MD07G1262100.v1.1

Sorbitol dehydrogenase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
33145855 .. 33147351
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1262100.v1.1.491

Sequence Viewer

Length: 1107 bp
ATGGGTAAGGGAGGGCAATTGATTAACGAAGTGGGTAAGGAAGCCAAACCTATTAAGCAAGAAAACATGGCTGCTTGGCTTGTTGATGTCAACACCATCAGGATCCTACCTTTCCAGCTCCCCAGTATCGGACCCAATGATGTTCGGATTCGGATTAAGGCTGTCGGCATTTGTGGAAGCGATGTTCACTACCTCAAGACAATGAAATGTGCGGATTTTGAGGTTAAGGAGCCAATGGTGATCGGACATGAATGTGCTGGGATCGTAGAAAAAGTTGGCAGCGAGGTGAAGCATCTGGTGCCCGGTGACCGCGTCGCGGTAGAACCTGGTATCAGCTGCTCACGGTGCCAGCAGTGCAGAGGAGGCCGCTACAATCTGTGCCCGGACATGAAGTTTTTCGCCACCCCACCGGTTCATGGTTCCTTGGCTAATCAGATTGTGCATCCTGCGGATCTATGTTTTAAGCTGCCGGAGAACGTGAGCTTGGAGGAAGGGGCAATGTGCGAGCCCTTAAGTGTTGGGGTTCACGCTTGTCGTCGAGCCAATGTTGGTCCCGAAACAACTGTTCTGGTCATCGGAGCAGGGCCCATTGGTCTGGTTTCTGTTTTGGCCGCTCGTGCTTTTGGGGCACCAAGAATTGTCATTGTGGATATGGATGACCAGCGTCTAGCTATGGCAAAGTCTCTCGGCGCTGATGAAACCGTGAAAGTTTCGACAAAAATGGAGGACTTAGATGATGAAGTTGACAAGATTAAAAAGGCCATGAATTCCGAAGTGGATGTGACCTTCGATTGTGTTGGTTTCAATAAAACCATGTCGACGGGTCTCAACGCCACTCGCCCCGGCGGTAAAGTCTGCCTTGTCGGAATGGGACACGGCATGATGACTGTCCCTCTAACTCCAGCTGCTGCTAGGGAAGTTGATGTGGTTGGAGTTTTCCGGTACAAGAACACATGGCCACTTTGCCTCGATTTCTTGAGAACTGGGAAGATCGACGTGAAGCCGCTTATTACTCACCGGTTTGGATTCACCGAAAAGGAGGTGGAAGAAGCCTTTGCGACCAGTGCTCGTGGGGGTAACGCCATCAAAGTCATGTTTAATCTATAG

Protein Analysis

369

Amino Acids

39.7

Weight (kDa)

7.05

Isoelectric Point (pI)

