AT5G52400

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
21272824 .. 21275755
2932 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G52400.1

Sequence Viewer

Length: 1560 bp
ATGGAGTTTTTTGAGATGTCTCGAGTTTGGTACATATTCTTCAAAGTTTTCGTCGTAGTTATTTGCCTCATGTTCTTGAAGCTCTTTCTGCGTTGTTGGATATGGCCAGTTCGAGCTCAAAAGAAGCTTAGAGGAAACGGATTTGTTGGTCCAGCTCCTAGTTTTCCATTTGGAAACCTTAATGACATGAAGAAACTGAAAATGGCCTCGGTTGTGGTGGATAATAGCAAATCTTCCACCATCATCAATCATGACATACACTCTATTGCACTTCCACATTTCGCTCGGTGGCAACAAGAATACGGGAAAGTATTTGTGTACTGGCTAGGGATAGAGCCGTTCGTGTACGTGGCCGATCCTGAATTCTTGAGTGTTATGTCGAAAGGGGTATTGGGGAAGAGTTGGGGAAAACCAAATGTTTTTAAGAAAGACAGAGAGCCAATGTTTGGTACCGGTTTGGTTATGGTCGAAGGAGATGATTGGACACGACATCGCCACATCATCACTCCTGCATTTGCCCCTCTTAATCTTAAGGTTATGACAAATATGATGGTGGAATCAGTCTCCAATATGTTGGACCGATGGGGCATACAAATAAACTCGGGTAATCCCGAATTCGACATGGAGAGCGAGATCATAGGAACAGCCGGTGAGATTATCGCCAAGACAAGCTTCGGTGTCACGGGAGAAAATGGAACTCAAGTCCTCAAAAACCTAAGAGCCGTGCAATTCGCTCTCTTCAACTCAAATCGCTACGTAGGCGTGCCATTCAGCAACATTTTGAGTTACAAGCAAACCGTTAAAGCGAAGGGGCTAGGTCATGAGATAGATGGTCTCCTTTTGTCGTTCATAAACAAACGGAAGATATCTTTGGCTGAAGGAGATGACCAAGGCCACGATCTTCTCGGAATGTTGCTTAAGGCCGATCAGAAAGGGAATTTTACGGCGAAAGAGCTTGTGGACGAATGCAAGACATTCTTCTTCGCTGGCCACGAGACAACGGCTTTAGCACTAACGTGGACGTTTATGCTTCTTGCGATCCATCCCGAGTGGCAAGACACGATCAGGGAAGAGATTAGAGAAGTCATCGGAGATTCCAAGATTGAGTATAACAAACTTGCCGGTCTAAAAAAGATGAGTTGGGTAATGAACGAGGTTCTCCGGCTATATCCACCGGCACCGAACGCACAACGACAAGCCCGAAATGACATTGAAGTGAACGGACGAGTGATTCCAAACGGAACAAACATTTGGATTGATGTGGTGGCGATGCACCACGACGTTGAGTTGTGGGGAGATGACGTTAACGAGTTTAAGCCTGAGAGATTCGACGGTAATTTGCACGGTGGTTGTAAGAATAAAATGGGTTACATGCCGTTTGGATTCGGAGGGAGAATGTGTATCGGTCGGAATTTGACCACCATGGAGTACAAGATTGTCTTGTCGTTGGTTTTGTCCCGGTTCGAAATCTCGGTTTCGCCCGGTTATCGCCATTCTCCGACGTATATGCTTTCTCTTAGACCGGGTTACGGTTTGCCTCTAATTATACGACCACTTTAG

Protein Analysis

519

Amino Acids

58.98

Weight (kDa)

