MD01G1195400.v1.1

Sorbitol dehydrogenase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
29377997 .. 29379675
1679 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1195400.v1.1.491

Sequence Viewer

Length: 1107 bp
ATGGGTAAGGGAGGCCAATCGATTAATGGAGTGGCTAAGGAAGCCAAACCTGTTGAGCAAGAAAACATGGCTGCTTGGCTTGTTGATGTCAACACCATCAAGATCCTACCTTTCGAGCTCCCCAGTATCGGACCCAATGATGTCCGGATTTGGATTAAGGCTGTCGGCATTTGTGGAAGCGATGTTCACTACCTCAAGACCATGAAATGTGCGAATTTTGAGGTCAAGGAGCCAATGGTAATCGGACATGAGTGTGCTGGCATCGTAGACAAAGTTGGGAGCGAGGTGAAGCATCTGGTGCCTGGTGACCGGGTGGCGGTTGAGCCCGGTATCAGTTGCTCTCGGTGTCAGCAGTGCAAAGGAGGGCGGTACAATCTTTGCCCCGACATGAAGTTTTTCGCCACCCCACCGGTTCATGGTTCCTTGGCAAATCAGATTGTGCATCCTGCGGATCTATGCTTTAAGCTGCCAGAGAATGTGAGCTTGGAGGAAGGGGCAATGTGCGAGCCCTTGAGTGTTGGGGTTCATGCTTGTCGGCGAGCCAATGTTGGTCCCGAAACAACTGTTCTGGTCATCGGAGCTGGGCCTATTGGTCTCGTTTCAGTTTTGGCCGCTCGTGCTTTTGGGGCACCAAGAATTGTCATCGTGGATATGGATGACCAACGTTTAGCCATGGCAAAGTCTCTTGGCGCTGATGGCACTGTAAAAGTTTCAACAAAAATGGAGGATATAGATGACGAAGTTGCCATGATTAAAGAAGCCATGGAATCCGAAGTGGATGTAACCTTTGATTGTGTGGGTTTCAGTAAGACCATGTCGACAGGTCTCAAGGCCACTCGCTCCGGCGGCAGAGTCTGCCTTGTCGGAATGGGACACGGCACGATGACAGTGCCTCTCACTCCAGCTGCTGCCAGGGAGGTTGATGTGGTTGGAGTTTTCCGGTACAGGAACACATGGCCACTTTGCCTCGATTTTTTGAGAAGTGGGAAGATCGACGTGAAGCCGCTCATTACTCACCGGTTTGGATTTACCGAGAAGGATGTGGAAGAAGCCTTTGCAACCAGTGCTCGTGGGGGTAACGCCATTAAAGTCATGTTTAATCTTTAG

Protein Analysis

369

Amino Acids

39.44

Weight (kDa)

6.27

Isoelectric Point (pI)