21.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 44 - 158 3.5e-29 Alcohol dehydrogenase GroES-like domain
Glu_dehyd_C PF16912 165 - 294 1.7e-09 Glucose dehydrogenase C-terminus
ADH_zinc_N PF00107 196 - 326 6.4e-30 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 229 - 359 7.2e-08 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 298, 345, 628
AccBSI CCGCTC 1 cut(s) 614
AccI GTMKAC 1 cut(s) 818
AccII CGCG 2 cut(s) 312, 317
AciI CCGC 8 cut(s) 212, 310, 317, 367, 449, 612, 846, 1004
AclWI GGATC 4 cut(s) 97, 110, 269, 459
AcoI YGGCCR 2 cut(s) 609, 956
AcsI RAATTY 1 cut(s) 766
AfaI GTAC 1 cut(s) 944
AfiI CCNNNNNNNGG 3 cut(s) 128, 316, 416
AflII CTTAAG 1 cut(s) 511
AgeI ACCGGT 2 cut(s) 409, 1017
AgsI TTSAA 1 cut(s) 805
AjiI CACGTC 1 cut(s) 997
AjnI CCWGG 1 cut(s) 325
AjuI GAANNNNNNNTTGG 2 cut(s) 467, 499
AloI GAACNNNNNNTCC 2 cut(s) 168, 200
AluBI AGCT 6 cut(s) 118, 336, 466, 483, 671, 905
AluI AGCT 6 cut(s) 118, 336, 466, 483, 671, 905
Alw21I GWGCWC 1 cut(s) 1069
Alw26I GTCTC 2 cut(s) 687, 830
AlwI GGATC 4 cut(s) 97, 110, 269, 459
AlwNI CAGNNNCTG 1 cut(s) 908
AoxI GGCC 5 cut(s) 364, 584, 609, 759, 956
ApaI GGGCCC 1 cut(s) 588
ApeKI GCWGC 6 cut(s) 71, 279, 336, 466, 905, 908
ApoI RAATTY 1 cut(s) 766
AsiGI ACCGGT 2 cut(s) 409, 1017
Asp700I GAANNNNTTC 1 cut(s) 395
AspLEI GCGC 1 cut(s) 692
AspS9I GGNCC 4 cut(s) 131, 551, 584, 585
AsuC2I CCSGG 3 cut(s) 303, 383, 843
AsuHPI GGTGA 5 cut(s) 250, 298, 317, 1007, 1021
AvaII GGWCC 2 cut(s) 131, 551
BaeGI GKGCMC 4 cut(s) 303, 383, 588, 631
BalI TGGCCA 1 cut(s) 958
BamHI GGATCC 1 cut(s) 102
BanI GGYRCC 3 cut(s) 298, 345, 628
BanII GRGCYC 2 cut(s) 510, 588
BauI CACGAG 2 cut(s) 615, 1068
Bbv12I GWGCWC 1 cut(s) 1069
BbvI GCAGC 6 cut(s) 58, 291, 323, 453, 892, 895
BccI CCATC 2 cut(s) 104, 1091
BceAI ACGGC 1 cut(s) 892
BciT130I CCWGG 1 cut(s) 327
BcnI CCSGG 3 cut(s) 303, 383, 843
BcoDI GTCTC 2 cut(s) 687, 830
BfaI CTAG 2 cut(s) 668, 912
BfmI CTRYAG 1 cut(s) 1103
BfoI RGCGCY 1 cut(s) 693
BfrI CTTAAG 1 cut(s) 511
BisI GCNGC 9 cut(s) 72, 280, 337, 367, 467, 612, 906, 909, 1004
BlsI GCNGC 9 cut(s) 73, 281, 338, 368, 468, 613, 907, 910, 1005
Bme1390I CCNGG 4 cut(s) 303, 327, 383, 843
Bme18I GGWCC 2 cut(s) 131, 551
BmgBI CACGTC 1 cut(s) 997
BmgT120I GGNCC 4 cut(s) 131, 551, 584, 585
BmiI GGNNCC 9 cut(s) 104, 133, 231, 300, 347, 421, 553, 586, 630