8.83

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 94 - 502 1.5e-83 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 449
AccB1I GGYRCC 2 cut(s) 449, 1177
AccB7I CCANNNNNTGG 1 cut(s) 446
AclWI GGATC 2 cut(s) 350, 1033
AcoI YGGCCR 3 cut(s) 104, 351, 988
AcsI RAATTY 4 cut(s) 362, 614, 937, 1411
AcuI CTGAAG 1 cut(s) 897
AfaI GTAC 5 cut(s) 32, 320, 347, 451, 1430
AfiI CCNNNNNNNGG 2 cut(s) 446, 1529
AflII CTTAAG 2 cut(s) 530, 917
AgeI ACCGGT 1 cut(s) 452
AgsI TTSAA 4 cut(s) 43, 79, 742, 1214
AjuI GAANNNNNNNTTGG 8 cut(s) 374, 406, 656, 688, 854, 886, 1234, 1266
AleI CACNNNNGTG 1 cut(s) 1015
AluBI AGCT 6 cut(s) 82, 116, 127, 155, 672, 955
AluI AGCT 6 cut(s) 82, 116, 127, 155, 672, 955
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 4 cut(s) 24, 568, 839, 989
AlwI GGATC 2 cut(s) 350, 1033
Ama87I CYCGRG 3 cut(s) 21, 601, 1046
AoxI GGCC 6 cut(s) 104, 204, 351, 892, 921, 988
ApoI RAATTY 4 cut(s) 362, 614, 937, 1411
ArsI GACNNNNNNTTYG 2 cut(s) 36, 68
AsiGI ACCGGT 1 cut(s) 452
Asp718I GGTACC 1 cut(s) 449
AspS9I GGNCC 2 cut(s) 149, 577
AsuC2I CCSGG 3 cut(s) 1459, 1482, 1524
AsuHPI GGTGA 1 cut(s) 662
AsuII TTCGAA 1 cut(s) 1464
AvaI CYCGRG 3 cut(s) 21, 601, 1046
AvaII GGWCC 2 cut(s) 149, 577
BalI TGGCCA 2 cut(s) 106, 990
BanI GGYRCC 2 cut(s) 449, 1177
BanII GRGCYC 1 cut(s) 118
BarI GAAGNNNNNNTAC 2 cut(s) 23, 55
BauI CACGAG 1 cut(s) 992
Bbv12I GWGCWC 1 cut(s) 118
BccI CCATC 5 cut(s) 248, 544, 576, 824, 1050
BceAI ACGGC 5 cut(s) 322, 707, 960, 1017, 1360
BcgI CGANNNNNNTGC 2 cut(s) 1489, 1523
BcnI CCSGG 3 cut(s) 1459, 1482, 1524
BcoDI GTCTC 4 cut(s) 24, 568, 839, 989
BfaI CTAG 3 cut(s) 159, 326, 815
BfrI CTTAAG 2 cut(s) 530, 917
Bme1390I CCNGG 3 cut(s) 1459, 1482, 1524
Bme18I GGWCC 2 cut(s) 149, 577
BmeT110I CYCGRG 3 cut(s) 21, 601, 1046
BmgT120I GGNCC 2 cut(s) 149, 577
BmiI GGNNCC 2 cut(s) 451, 1179
BmrFI CCNGG 3 cut(s) 1459, 1482, 1524
BmsI GCATC 1 cut(s) 1260
Bpu14I TTCGAA 1 cut(s) 1464
BpuEI CTTGAG 2 cut(s) 388, 684
BpuMI CCSGG 3 cut(s) 1459, 1482, 1524
BsaAI YACGTR 2 cut(s) 349, 757
BsaI GGTCTC 1 cut(s) 839
BsaJI CCNNGG 3 cut(s) 207, 889, 1422
BsaWI WCCGGW 1 cut(s) 452
BsaXI ACNNNNNCTCC 4 cut(s) 1287, 1317, 1384, 1414
Bsc4I CCNNNNNNNGG 2 cut(s) 446, 1529
Bse118I RCCGGY 4 cut(s) 452, 647, 1121, 1174
Bse1I ACTGG 2 cut(s) 107, 326
BseDI CCNNGG 3 cut(s) 207, 889, 1422
BseGI GGATG 1 cut(s) 1042
BseLI CCNNNNNNNGG 2 cut(s) 446, 1529
BseMII CTCAG 1 cut(s) 1311
BseNI ACTGG 2 cut(s) 107, 326
Bsh1285I CGRYCG 1 cut(s) 1408
BshFI GGCC 6 cut(s) 106, 206, 353, 894, 923, 990
BshNI GGYRCC 2 cut(s) 449, 1177
BshTI ACCGGT 1 cut(s) 452