25.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 44 - 158 1.2e-27 Alcohol dehydrogenase GroES-like domain
Glu_dehyd_C PF16912 165 - 294 4.7e-09 Glucose dehydrogenase C-terminus
ADH_zinc_N PF00107 196 - 326 9.4e-29 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 230 - 359 4.3e-07 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 298, 628
AccBSI CCGCTC 2 cut(s) 614, 1006
AccI GTMKAC 2 cut(s) 267, 818
AccIII TCCGGA 1 cut(s) 144
AciI CCGC 6 cut(s) 317, 367, 449, 612, 846, 1004
AclI AACGTT 1 cut(s) 664
AclWI GGATC 2 cut(s) 97, 459
AcoI YGGCCR 2 cut(s) 609, 956
AcsI RAATTY 1 cut(s) 214
AfaI GTAC 2 cut(s) 371, 944
AfiI CCNNNNNNNGG 3 cut(s) 128, 316, 416
AgeI ACCGGT 2 cut(s) 409, 1017
AgsI TTSAA 1 cut(s) 714
AjiI CACGTC 1 cut(s) 997
AjnI CCWGG 2 cut(s) 301, 911
AjuI GAANNNNNNNTTGG 2 cut(s) 467, 499
AloI GAACNNNNNNTCC 2 cut(s) 168, 200
AluBI AGCT 5 cut(s) 118, 466, 483, 581, 905
AluI AGCT 5 cut(s) 118, 466, 483, 581, 905
Alw21I GWGCWC 2 cut(s) 120, 1069
Alw26I GTCTC 3 cut(s) 599, 687, 830
AlwI GGATC 2 cut(s) 97, 459
AlwNI CAGNNNCTG 2 cut(s) 855, 908
Aor13HI TCCGGA 1 cut(s) 144
AoxI GGCC 5 cut(s) 13, 584, 609, 831, 956
ApeKI GCWGC 4 cut(s) 71, 466, 905, 908
ApoI RAATTY 1 cut(s) 214
AseI ATTAAT 1 cut(s) 24
AsiGI ACCGGT 2 cut(s) 409, 1017
Asp700I GAANNNNTTC 1 cut(s) 395
AspLEI GCGC 1 cut(s) 692
AspS9I GGNCC 3 cut(s) 131, 551, 584
AsuC2I CCSGG 2 cut(s) 311, 327
AsuHPI GGTGA 3 cut(s) 298, 317, 1007
AvaII GGWCC 2 cut(s) 131, 551
BaeGI GKGCMC 1 cut(s) 631
BalI TGGCCA 1 cut(s) 958
BanI GGYRCC 2 cut(s) 298, 628
BanII GRGCYC 3 cut(s) 120, 327, 510
BauI CACGAG 2 cut(s) 615, 1068
Bbv12I GWGCWC 2 cut(s) 120, 1069
BbvI GCAGC 4 cut(s) 58, 453, 892, 895
BccI CCATC 2 cut(s) 104, 689
BceAI ACGGC 1 cut(s) 892
BcgI CGANNNNNNTGC 2 cut(s) 871, 905
BciT130I CCWGG 2 cut(s) 303, 913
BcnI CCSGG 2 cut(s) 311, 327
BcoDI GTCTC 3 cut(s) 599, 687, 830
BfoI RGCGCY 1 cut(s) 693
BisI GCNGC 7 cut(s) 72, 467, 612, 847, 906, 909, 1004
BlsI GCNGC 7 cut(s) 73, 468, 613, 848, 907, 910, 1005
Bme1390I CCNGG 4 cut(s) 303, 311, 327, 913
Bme18I GGWCC 2 cut(s) 131, 551
BmgBI CACGTC 1 cut(s) 997
BmgT120I GGNCC 3 cut(s) 131, 551, 584
BmiI GGNNCC 6 cut(s) 133, 231, 300, 421, 553, 630
BmrFI CCNGG 4 cut(s) 303, 311, 327, 913
BmrI ACTGGG 1 cut(s) 117
BmsI GCATC 3 cut(s) 270, 301, 451
BmuI ACTGGG 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 885
Bpu10I CCTNAGC 1 cut(s) 36
BpuEI CTTGAG 3 cut(s) 179, 532, 812
BpuMI CCSGG 2 cut(s) 311, 327
Bsa29I ATCGAT 1 cut(s) 20
BsaI GGTCTC 2 cut(s) 599, 830
BsaJI CCNNGG 4 cut(s) 423, 672, 762, 912
BsaWI WCCGGW 4 cut(s) 144, 409, 939, 1017
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 316, 416
Bse118I RCCGGY 2 cut(s) 409, 1017