BmrFI CCNGG 4 cut(s) 303, 327, 383, 843
BmrI ACTGGG 2 cut(s) 117, 993
BmsI GCATC 2 cut(s) 301, 451
BmuI ACTGGG 2 cut(s) 117, 993
BoxI GACNNNNGTC 1 cut(s) 663
BpmI CTGGAG 1 cut(s) 885
BpuEI CTTGAG 2 cut(s) 179, 997
BpuMI CCSGG 3 cut(s) 303, 383, 843
BsaI GGTCTC 1 cut(s) 830
BsaJI CCNNGG 2 cut(s) 423, 841
BsaWI WCCGGW 3 cut(s) 409, 939, 1017
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 316, 416
Bse118I RCCGGY 2 cut(s) 409, 1017
Bse1I ACTGG 3 cut(s) 123, 988, 1062
Bse3DI GCAATG 1 cut(s) 504
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 2 cut(s) 423, 841
BseGI GGATG 3 cut(s) 442, 661, 784
BseLI CCNNNNNNNGG 3 cut(s) 128, 316, 416
BseMI GCAATG 1 cut(s) 504
BseNI ACTGG 3 cut(s) 123, 988, 1062
BseRI GAGGAG 1 cut(s) 375
BseSI GKGCMC 4 cut(s) 303, 383, 588, 631
BseXI GCAGC 6 cut(s) 58, 291, 323, 453, 892, 895
BseYI CCCAGC 1 cut(s) 257
BsgI GTGCAG 1 cut(s) 376
Bsh1236I CGCG 2 cut(s) 312, 317
BshFI GGCC 5 cut(s) 366, 586, 611, 761, 958
BshNI GGYRCC 3 cut(s) 298, 345, 628
BshTI ACCGGT 2 cut(s) 409, 1017
BsiHKAI GWGCWC 1 cut(s) 1069
BsiSI CCGG 7 cut(s) 303, 383, 410, 470, 843, 940, 1018
BslFI GGGAC 3 cut(s) 537, 875, 885
BslI CCNNNNNNNGG 3 cut(s) 128, 316, 416
BsmAI GTCTC 2 cut(s) 687, 830
BsmFI GGGAC 3 cut(s) 537, 875, 885
BsnI GGCC 5 cut(s) 366, 586, 611, 761, 958
Bso31I GGTCTC 1 cut(s) 830
Bsp120I GGGCCC 1 cut(s) 584
Bsp1286I GDGCHC 6 cut(s) 303, 383, 510, 588, 631, 1069
Bsp143I GATC 5 cut(s) 102, 240, 261, 451, 990
BspACI CCGC 8 cut(s) 212, 310, 317, 367, 449, 612, 846, 1004
BspANI GGCC 5 cut(s) 366, 586, 611, 761, 958
BspFNI CGCG 2 cut(s) 312, 317
BspLI GGNNCC 9 cut(s) 104, 133, 231, 300, 347, 421, 553, 586, 630
BspPI GGATC 4 cut(s) 97, 110, 269, 459
BspT107I GGYRCC 3 cut(s) 298, 345, 628
BspTI CTTAAG 1 cut(s) 511
BspTNI GGTCTC 1 cut(s) 830
BsrBI CCGCTC 1 cut(s) 614
BsrDI GCAATG 1 cut(s) 504
BsrFI RCCGGY 2 cut(s) 409, 1017
BsrI ACTGG 3 cut(s) 123, 988, 1062
BssAI RCCGGY 2 cut(s) 409, 1017
BssECI CCNNGG 2 cut(s) 423, 841
BssMI GATC 5 cut(s) 102, 240, 261, 451, 990
BssSI CACGAG 2 cut(s) 615, 1068
BssT1I CCWWGG 1 cut(s) 423
Bst2BI CACGAG 2 cut(s) 615, 1068
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 4 cut(s) 345, 565, 703, 889
BstAFI CTTAAG 1 cut(s) 511
BstAPI GCANNNNNTGC 1 cut(s) 298
BstC8I GCNNGC 2 cut(s) 350, 506
BstDEI CTNAG 1 cut(s) 730
BstEII GGTNACC 1 cut(s) 305
BstF5I GGATG 3 cut(s) 442, 661, 784