BsiEI CGRYCG 1 cut(s) 1408
BsiHKAI GWGCWC 1 cut(s) 118
BsiHKCI CYCGRG 3 cut(s) 21, 601, 1046
BsiSI CCGG 8 cut(s) 453, 648, 1122, 1162, 1175, 1459, 1482, 1523
BslFI GGGAC 1 cut(s) 1441
BslI CCNNNNNNNGG 2 cut(s) 446, 1529
BsmAI GTCTC 4 cut(s) 24, 568, 839, 989
BsmFI GGGAC 1 cut(s) 1441
BsmI GAATGC 1 cut(s) 971
BsnI GGCC 6 cut(s) 106, 206, 353, 894, 923, 990
Bso31I GGTCTC 1 cut(s) 839
BsoBI CYCGRG 3 cut(s) 21, 601, 1046
Bsp119I TTCGAA 1 cut(s) 1464
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 6 cut(s) 355, 633, 898, 925, 1038, 1062
Bsp19I CCATGG 1 cut(s) 1422
BspANI GGCC 6 cut(s) 106, 206, 353, 894, 923, 990
BspCNI CTCAG 1 cut(s) 1312
BspHI TCATGA 2 cut(s) 250, 820
BspLI GGNNCC 2 cut(s) 451, 1179
BspPI GGATC 2 cut(s) 350, 1033
BspT104I TTCGAA 1 cut(s) 1464
BspT107I GGYRCC 2 cut(s) 449, 1177
BspTI CTTAAG 2 cut(s) 530, 917
BspTNI GGTCTC 1 cut(s) 839
BsrFI RCCGGY 4 cut(s) 452, 647, 1121, 1174
BsrI ACTGG 2 cut(s) 107, 326
BssAI RCCGGY 4 cut(s) 452, 647, 1121, 1174
BssECI CCNNGG 3 cut(s) 207, 889, 1422
BssMI GATC 6 cut(s) 355, 633, 898, 925, 1038, 1062
BssSI CACGAG 1 cut(s) 992
BssT1I CCWWGG 2 cut(s) 889, 1422
Bst2BI CACGAG 1 cut(s) 992
Bst4CI ACNGT 4 cut(s) 799, 1334, 1346, 1532
Bst6I CTCTTC 3 cut(s) 392, 743, 1065
BstAFI CTTAAG 2 cut(s) 530, 917
BstBAI YACGTR 2 cut(s) 349, 757
BstBI TTCGAA 1 cut(s) 1464
BstC8I GCNNGC 2 cut(s) 764, 988
BstDEI CTNAG 4 cut(s) 128, 716, 1320, 1517
BstDSI CCRYGG 1 cut(s) 1422
BstF5I GGATG 1 cut(s) 1042
BstKTI GATC 6 cut(s) 358, 636, 901, 928, 1041, 1065
BstMAI GTCTC 4 cut(s) 24, 568, 839, 989
BstMBI GATC 6 cut(s) 355, 633, 898, 925, 1038, 1062
BstMCI CGRYCG 1 cut(s) 1408
BstMWI GCNNNNNNNGC 3 cut(s) 88, 759, 1184
BstNSI RCATGY 1 cut(s) 1375
BstSCI CCNGG 3 cut(s) 1457, 1480, 1522
BstSNI TACGTA 1 cut(s) 757
BstXI CCANNNNNNTGG 1 cut(s) 574
BsuRI GGCC 6 cut(s) 106, 206, 353, 894, 923, 990
BtgI CCRYGG 1 cut(s) 1422
BtgZI GCGATG 2 cut(s) 476, 1283
BtsCI GGATG 1 cut(s) 1042
Cac8I GCNNGC 2 cut(s) 764, 988
CciI TCATGA 2 cut(s) 250, 820
Cfr10I RCCGGY 4 cut(s) 452, 647, 1121, 1174
Cfr13I GGNCC 2 cut(s) 149, 577
Csp6I GTAC 5 cut(s) 31, 319, 346, 450, 1429
CspAI ACCGGT 1 cut(s) 452
CviAII CATG 7 cut(s) 70, 187, 251, 622, 821, 1372, 1423
CviQI GTAC 5 cut(s) 31, 319, 346, 450, 1429
DdeI CTNAG 4 cut(s) 128, 716, 1320, 1517
DpnI GATC 6 cut(s) 357, 635, 900, 927, 1040, 1064
DpnII GATC 6 cut(s) 355, 633, 898, 925, 1038, 1062
EaeI YGGCCR 3 cut(s) 104, 351, 988
Eam1104I CTCTTC 3 cut(s) 392, 743, 1065
EarI CTCTTC 3 cut(s) 392, 743, 1065
Ecl136II GAGCTC 1 cut(s) 116
Eco105I TACGTA 1 cut(s) 757
Eco130I CCWWGG 2 cut(s) 889, 1422
