pycom01g20540

Sorbitol dehydrogenase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
18924936 .. 18926183
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g20540.2

Sequence Viewer

Length: 1113 bp
ATGGGCAAGGGAGGCCAATCCTGCAATGGCATGGTTAGAGATGTCAAACCTGTTGAGCAGGAAAACATGGCTGCTTGGCTCGTTGATGTTAACACCATCAAGATCCTACCTTTCAAGCTCCCCACTATTGGACCGAATGATGTTCAAATTCGAATTAAGGCTGTCGGCATTTGCGGAAGTGATGTTCACTACCTCAAGACCATGAAATGTGCGGATTTTGAGGTTAAAGAGCCGATGGTGATCGGACATGAGTGTGCTGGAGGATCGATCATAGACAAAGTTGGGAGCGAGGTGAAGCATCTGGTGCCCGGTGACCGAGTGGCGGTTGAGCCCGGCATCAGCTGCGCACATTGCCAGCAGTGCAAAGGAGGCCGCTACAATCTCTGTCCCGACATGAAGTTTTTCGCCACCCCACCGGTTCACGGTGCCTTGGCTAATCAGATTGTGCACCCTGCAGATCTGTGCTTTAAATTGCCGGAAAATGTGAGCTTGGAGGAAGGGGCAATGTGTGAGCCCTTGAGTGTTGGGGTTCACGCTTGTCGGCGAGCCAATGTTGGTCCTGAAACAACTGTTCTGATCATCGGCGCAGGGCCTATTGGTCTGGTCTCAGTTTTGGCCGCTCGTGCTTTCGGGGCACCAAGAATTGTTATAGTGGATATGGATGACAAGCGTCTAGCGATGGCGAAGTCTCTCGGGGCTGATGACACCGTCAAAGTTTCAACAAAAATGGAGGATTTAGACGATGAAGTTGCCGAAATTAAAAAAGCCATGATCTCCGAAGTGGATGTGACCTTCGATTGTGTGGGTTTCAACAAAACCATGTCGACCGGCCTCAATGCTACTCGTCCCGGCGGAAAAGTCTGCGTTGTCGGAATGGGACACGGCCTGATGACAGTGCCTCTCACCCCTGCTGCTGCTAGGGAGATTGACGTTGTTGGAGTTTTCAGATACAAGAACACATGGCCGCTTTGCCTCGAGTTTTTGAGGAGTGGGAAGATCGACGTGAAACCGCTTATCACGCACCGTTTTGGATTCACAGAGAAGGAGGTGGAAGAAGCGTTTGCAACCAGTGCTCGTGGGGGTAATGCCATCAAAGTAATGTTCAAATTGTAA

Protein Analysis

371

Amino Acids

39.67

Weight (kDa)

6.75

Isoelectric Point (pI)