BstFNI CGCG 2 cut(s) 312, 317
BstH2I RGCGCY 1 cut(s) 693
BstHHI GCGC 1 cut(s) 692
BstKTI GATC 5 cut(s) 105, 243, 264, 454, 993
BstMAI GTCTC 2 cut(s) 687, 830
BstMBI GATC 5 cut(s) 102, 240, 261, 451, 990
BstMWI GCNNNNNNNGC 7 cut(s) 298, 345, 354, 363, 617, 626, 1064
BstNI CCWGG 1 cut(s) 327
BstPAI GACNNNNGTC 1 cut(s) 663
BstPI GGTNACC 1 cut(s) 305
BstSCI CCNGG 4 cut(s) 301, 325, 381, 841
BstSFI CTRYAG 1 cut(s) 1103
BstSLI GKGCMC 4 cut(s) 303, 383, 588, 631
BstUI CGCG 2 cut(s) 312, 317
BstV1I GCAGC 6 cut(s) 58, 291, 323, 453, 892, 895
BstX2I RGATCY 2 cut(s) 102, 451
BstXI CCANNNNNNTGG 1 cut(s) 595
BstYI RGATCY 2 cut(s) 102, 451
BsuRI GGCC 5 cut(s) 366, 586, 611, 761, 958
BtgZI GCGATG 1 cut(s) 195
BtrI CACGTC 1 cut(s) 997
BtsCI GGATG 3 cut(s) 442, 661, 784
BtsI GCAGTG 1 cut(s) 359
BtsIMutI CAGTG 2 cut(s) 359, 1069
Cac8I GCNNGC 2 cut(s) 350, 506
CaiI CAGNNNCTG 1 cut(s) 908
CfoI GCGC 1 cut(s) 692
Cfr10I RCCGGY 2 cut(s) 409, 1017
Cfr13I GGNCC 4 cut(s) 131, 551, 584, 585
CseI GACGC 2 cut(s) 301, 653
CsiI ACCWGGT 1 cut(s) 325
Csp6I GTAC 1 cut(s) 943
CspAI ACCGGT 2 cut(s) 409, 1017
CviAII CATG 9 cut(s) 67, 248, 388, 416, 763, 814, 880, 954, 1093
CviQI GTAC 1 cut(s) 943
DdeI CTNAG 1 cut(s) 730
DpnI GATC 5 cut(s) 104, 242, 263, 453, 992
DpnII GATC 5 cut(s) 102, 240, 261, 451, 990
EaeI YGGCCR 2 cut(s) 609, 956
Eco130I CCWWGG 1 cut(s) 423
Eco24I GRGCYC 2 cut(s) 510, 588
Eco31I GGTCTC 1 cut(s) 830
Eco47I GGWCC 2 cut(s) 131, 551
Eco91I GGTNACC 1 cut(s) 305
EcoO109I RGGNCCY 1 cut(s) 584
EcoO65I GGTNACC 1 cut(s) 305
EcoRI GAATTC 1 cut(s) 766
EcoRII CCWGG 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 423
EcoT38I GRGCYC 2 cut(s) 510, 588
ErhI CCWWGG 1 cut(s) 423
FaeI CATG 9 cut(s) 70, 251, 391, 419, 766, 817, 883, 957, 1096
FalI AAGNNNNNCTT 2 cut(s) 843, 875
FaqI GGGAC 3 cut(s) 537, 875, 885
FatI CATG 9 cut(s) 66, 247, 387, 415, 762, 813, 879, 953, 1092
FblI GTMKAC 1 cut(s) 818
Fnu4HI GCNGC 9 cut(s) 72, 280, 337, 367, 467, 612, 906, 909, 1004
FokI GGATG 3 cut(s) 429, 668, 791
FriOI GRGCYC 2 cut(s) 510, 588
Fsp4HI GCNGC 9 cut(s) 72, 280, 337, 367, 467, 612, 906, 909, 1004
FspBI CTAG 2 cut(s) 668, 912
GlaI GCGC 1 cut(s) 691
GluI GCNGC 9 cut(s) 72, 280, 337, 367, 467, 612, 906, 909, 1004
GsaI CCCAGC 1 cut(s) 261
GsuI CTGGAG 1 cut(s) 885
HaeII RGCGCY 1 cut(s) 693
HaeIII GGCC 5 cut(s) 366, 586, 611, 761, 958