Eco24I GRGCYC 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 839
Eco32I GATATC 1 cut(s) 867
Eco47I GGWCC 2 cut(s) 149, 577
Eco53kI GAGCTC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 897
Eco88I CYCGRG 3 cut(s) 21, 601, 1046
EcoICRI GAGCTC 1 cut(s) 116
EcoRI GAATTC 2 cut(s) 362, 614
EcoRV GATATC 1 cut(s) 867
EcoT14I CCWWGG 2 cut(s) 889, 1422
EcoT38I GRGCYC 1 cut(s) 118
ErhI CCWWGG 2 cut(s) 889, 1422
FaeI CATG 7 cut(s) 73, 190, 254, 625, 824, 1375, 1426
FalI AAGNNNNNCTT 6 cut(s) 656, 688, 962, 994, 1424, 1456
FaqI GGGAC 1 cut(s) 1441
FatI CATG 7 cut(s) 69, 186, 250, 621, 820, 1371, 1422
FokI GGATG 1 cut(s) 1029
FriOI GRGCYC 1 cut(s) 118
FspBI CTAG 3 cut(s) 159, 326, 815
HaeIII GGCC 6 cut(s) 106, 206, 353, 894, 923, 990
HapII CCGG 8 cut(s) 453, 648, 1122, 1162, 1175, 1459, 1482, 1523
Hin1II CATG 7 cut(s) 73, 190, 254, 625, 824, 1375, 1426
HincII GTYRAC 1 cut(s) 1306
HindII GTYRAC 1 cut(s) 1306
HindIII AAGCTT 2 cut(s) 125, 670
HinfI GANTC 5 cut(s) 557, 1094, 1231, 1326, 1383
HpaI GTTAAC 1 cut(s) 1306
HpaII CCGG 8 cut(s) 453, 648, 1122, 1162, 1175, 1459, 1482, 1523
HphI GGTGA 1 cut(s) 662
Hpy166II GTNNAC 6 cut(s) 319, 346, 961, 1020, 1219, 1306
Hpy188I TCNGA 6 cut(s) 908, 930, 1091, 1388, 1410, 1500
Hpy188III TCNNGA 8 cut(s) 21, 76, 251, 359, 367, 611, 821, 1046
Hpy8I GTNNAC 6 cut(s) 319, 346, 961, 1020, 1219, 1306
Hpy99I CGWCG 4 cut(s) 56, 1283, 1334, 1504
HpyAV CCTTC 3 cut(s) 464, 802, 872
HpyCH4III ACNGT 4 cut(s) 799, 1334, 1346, 1532
HpyCH4IV ACGT 7 cut(s) 348, 756, 1016, 1022, 1281, 1302, 1502
HpyCH4V TGCA 6 cut(s) 269, 512, 727, 969, 1273, 1342
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 759, 1184
HpyF3I CTNAG 4 cut(s) 128, 716, 1320, 1517
HpySE526I ACGT 7 cut(s) 348, 756, 1016, 1022, 1281, 1302, 1502
Hsp92II CATG 7 cut(s) 73, 190, 254, 625, 824, 1375, 1426
KpnI GGTACC 1 cut(s) 453
KspAI GTTAAC 1 cut(s) 1306
Kzo9I GATC 6 cut(s) 355, 633, 898, 925, 1038, 1062
LmnI GCTCC 1 cut(s) 160
LweI GCATC 1 cut(s) 1260
MaeI CTAG 3 cut(s) 159, 326, 815
MaeII ACGT 7 cut(s) 348, 756, 1016, 1022, 1281, 1302, 1502
MaeIII GTNAC 4 cut(s) 679, 785, 1367, 1526
MalI GATC 6 cut(s) 357, 635, 900, 927, 1040, 1064
MboI GATC 6 cut(s) 355, 633, 898, 925, 1038, 1062
MhlI GDGCHC 1 cut(s) 118
MlsI TGGCCA 2 cut(s) 106, 990
MluCI AATT 7 cut(s) 362, 614, 728, 937, 1336, 1411, 1542
MluNI TGGCCA 2 cut(s) 106, 990
MmeI TCCRAC 4 cut(s) 77, 555, 1388, 1523
MnlI CCTC 8 cut(s) 77, 125, 217, 531, 716, 1147, 1382, 1548
Mox20I TGGCCA 2 cut(s) 106, 990
MscI TGGCCA 2 cut(s) 106, 990
MseI TTAA 8 cut(s) 180, 423, 525, 531, 801, 918, 1305, 1314
MslI CAYNNNNRTG 2 cut(s) 1015, 1214