25.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 346
AccB1I GGYRCC 3 cut(s) 304, 425, 634
AccBSI CCGCTC 1 cut(s) 620
AccI GTMKAC 1 cut(s) 824
AciI CCGC 8 cut(s) 174, 212, 323, 373, 618, 852, 965, 1010
AclWI GGATC 2 cut(s) 97, 271
AcoI YGGCCR 2 cut(s) 615, 962
AcsI RAATTY 1 cut(s) 147
AfiI CCNNNNNNNGG 3 cut(s) 128, 322, 422
AgeI ACCGGT 1 cut(s) 415
AgsI TTSAA 5 cut(s) 115, 146, 720, 811, 1105
AjiI CACGTC 1 cut(s) 1003
AloI GAACNNNNNNTCC 2 cut(s) 168, 200
AluBI AGCT 3 cut(s) 118, 342, 489
AluI AGCT 3 cut(s) 118, 342, 489
Alw21I GWGCWC 2 cut(s) 450, 1075
Alw26I GTCTC 2 cut(s) 610, 693
Alw44I GTGCAC 1 cut(s) 446
AlwI GGATC 2 cut(s) 97, 271
Ama87I CYCGRG 2 cut(s) 692, 974
AoxI GGCC 7 cut(s) 13, 370, 590, 615, 829, 883, 962
ApaLI GTGCAC 1 cut(s) 446
ApeKI GCWGC 4 cut(s) 71, 342, 911, 914
ApoI RAATTY 1 cut(s) 147
AsiGI ACCGGT 1 cut(s) 415
Asp700I GAANNNNTTC 1 cut(s) 401
AspLEI GCGC 2 cut(s) 347, 587
AspS9I GGNCC 3 cut(s) 131, 557, 590
AsuC2I CCSGG 3 cut(s) 309, 333, 849
AsuHPI GGTGA 4 cut(s) 250, 304, 323, 895
AsuII TTCGAA 1 cut(s) 151
AvaI CYCGRG 2 cut(s) 692, 974
AvaII GGWCC 2 cut(s) 131, 557
BaeGI GKGCMC 3 cut(s) 309, 450, 637
BanI GGYRCC 3 cut(s) 304, 425, 634
BanII GRGCYC 2 cut(s) 333, 516
BauI CACGAG 2 cut(s) 621, 1074
Bbv12I GWGCWC 2 cut(s) 450, 1075
BbvI GCAGC 4 cut(s) 58, 329, 898, 901
BccI CCATC 4 cut(s) 104, 229, 673, 1097
BceAI ACGGC 1 cut(s) 898
BcgI CGANNNNNNTGC 2 cut(s) 731, 765
BclI TGATCA 1 cut(s) 576
BcnI CCSGG 3 cut(s) 309, 333, 849
BcoDI GTCTC 2 cut(s) 610, 693
BfaI CTAG 2 cut(s) 674, 918
BfmI CTRYAG 1 cut(s) 453
BglII AGATCT 1 cut(s) 457
BisI GCNGC 7 cut(s) 72, 343, 373, 618, 912, 915, 965
BlsI GCNGC 7 cut(s) 73, 344, 374, 619, 913, 916, 966
Bme1390I CCNGG 3 cut(s) 309, 333, 849
Bme18I GGWCC 2 cut(s) 131, 557
BmeT110I CYCGRG 2 cut(s) 692, 974
BmgBI CACGTC 1 cut(s) 1003
BmgT120I GGNCC 3 cut(s) 131, 557, 590
BmiI GGNNCC 3 cut(s) 306, 427, 636
BmrFI CCNGG 3 cut(s) 309, 333, 849
BmsI GCATC 2 cut(s) 307, 345
BoxI GACNNNNGTC 1 cut(s) 669
BpmI CTGGAG 1 cut(s) 279
Bpu14I TTCGAA 1 cut(s) 151
BpuEI CTTGAG 2 cut(s) 179, 538
BpuMI CCSGG 3 cut(s) 309, 333, 849
Bsa29I ATCGAT 1 cut(s) 266
BsaBI GATNNNNATC 1 cut(s) 239
BsaI GGTCTC 1 cut(s) 610
BsaJI CCNNGG 1 cut(s) 429
BsaWI WCCGGW 1 cut(s) 415
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 322, 422
Bse118I RCCGGY 2 cut(s) 415, 827
Bse1I ACTGG 1 cut(s) 1068
Bse3DI GCAATG 3 cut(s) 31, 349, 510
Bse8I GATNNNNATC 1 cut(s) 239
BseCI ATCGAT 1 cut(s) 266
BseDI CCNNGG 1 cut(s) 429
BseGI GGATG 2 cut(s) 667, 790
BseJI GATNNNNATC 1 cut(s) 239
BseLI CCNNNNNNNGG 3 cut(s) 128, 322, 422
BseMI GCAATG 3 cut(s) 31, 349, 510
BseMII CTCAG 1 cut(s) 621
BseNI ACTGG 1 cut(s) 1068