HapII CCGG 7 cut(s) 303, 383, 410, 470, 843, 940, 1018
HgaI GACGC 2 cut(s) 301, 653
HhaI GCGC 1 cut(s) 692
Hin1II CATG 9 cut(s) 70, 251, 391, 419, 766, 817, 883, 957, 1096
Hin6I GCGC 1 cut(s) 690
HinP1I GCGC 1 cut(s) 690
HincII GTYRAC 3 cut(s) 91, 745, 819
HindII GTYRAC 3 cut(s) 91, 745, 819
HinfI GANTC 2 cut(s) 148, 1026
HpaII CCGG 7 cut(s) 303, 383, 410, 470, 843, 940, 1018
HphI GGTGA 5 cut(s) 250, 298, 317, 1007, 1021
Hpy166II GTNNAC 5 cut(s) 91, 187, 526, 745, 819
Hpy188I TCNGA 8 cut(s) 131, 147, 153, 245, 435, 578, 772, 866
Hpy188III TCNNGA 4 cut(s) 100, 196, 554, 976
Hpy8I GTNNAC 5 cut(s) 91, 187, 526, 745, 819
Hpy99I CGWCG 4 cut(s) 317, 540, 823, 998
HpyAV CCTTC 2 cut(s) 485, 796
HpyCH4III ACNGT 4 cut(s) 345, 565, 703, 889
HpyCH4IV ACGT 2 cut(s) 477, 996
HpyCH4V TGCA 2 cut(s) 357, 442
HpyF10VI GCNNNNNNNGC 7 cut(s) 298, 345, 354, 363, 617, 626, 1064
HpyF3I CTNAG 1 cut(s) 730
HpySE526I ACGT 2 cut(s) 477, 996
Hsp92II CATG 9 cut(s) 70, 251, 391, 419, 766, 817, 883, 957, 1096
HspAI GCGC 1 cut(s) 690
Kzo9I GATC 5 cut(s) 102, 240, 261, 451, 990
LmnI GCTCC 3 cut(s) 123, 229, 578
Lsp1109I GCAGC 6 cut(s) 58, 291, 323, 453, 892, 895
LweI GCATC 2 cut(s) 301, 451
MabI ACCWGGT 1 cut(s) 325
MaeI CTAG 2 cut(s) 668, 912
MaeII ACGT 2 cut(s) 477, 996
MaeIII GTNAC 3 cut(s) 305, 781, 1076
MalI GATC 5 cut(s) 104, 242, 263, 453, 992
MbiI CCGCTC 1 cut(s) 614
MboI GATC 5 cut(s) 102, 240, 261, 451, 990
MboII GAAGA 2 cut(s) 1000, 1058
MfeI CAATTG 1 cut(s) 17
MflI RGATCY 2 cut(s) 102, 451
MhlI GDGCHC 6 cut(s) 303, 383, 510, 588, 631, 1069
MlsI TGGCCA 1 cut(s) 958
MluCI AATT 3 cut(s) 17, 636, 766
MluNI TGGCCA 1 cut(s) 958
MmeI TCCRAC 2 cut(s) 844, 910
Mox20I TGGCCA 1 cut(s) 958
MroXI GAANNNNTTC 1 cut(s) 395
MscI TGGCCA 1 cut(s) 958
MseI TTAA 8 cut(s) 24, 54, 156, 225, 462, 512, 753, 1098
MslI CAYNNNNRTG 1 cut(s) 252
Msp20I TGGCCA 1 cut(s) 958
MspA1I CMGCKG 2 cut(s) 336, 905
MspCI CTTAAG 1 cut(s) 511
MspI CCGG 7 cut(s) 303, 383, 410, 470, 843, 940, 1018
MspR9I CCNGG 4 cut(s) 303, 327, 383, 843
MunI CAATTG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 327
MvnI CGCG 2 cut(s) 312, 317
MwoI GCNNNNNNNGC 7 cut(s) 298, 345, 354, 363, 617, 626, 1064
NciI CCSGG 3 cut(s) 303, 383, 843
NdeII GATC 5 cut(s) 102, 240, 261, 451, 990
NlaIII CATG 9 cut(s) 70, 251, 391, 419, 766, 817, 883, 957, 1096