Msp20I TGGCCA 2 cut(s) 106, 990
MspCI CTTAAG 2 cut(s) 530, 917
MspI CCGG 8 cut(s) 453, 648, 1122, 1162, 1175, 1459, 1482, 1523
MspR9I CCNGG 3 cut(s) 1459, 1482, 1524
Mva1269I GAATGC 1 cut(s) 971
MwoI GCNNNNNNNGC 3 cut(s) 88, 759, 1184
NciI CCSGG 3 cut(s) 1459, 1482, 1524
NcoI CCATGG 1 cut(s) 1422
NdeII GATC 6 cut(s) 355, 633, 898, 925, 1038, 1062
NlaIII CATG 7 cut(s) 73, 190, 254, 625, 824, 1375, 1426
NlaIV GGNNCC 2 cut(s) 451, 1179
NmuCI GTSAC 1 cut(s) 679
NspI RCATGY 1 cut(s) 1375
NspV TTCGAA 1 cut(s) 1464
OliI CACNNNNGTG 1 cut(s) 1015
PaeR7I CTCGAG 1 cut(s) 21
PagI TCATGA 2 cut(s) 250, 820
PcsI WCGNNNNNNNCGW 2 cut(s) 990, 1198
PctI GAATGC 1 cut(s) 971
PfeI GAWTC 5 cut(s) 557, 1094, 1231, 1326, 1383
PflMI CCANNNNNTGG 1 cut(s) 446
PinAI ACCGGT 1 cut(s) 452
Ppu21I YACGTR 2 cut(s) 349, 757
Psp124BI GAGCTC 1 cut(s) 118
PspN4I GGNNCC 2 cut(s) 451, 1179
PspPI GGNCC 2 cut(s) 149, 577
RsaI GTAC 5 cut(s) 32, 320, 347, 451, 1430
RsaNI GTAC 5 cut(s) 31, 319, 346, 450, 1429
RseI CAYNNNNRTG 2 cut(s) 1015, 1214
SacI GAGCTC 1 cut(s) 118
SaqAI TTAA 8 cut(s) 180, 423, 525, 531, 801, 918, 1305, 1314
Sau3AI GATC 6 cut(s) 355, 633, 898, 925, 1038, 1062
Sau96I GGNCC 2 cut(s) 149, 577
ScrFI CCNGG 3 cut(s) 1459, 1482, 1524
SduI GDGCHC 1 cut(s) 118
SfaNI GCATC 1 cut(s) 1260
Sfr274I CTCGAG 1 cut(s) 21
SfuI TTCGAA 1 cut(s) 1464
SinI GGWCC 2 cut(s) 149, 577
SlaI CTCGAG 1 cut(s) 21
SmiMI CAYNNNNRTG 2 cut(s) 1015, 1214
SmlI CTYRAG 5 cut(s) 21, 367, 530, 699, 917
SmoI CTYRAG 5 cut(s) 21, 367, 530, 699, 917
SnaBI TACGTA 1 cut(s) 757
Sse9I AATT 7 cut(s) 362, 614, 728, 937, 1336, 1411, 1542
SspMI CTAG 3 cut(s) 159, 326, 815
SstI GAGCTC 1 cut(s) 118
StyD4I CCNGG 3 cut(s) 1457, 1480, 1522
StyI CCWWGG 2 cut(s) 889, 1422
TaaI ACNGT 4 cut(s) 799, 1334, 1346, 1532
TaiI ACGT 7 cut(s) 351, 759, 1019, 1025, 1284, 1305, 1505
TaqI TCGA 7 cut(s) 22, 112, 380, 468, 618, 1329, 1464
TaqII GACCGA 2 cut(s) 594, 1394
TasI AATT 7 cut(s) 362, 614, 728, 937, 1336, 1411, 1542
TatI WGTACW 2 cut(s) 318, 1428
TfiI GAWTC 5 cut(s) 557, 1094, 1231, 1326, 1383
Tru1I TTAA 8 cut(s) 180, 423, 525, 531, 801, 918, 1305, 1314
Tru9I TTAA 8 cut(s) 180, 423, 525, 531, 801, 918, 1305, 1314
TseFI GTSAC 1 cut(s) 679
Tsp45I GTSAC 1 cut(s) 679
TspDTI ATGAA 3 cut(s) 203, 838, 1163
TspGWI ACGGA 4 cut(s) 153, 874, 1236, 1254
Van91I CCANNNNNTGG 1 cut(s) 446
Vha464I CTTAAG 2 cut(s) 530, 917
VpaK11BI GGWCC 2 cut(s) 149, 577
XapI RAATTY 4 cut(s) 362, 614, 937, 1411
XceI RCATGY 1 cut(s) 1375
XhoI CTCGAG 1 cut(s) 21
XspI CTAG 3 cut(s) 159, 326, 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.