BseRI GAGGAG 1 cut(s) 1000
BseSI GKGCMC 3 cut(s) 309, 450, 637
BseXI GCAGC 4 cut(s) 58, 329, 898, 901
Bsh1285I CGRYCG 1 cut(s) 828
BshFI GGCC 7 cut(s) 15, 372, 592, 617, 831, 885, 964
BshNI GGYRCC 3 cut(s) 304, 425, 634
BshTI ACCGGT 1 cut(s) 415
BshVI ATCGAT 1 cut(s) 266
BsiEI CGRYCG 1 cut(s) 828
BsiHKAI GWGCWC 2 cut(s) 450, 1075
BsiHKCI CYCGRG 2 cut(s) 692, 974
BsiSI CCGG 6 cut(s) 309, 333, 416, 476, 828, 849
BslFI GGGAC 3 cut(s) 372, 831, 891
BslI CCNNNNNNNGG 3 cut(s) 128, 322, 422
BsmAI GTCTC 2 cut(s) 610, 693
BsmFI GGGAC 3 cut(s) 372, 831, 891
BsnI GGCC 7 cut(s) 15, 372, 592, 617, 831, 885, 964
Bso31I GGTCTC 1 cut(s) 610
BsoBI CYCGRG 2 cut(s) 692, 974
Bsp119I TTCGAA 1 cut(s) 151
Bsp1286I GDGCHC 6 cut(s) 309, 333, 450, 516, 637, 1075
Bsp143I GATC 8 cut(s) 102, 240, 263, 267, 457, 576, 771, 996
BspACI CCGC 8 cut(s) 174, 212, 323, 373, 618, 852, 965, 1010
BspANI GGCC 7 cut(s) 15, 372, 592, 617, 831, 885, 964
BspCNI CTCAG 1 cut(s) 620
BspDI ATCGAT 1 cut(s) 266
BspLI GGNNCC 3 cut(s) 306, 427, 636
BspMAI CTGCAG 1 cut(s) 457
BspPI GGATC 2 cut(s) 97, 271
BspT104I TTCGAA 1 cut(s) 151
BspT107I GGYRCC 3 cut(s) 304, 425, 634
BspTNI GGTCTC 1 cut(s) 610
BsrBI CCGCTC 1 cut(s) 620
BsrDI GCAATG 3 cut(s) 31, 349, 510
BsrFI RCCGGY 2 cut(s) 415, 827
BsrI ACTGG 1 cut(s) 1068
BssAI RCCGGY 2 cut(s) 415, 827
BssECI CCNNGG 1 cut(s) 429
BssMI GATC 8 cut(s) 102, 240, 263, 267, 457, 576, 771, 996
BssSI CACGAG 2 cut(s) 621, 1074
BssT1I CCWWGG 1 cut(s) 429
Bst2BI CACGAG 2 cut(s) 621, 1074
Bst4CI ACNGT 5 cut(s) 425, 571, 709, 895, 1025
BstAPI GCANNNNNTGC 3 cut(s) 304, 342, 1070
BstBI TTCGAA 1 cut(s) 151
BstC8I GCNNGC 2 cut(s) 356, 546
BstDEI CTNAG 1 cut(s) 607
BstEII GGTNACC 1 cut(s) 311
BstF5I GGATG 2 cut(s) 667, 790
BstHHI GCGC 2 cut(s) 347, 587
BstKTI GATC 8 cut(s) 105, 243, 266, 270, 460, 579, 774, 999
BstMAI GTCTC 2 cut(s) 610, 693
BstMBI GATC 8 cut(s) 102, 240, 263, 267, 457, 576, 771, 996
BstMCI CGRYCG 1 cut(s) 828
BstPAI GACNNNNGTC 1 cut(s) 669
BstPI GGTNACC 1 cut(s) 311
BstSCI CCNGG 3 cut(s) 307, 331, 847
BstSFI CTRYAG 1 cut(s) 453
BstSLI GKGCMC 3 cut(s) 309, 450, 637
BstV1I GCAGC 4 cut(s) 58, 329, 898, 901
BstX2I RGATCY 2 cut(s) 102, 457
BstYI RGATCY 2 cut(s) 102, 457
Bsu15I ATCGAT 1 cut(s) 266
BsuRI GGCC 7 cut(s) 15, 372, 592, 617, 831, 885, 964
BsuTUI ATCGAT 1 cut(s) 266
BtgZI GCGATG 1 cut(s) 692
BtrI CACGTC 1 cut(s) 1003
BtsCI GGATG 2 cut(s) 667, 790
BtsI GCAGTG 1 cut(s) 365
BtsIMutI CAGTG 3 cut(s) 365, 900, 1075
Cac8I GCNNGC 2 cut(s) 356, 546
CfoI GCGC 2 cut(s) 347, 587
Cfr10I RCCGGY 2 cut(s) 415, 827
Cfr13I GGNCC 3 cut(s) 131, 557, 590
ClaI ATCGAT 1 cut(s) 266
CseI GACGC 1 cut(s) 659
CspAI ACCGGT 1 cut(s) 415
CviAII CATG 8 cut(s) 31, 67, 202, 248, 394, 769, 820, 960