NlaIV GGNNCC 9 cut(s) 104, 133, 231, 300, 347, 421, 553, 586, 630
NmeAIII GCCGAG 1 cut(s) 666
NmuCI GTSAC 2 cut(s) 305, 781
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 2 cut(s) 148, 1026
PflFI GACNNNGTC 1 cut(s) 311
PinAI ACCGGT 2 cut(s) 409, 1017
PkrI GCNGC 9 cut(s) 73, 281, 338, 368, 468, 613, 907, 910, 1005
PshAI GACNNNNGTC 1 cut(s) 663
Psp6I CCWGG 1 cut(s) 325
PspEI GGTNACC 1 cut(s) 305
PspFI CCCAGC 1 cut(s) 257
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 9 cut(s) 104, 133, 231, 300, 347, 421, 553, 586, 630
PspOMI GGGCCC 1 cut(s) 584
PspPI GGNCC 4 cut(s) 131, 551, 584, 585
PstNI CAGNNNCTG 1 cut(s) 908
PsuI RGATCY 2 cut(s) 102, 451
PsyI GACNNNGTC 1 cut(s) 311
PvuII CAGCTG 2 cut(s) 336, 905
RsaI GTAC 1 cut(s) 944
RsaNI GTAC 1 cut(s) 943
RseI CAYNNNNRTG 1 cut(s) 252
SalI GTCGAC 1 cut(s) 817
SaqAI TTAA 8 cut(s) 24, 54, 156, 225, 462, 512, 753, 1098
SatI GCNGC 9 cut(s) 72, 280, 337, 367, 467, 612, 906, 909, 1004
Sau3AI GATC 5 cut(s) 102, 240, 261, 451, 990
Sau96I GGNCC 4 cut(s) 131, 551, 584, 585
ScrFI CCNGG 4 cut(s) 303, 327, 383, 843
SduI GDGCHC 6 cut(s) 303, 383, 510, 588, 631, 1069
SexAI ACCWGGT 1 cut(s) 325
SfaNI GCATC 2 cut(s) 301, 451
SfcI CTRYAG 1 cut(s) 1103
SinI GGWCC 2 cut(s) 131, 551
SmiMI CAYNNNNRTG 1 cut(s) 252
SmlI CTYRAG 3 cut(s) 194, 511, 976
SmoI CTYRAG 3 cut(s) 194, 511, 976
Sse9I AATT 3 cut(s) 17, 636, 766
SsiI CCGC 8 cut(s) 212, 310, 317, 367, 449, 612, 846, 1004
SspMI CTAG 2 cut(s) 668, 912
StyD4I CCNGG 4 cut(s) 301, 325, 381, 841
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 4 cut(s) 345, 565, 703, 889
TaiI ACGT 2 cut(s) 480, 999
TaqI TCGA 6 cut(s) 538, 713, 789, 818, 969, 993
TasI AATT 3 cut(s) 17, 636, 766
TauI GCSGC 3 cut(s) 369, 614, 1006
TfiI GAWTC 2 cut(s) 148, 1026
Tru1I TTAA 8 cut(s) 24, 54, 156, 225, 462, 512, 753, 1098
Tru9I TTAA 8 cut(s) 24, 54, 156, 225, 462, 512, 753, 1098
TscAI CASTG 2 cut(s) 359, 1069
TseFI GTSAC 2 cut(s) 305, 781
TseI GCWGC 6 cut(s) 71, 279, 336, 466, 905, 908
Tsp45I GTSAC 2 cut(s) 305, 781
TspDTI ATGAA 7 cut(s) 218, 264, 404, 404, 711, 753, 779
TspRI CASTG 2 cut(s) 359, 1069
Tth111I GACNNNGTC 1 cut(s) 311
Vha464I CTTAAG 1 cut(s) 511
VpaK11BI GGWCC 2 cut(s) 131, 551
XapI RAATTY 1 cut(s) 766
XmiI GTMKAC 1 cut(s) 818
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 2 cut(s) 668, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.