Bse1I ACTGG 2 cut(s) 123, 1062
Bse3DI GCAATG 1 cut(s) 504
BseAI TCCGGA 1 cut(s) 144
BseBI CCWGG 2 cut(s) 303, 913
BseCI ATCGAT 1 cut(s) 20
BseDI CCNNGG 4 cut(s) 423, 672, 762, 912
BseGI GGATG 4 cut(s) 442, 661, 784, 1045
BseLI CCNNNNNNNGG 3 cut(s) 128, 316, 416
BseMI GCAATG 1 cut(s) 504
BseNI ACTGG 2 cut(s) 123, 1062
BseSI GKGCMC 1 cut(s) 631
BseXI GCAGC 4 cut(s) 58, 453, 892, 895
BseYI CCCAGC 1 cut(s) 581
BshFI GGCC 5 cut(s) 15, 586, 611, 833, 958
BshNI GGYRCC 2 cut(s) 298, 628
BshTI ACCGGT 2 cut(s) 409, 1017
BshVI ATCGAT 1 cut(s) 20
BsiHKAI GWGCWC 2 cut(s) 120, 1069
BsiSI CCGG 7 cut(s) 145, 310, 327, 410, 843, 940, 1018
BslFI GGGAC 2 cut(s) 537, 885
BslI CCNNNNNNNGG 3 cut(s) 128, 316, 416
BsmAI GTCTC 3 cut(s) 599, 687, 830
BsmFI GGGAC 2 cut(s) 537, 885
BsnI GGCC 5 cut(s) 15, 586, 611, 833, 958
Bso31I GGTCTC 2 cut(s) 599, 830
Bsp1286I GDGCHC 5 cut(s) 120, 327, 510, 631, 1069
Bsp13I TCCGGA 1 cut(s) 144
Bsp143I GATC 3 cut(s) 102, 451, 990
Bsp19I CCATGG 2 cut(s) 672, 762
BspACI CCGC 6 cut(s) 317, 367, 449, 612, 846, 1004
BspANI GGCC 5 cut(s) 15, 586, 611, 833, 958
BspDI ATCGAT 1 cut(s) 20
BspEI TCCGGA 1 cut(s) 144
BspLI GGNNCC 6 cut(s) 133, 231, 300, 421, 553, 630
BspPI GGATC 2 cut(s) 97, 459
BspT107I GGYRCC 2 cut(s) 298, 628
BspTNI GGTCTC 2 cut(s) 599, 830
BsrBI CCGCTC 2 cut(s) 614, 1006
BsrDI GCAATG 1 cut(s) 504
BsrFI RCCGGY 2 cut(s) 409, 1017
BsrI ACTGG 2 cut(s) 123, 1062
BssAI RCCGGY 2 cut(s) 409, 1017
BssECI CCNNGG 4 cut(s) 423, 672, 762, 912
BssMI GATC 3 cut(s) 102, 451, 990
BssSI CACGAG 2 cut(s) 615, 1068
BssT1I CCWWGG 3 cut(s) 423, 672, 762
Bst2BI CACGAG 2 cut(s) 615, 1068
Bst2UI CCWGG 2 cut(s) 303, 913
Bst4CI ACNGT 3 cut(s) 565, 703, 889
BstAPI GCANNNNNTGC 3 cut(s) 298, 855, 1064
BstC8I GCNNGC 3 cut(s) 259, 506, 540
BstDEI CTNAG 1 cut(s) 36
BstDSI CCRYGG 2 cut(s) 672, 762
BstEII GGTNACC 1 cut(s) 305
BstF5I GGATG 4 cut(s) 442, 661, 784, 1045
BstH2I RGCGCY 1 cut(s) 693
BstHHI GCGC 1 cut(s) 692
BstKTI GATC 3 cut(s) 105, 454, 993
BstMAI GTCTC 3 cut(s) 599, 687, 830
BstMBI GATC 3 cut(s) 102, 451, 990
BstMWI GCNNNNNNNGC 8 cut(s) 41, 298, 617, 626, 696, 846, 855, 1064
BstNI CCWGG 2 cut(s) 303, 913
BstPI GGTNACC 1 cut(s) 305
BstSCI CCNGG 4 cut(s) 301, 309, 325, 911
BstSLI GKGCMC 1 cut(s) 631
BstV1I GCAGC 4 cut(s) 58, 453, 892, 895
BstX2I RGATCY 2 cut(s) 102, 451
BstYI RGATCY 2 cut(s) 102, 451
Bsu15I ATCGAT 1 cut(s) 20
BsuRI GGCC 5 cut(s) 15, 586, 611, 833, 958
BsuTUI ATCGAT 1 cut(s) 20
BtgI CCRYGG 2 cut(s) 672, 762
BtgZI GCGATG 1 cut(s) 195
BtrI CACGTC 1 cut(s) 997
BtsCI GGATG 4 cut(s) 442, 661, 784, 1045
BtsI GCAGTG 1 cut(s) 359
BtsIMutI CAGTG 4 cut(s) 359, 699, 894, 1069
Cac8I GCNNGC 3 cut(s) 259, 506, 540
CaiI CAGNNNCTG 2 cut(s) 855, 908
