	655
PpuMI	RGGWCCY	1 cut(s)	563
Psp5II	RGGWCCY	1 cut(s)	563
Psp6I	CCWGG	3 cut(s)	280, 411, 702
PspEI	GGTNACC	1 cut(s)	284
PspFI	CCCAGC	1 cut(s)	236
PspGI	CCWGG	3 cut(s)	280, 411, 702
PspN4I	GGNNCC	3 cut(s)	279, 565, 609
PspPI	GGNCC	3 cut(s)	110, 530, 563
PspPPI	RGGWCCY	1 cut(s)	563
PstI	CTGCAG	1 cut(s)	430
PstNI	CAGNNNCTG	1 cut(s)	318
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
RseI	CAYNNNNRTG	2 cut(s)	27, 231
SaqAI	TTAA	2 cut(s)	204, 441
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	240, 678
Sau96I	GGNCC	3 cut(s)	110, 530, 563
SchI	GAGTC	1 cut(s)	655
ScrFI	CCNGG	5 cut(s)	282, 306, 362, 413, 704
SduI	GDGCHC	3 cut(s)	306, 489, 610
SexAI	ACCWGGT	2 cut(s)	280, 411
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	1 cut(s)	426
SinI	GGWCC	3 cut(s)	110, 530, 563
SmiMI	CAYNNNNRTG	2 cut(s)	27, 231
SmlI	CTYRAG	3 cut(s)	77, 173, 490
SmoI	CTYRAG	3 cut(s)	77, 173, 490
Sse9I	AATT	4 cut(s)	219, 252, 615, 727
SspI	AATATT	1 cut(s)	714
SspMI	CTAG	3 cut(s)	299, 587, 665
StyD4I	CCNGG	5 cut(s)	280, 304, 360, 411, 702
TaaI	ACNGT	1 cut(s)	290
TaqI	TCGA	1 cut(s)	346
TasI	AATT	4 cut(s)	219, 252, 615, 727
TfiI	GAWTC	3 cut(s)	82, 127, 329
Tru1I	TTAA	2 cut(s)	204, 441
Tru9I	TTAA	2 cut(s)	204, 441
TscAI	CASTG	2 cut(s)	408, 588
TseFI	GTSAC	3 cut(s)	18, 284, 767
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	3 cut(s)	18, 284, 767
TspDTI	ATGAA	4 cut(s)	149, 383, 383, 494
TspRI	CASTG	2 cut(s)	408, 588
VpaK11BI	GGWCC	3 cut(s)	110, 530, 563
XapI	RAATTY	1 cut(s)	727
XspI	CTAG	3 cut(s)	299, 587, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.