DdeI CTNAG 1 cut(s) 607
DpnI GATC 8 cut(s) 104, 242, 265, 269, 459, 578, 773, 998
DpnII GATC 8 cut(s) 102, 240, 263, 267, 457, 576, 771, 996
DraI TTTAAA 1 cut(s) 469
EaeI YGGCCR 2 cut(s) 615, 962
EciI GGCGGA 1 cut(s) 867
Eco130I CCWWGG 1 cut(s) 429
Eco24I GRGCYC 2 cut(s) 333, 516
Eco31I GGTCTC 1 cut(s) 610
Eco47I GGWCC 2 cut(s) 131, 557
Eco88I CYCGRG 2 cut(s) 692, 974
Eco91I GGTNACC 1 cut(s) 311
EcoO109I RGGNCCY 1 cut(s) 590
EcoO65I GGTNACC 1 cut(s) 311
EcoT14I CCWWGG 1 cut(s) 429
EcoT38I GRGCYC 2 cut(s) 333, 516
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 8 cut(s) 34, 70, 205, 251, 397, 772, 823, 963
FaqI GGGAC 3 cut(s) 372, 831, 891
FatI CATG 8 cut(s) 30, 66, 201, 247, 393, 768, 819, 959
FbaI TGATCA 1 cut(s) 576
FblI GTMKAC 1 cut(s) 824
Fnu4HI GCNGC 7 cut(s) 72, 343, 373, 618, 912, 915, 965
FokI GGATG 2 cut(s) 674, 797
FriOI GRGCYC 2 cut(s) 333, 516
Fsp4HI GCNGC 7 cut(s) 72, 343, 373, 618, 912, 915, 965
FspBI CTAG 2 cut(s) 674, 918
FspI TGCGCA 1 cut(s) 346
GlaI GCGC 2 cut(s) 346, 586
GluI GCNGC 7 cut(s) 72, 343, 373, 618, 912, 915, 965
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 7 cut(s) 15, 372, 592, 617, 831, 885, 964
HapII CCGG 6 cut(s) 309, 333, 416, 476, 828, 849
HgaI GACGC 1 cut(s) 659
HhaI GCGC 2 cut(s) 347, 587
Hin1II CATG 8 cut(s) 34, 70, 205, 251, 397, 772, 823, 963
Hin6I GCGC 2 cut(s) 345, 585
HinP1I GCGC 2 cut(s) 345, 585
HincII GTYRAC 2 cut(s) 91, 825
HindII GTYRAC 2 cut(s) 91, 825
HinfI GANTC 1 cut(s) 1032
HpaI GTTAAC 1 cut(s) 91
HpaII CCGG 6 cut(s) 309, 333, 416, 476, 828, 849
HphI GGTGA 4 cut(s) 250, 304, 323, 895
Hpy166II GTNNAC 6 cut(s) 91, 187, 421, 448, 532, 825
Hpy188I TCNGA 6 cut(s) 245, 441, 576, 778, 872, 947
Hpy188III TCNNGA 4 cut(s) 100, 196, 389, 560
Hpy8I GTNNAC 6 cut(s) 91, 187, 421, 448, 532, 825
Hpy99I CGWCG 1 cut(s) 1004
HpyAV CCTTC 3 cut(s) 491, 802, 1036
HpyCH4III ACNGT 5 cut(s) 425, 571, 709, 895, 1025
HpyCH4IV ACGT 2 cut(s) 930, 1002
HpyCH4V TGCA 5 cut(s) 24, 363, 448, 455, 1064
HpyF3I CTNAG 1 cut(s) 607
HpySE526I ACGT 2 cut(s) 930, 1002
Hsp92II CATG 8 cut(s) 34, 70, 205, 251, 397, 772, 823, 963
HspAI GCGC 2 cut(s) 345, 585
Ksp22I TGATCA 1 cut(s) 576
KspAI GTTAAC 1 cut(s) 91
Kzo9I GATC 8 cut(s) 102, 240, 263, 267, 457, 576, 771, 996
LmnI GCTCC 2 cut(s) 123, 285
Lsp1109I GCAGC 4 cut(s) 58, 329, 898, 901
LweI GCATC 2 cut(s) 307, 345
MaeI CTAG 2 cut(s) 674, 918
MaeII ACGT 2 cut(s) 930, 1002
MaeIII GTNAC 2 cut(s) 311, 787
MalI GATC 8 cut(s) 104, 242, 265, 269, 459, 578, 773, 998
MbiI CCGCTC 1 cut(s) 620
MboI GATC 8 cut(s) 102, 240, 263, 267, 457, 576, 771, 996
MboII GAAGA 2 cut(s) 1006, 1064
MflI RGATCY 2 cut(s) 102, 457
MhlI GDGCHC 6 cut(s) 309, 333, 450, 516, 637, 1075