CfoI GCGC 1 cut(s) 692
Cfr10I RCCGGY 2 cut(s) 409, 1017
Cfr13I GGNCC 3 cut(s) 131, 551, 584
ClaI ATCGAT 1 cut(s) 20
Csp6I GTAC 2 cut(s) 370, 943
CspAI ACCGGT 2 cut(s) 409, 1017
CviQI GTAC 2 cut(s) 370, 943
DdeI CTNAG 1 cut(s) 36
DpnI GATC 3 cut(s) 104, 453, 992
DpnII GATC 3 cut(s) 102, 451, 990
EaeI YGGCCR 2 cut(s) 609, 956
Ecl136II GAGCTC 1 cut(s) 118
Eco130I CCWWGG 3 cut(s) 423, 672, 762
Eco24I GRGCYC 3 cut(s) 120, 327, 510
Eco31I GGTCTC 2 cut(s) 599, 830
Eco47I GGWCC 2 cut(s) 131, 551
Eco53kI GAGCTC 1 cut(s) 118
Eco91I GGTNACC 1 cut(s) 305
EcoICRI GAGCTC 1 cut(s) 118
EcoO65I GGTNACC 1 cut(s) 305
EcoRII CCWGG 2 cut(s) 301, 911
EcoT14I CCWWGG 3 cut(s) 423, 672, 762
EcoT38I GRGCYC 3 cut(s) 120, 327, 510
ErhI CCWWGG 3 cut(s) 423, 672, 762
FaqI GGGAC 2 cut(s) 537, 885
FblI GTMKAC 2 cut(s) 267, 818
Fnu4HI GCNGC 7 cut(s) 72, 467, 612, 847, 906, 909, 1004
FokI GGATG 4 cut(s) 429, 668, 791, 1052
FriOI GRGCYC 3 cut(s) 120, 327, 510
Fsp4HI GCNGC 7 cut(s) 72, 467, 612, 847, 906, 909, 1004
GlaI GCGC 1 cut(s) 691
GluI GCNGC 7 cut(s) 72, 467, 612, 847, 906, 909, 1004
GsaI CCCAGC 1 cut(s) 585
GsuI CTGGAG 1 cut(s) 885
HaeII RGCGCY 1 cut(s) 693
HaeIII GGCC 5 cut(s) 15, 586, 611, 833, 958
HapII CCGG 7 cut(s) 145, 310, 327, 410, 843, 940, 1018
HhaI GCGC 1 cut(s) 692
Hin6I GCGC 1 cut(s) 690
HinP1I GCGC 1 cut(s) 690
HincII GTYRAC 2 cut(s) 91, 819
HindII GTYRAC 2 cut(s) 91, 819
HinfI GANTC 2 cut(s) 767, 852
HpaII CCGG 7 cut(s) 145, 310, 327, 410, 843, 940, 1018
HphI GGTGA 3 cut(s) 298, 317, 1007
Hpy166II GTNNAC 4 cut(s) 91, 187, 268, 819
Hpy188I TCNGA 6 cut(s) 131, 245, 435, 578, 772, 866
Hpy188III TCNNGA 4 cut(s) 100, 145, 196, 554
Hpy8I GTNNAC 4 cut(s) 91, 187, 268, 819
Hpy99I CGWCG 1 cut(s) 998
HpyAV CCTTC 2 cut(s) 485, 1030
HpyCH4III ACNGT 3 cut(s) 565, 703, 889
HpyCH4IV ACGT 2 cut(s) 664, 996
HpyCH4V TGCA 3 cut(s) 357, 442, 1058
HpyF10VI GCNNNNNNNGC 8 cut(s) 41, 298, 617, 626, 696, 846, 855, 1064
HpyF3I CTNAG 1 cut(s) 36
HpySE526I ACGT 2 cut(s) 664, 996
HspAI GCGC 1 cut(s) 690
Kpn2I TCCGGA 1 cut(s) 144
Kzo9I GATC 3 cut(s) 102, 451, 990
LmnI GCTCC 5 cut(s) 123, 229, 279, 578, 845
Lsp1109I GCAGC 4 cut(s) 58, 453, 892, 895
LweI GCATC 3 cut(s) 270, 301, 451
MaeII ACGT 2 cut(s) 664, 996
MaeIII GTNAC 3 cut(s) 305, 781, 1076
MalI GATC 3 cut(s) 104, 453, 992
MbiI CCGCTC 2 cut(s) 614, 1006
MboI GATC 3 cut(s) 102, 451, 990
MboII GAAGA 2 cut(s) 1000, 1058
MflI RGATCY 2 cut(s) 102, 451
MhlI GDGCHC 5 cut(s) 120, 327, 510, 631, 1069
MlsI TGGCCA 1 cut(s) 958
MluCI AATT 2 cut(s) 214, 636
MluNI TGGCCA 1 cut(s) 958
MlyI GAGTC 1 cut(s) 861
MmeI TCCRAC 2 cut(s) 844, 910
Mox20I TGGCCA 1 cut(s) 958
MroI TCCGGA 1 cut(s) 144
MroXI GAANNNNTTC 1 cut(s) 395
MscI TGGCCA 1 cut(s) 958
MseI TTAA 6 cut(s) 24, 156, 462, 753, 1086, 1098
MslI CAYNNNNRTG 1 cut(s) 252
Msp20I TGGCCA 1 cut(s) 958
MspA1I CMGCKG 1 cut(s) 905
MspI CCGG 7 cut(s) 145, 310, 327, 410, 843, 940, 1018
MspR9I CCNGG 4 cut(s) 303, 311, 327, 913
MvaI CCWGG 2 cut(s) 303, 913
MwoI GCNNNNNNNGC 8 cut(s) 41, 298, 617, 626, 696, 846, 855, 1064
NciI CCSGG 2 cut(s) 311, 327
NcoI CCATGG 2 cut(s) 672, 762
NdeII GATC 3 cut(s) 102, 451, 990
NlaIV GGNNCC 6 cut(s) 133, 231, 300, 421, 553, 630
NmuCI GTSAC 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 1 cut(s) 767
PflFI GACNNNGTC 1 cut(s) 814
PinAI ACCGGT 2 cut(s) 409, 1017
PkrI GCNGC 7 cut(s) 73, 468, 613, 848, 907, 910, 1005
PleI GAGTC 1 cut(s) 860
PpsI GAGTC 1 cut(s) 860
PshBI ATTAAT 1 cut(s) 24
Psp124BI GAGCTC 1 cut(s) 120
Psp1406I AACGTT 1 cut(s) 664
Psp6I CCWGG 2 cut(s) 301, 911
PspEI GGTNACC 1 cut(s) 305
PspFI CCCAGC 1 cut(s) 581
PspGI CCWGG 2 cut(s) 301, 911
PspN4I GGNNCC 6 cut(s) 133, 231, 300, 421, 553, 630
PspPI GGNCC 3 cut(s) 131, 551, 584
PstNI CAGNNNCTG 2 cut(s) 855, 908
PsuI RGATCY 2 cut(s) 102, 451
PsyI GACNNNGTC 1 cut(s) 814
PvuII CAGCTG 1 cut(s) 905
RsaI GTAC 2 cut(s) 371, 944
RsaNI GTAC 2 cut(s) 370, 943
RseI CAYNNNNRTG 1 cut(s) 252
SacI GAGCTC 1 cut(s) 120
SalI GTCGAC 1 cut(s) 817
SaqAI TTAA 6 cut(s) 24, 156, 462, 753, 1086, 1098
SatI GCNGC 7 cut(s) 72, 467, 612, 847, 906, 909, 1004
Sau3AI GATC 3 cut(s) 102, 451, 990
Sau96I GGNCC 3 cut(s) 131, 551, 584
SchI GAGTC 1 cut(s) 861
ScrFI CCNGG 4 cut(s) 303, 311, 327, 913
SduI GDGCHC 5 cut(s) 120, 327, 510, 631, 1069
SfaNI GCATC 3 cut(s) 270, 301, 451
SinI GGWCC 2 cut(s) 131, 551
SmiMI CAYNNNNRTG 1 cut(s) 252
SmlI CTYRAG 3 cut(s) 194, 511, 827
SmoI CTYRAG 3 cut(s) 194, 511, 827
Sse9I AATT 2 cut(s) 214, 636
SsiI CCGC 6 cut(s) 317, 367, 449, 612, 846, 1004
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 4 cut(s) 301, 309, 325, 911
StyI CCWWGG 3 cut(s) 423, 672, 762
TaaI ACNGT 3 cut(s) 565, 703, 889
TaiI ACGT 2 cut(s) 667, 999
TaqI TCGA 5 cut(s) 20, 114, 818, 969, 993
TasI AATT 2 cut(s) 214, 636
TauI GCSGC 3 cut(s) 614, 849, 1006
TfiI GAWTC 1 cut(s) 767
Tru1I TTAA 6 cut(s) 24, 156, 462, 753, 1086, 1098
Tru9I TTAA 6 cut(s) 24, 156, 462, 753, 1086, 1098
TscAI CASTG 4 cut(s) 359, 706, 894, 1069
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 4 cut(s) 71, 466, 905, 908
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 4 cut(s) 218, 404, 404, 515
TspRI CASTG 4 cut(s) 359, 706, 894, 1069
Tth111I GACNNNGTC 1 cut(s) 814
VpaK11BI GGWCC 2 cut(s) 131, 551
VspI ATTAAT 1 cut(s) 24
XapI RAATTY 1 cut(s) 214
XcmI CCANNNNNNNNNTGG 1 cut(s) 23
XmiI GTMKAC 2 cut(s) 267, 818
XmnI GAANNNNTTC 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.