MluCI AATT 6 cut(s) 147, 153, 470, 642, 756, 1106
MmeI TCCRAC 2 cut(s) 850, 916
MroXI GAANNNNTTC 1 cut(s) 401
MseI TTAA 5 cut(s) 90, 156, 225, 468, 759
MslI CAYNNNNRTG 1 cut(s) 252
MspA1I CMGCKG 1 cut(s) 342
MspI CCGG 6 cut(s) 309, 333, 416, 476, 828, 849
MspR9I CCNGG 3 cut(s) 309, 333, 849
NciI CCSGG 3 cut(s) 309, 333, 849
NdeII GATC 8 cut(s) 102, 240, 263, 267, 457, 576, 771, 996
NlaIII CATG 8 cut(s) 34, 70, 205, 251, 397, 772, 823, 963
NlaIV GGNNCC 3 cut(s) 306, 427, 636
NmuCI GTSAC 2 cut(s) 311, 787
NsbI TGCGCA 1 cut(s) 346
NspV TTCGAA 1 cut(s) 151
PaeR7I CTCGAG 1 cut(s) 974
PdmI GAANNNNTTC 1 cut(s) 401
PfeI GAWTC 1 cut(s) 1032
PflFI GACNNNGTC 1 cut(s) 707
PinAI ACCGGT 1 cut(s) 415
PkrI GCNGC 7 cut(s) 73, 344, 374, 619, 913, 916, 966
PshAI GACNNNNGTC 1 cut(s) 669
PspEI GGTNACC 1 cut(s) 311
PspN4I GGNNCC 3 cut(s) 306, 427, 636
PspPI GGNCC 3 cut(s) 131, 557, 590
PspXI VCTCGAGB 1 cut(s) 974
PstI CTGCAG 1 cut(s) 457
PsuI RGATCY 2 cut(s) 102, 457
PsyI GACNNNGTC 1 cut(s) 707
PvuII CAGCTG 1 cut(s) 342
RseI CAYNNNNRTG 1 cut(s) 252
SalI GTCGAC 1 cut(s) 823
SaqAI TTAA 5 cut(s) 90, 156, 225, 468, 759
SatI GCNGC 7 cut(s) 72, 343, 373, 618, 912, 915, 965
Sau3AI GATC 8 cut(s) 102, 240, 263, 267, 457, 576, 771, 996
Sau96I GGNCC 3 cut(s) 131, 557, 590
ScrFI CCNGG 3 cut(s) 309, 333, 849
SduI GDGCHC 6 cut(s) 309, 333, 450, 516, 637, 1075
SfaNI GCATC 2 cut(s) 307, 345
SfcI CTRYAG 1 cut(s) 453
Sfr274I CTCGAG 1 cut(s) 974
SfuI TTCGAA 1 cut(s) 151
SinI GGWCC 2 cut(s) 131, 557
SlaI CTCGAG 1 cut(s) 974
SmiMI CAYNNNNRTG 1 cut(s) 252
SmlI CTYRAG 3 cut(s) 194, 517, 974
SmoI CTYRAG 3 cut(s) 194, 517, 974
Sse9I AATT 6 cut(s) 147, 153, 470, 642, 756, 1106
SsiI CCGC 8 cut(s) 174, 212, 323, 373, 618, 852, 965, 1010
SspMI CTAG 2 cut(s) 674, 918
StyD4I CCNGG 3 cut(s) 307, 331, 847
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 5 cut(s) 425, 571, 709, 895, 1025
TaiI ACGT 2 cut(s) 933, 1005
TaqI TCGA 6 cut(s) 151, 266, 795, 824, 975, 999
TaqII GACCGA 2 cut(s) 148, 330
TasI AATT 6 cut(s) 147, 153, 470, 642, 756, 1106
TauI GCSGC 3 cut(s) 375, 620, 967
TfiI GAWTC 1 cut(s) 1032
Tru1I TTAA 5 cut(s) 90, 156, 225, 468, 759
Tru9I TTAA 5 cut(s) 90, 156, 225, 468, 759
TscAI CASTG 3 cut(s) 365, 900, 1075
TseFI GTSAC 2 cut(s) 311, 787
TseI GCWGC 4 cut(s) 71, 342, 911, 914
Tsp45I GTSAC 2 cut(s) 311, 787
TspDTI ATGAA 3 cut(s) 218, 410, 759
TspRI CASTG 3 cut(s) 365, 900, 1075
Tth111I GACNNNGTC 1 cut(s) 707
VneI GTGCAC 1 cut(s) 446
VpaK11BI GGWCC 2 cut(s) 131, 557
XapI RAATTY 1 cut(s) 147
XcmI CCANNNNNNNNNTGG 1 cut(s) 23
XhoI CTCGAG 1 cut(s) 974
XmiI GTMKAC 1 cut(s) 824
XmnI GAANNNNTTC 1 cut(s) 401
XspI CTAG 2 cut(s) 674, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.