Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002024

Physical Location & Seq

Genomic Coordinates Reverse (-)

65650770 .. 65651198

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG428900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGTGGAGACTACCACAATAATGCTAGACAAGTGGACTAACCAGCTCATGAATTCCAGCACTCAAGAAATTGATGTCGAGAAATCGATCACAGAAACAGCAGGGGAGATCATCGCCAAGGCCAGCTTCGGCATTAGTTACCGAAGTGACAGCCGAGTGTTTGTAAAATTCAGGGCCATACAAATCAGCCTCTTCCAAACAAAGCGCTTTCTGGGAGTTCCATTTGGGGAATTCTTGTACCCCAAGCAAGCCCTCGAGGCCAGAAGACTTGGAAAAGAAATTAACCAACTGTTCTCACCGCTCATAGCTTCACGAAAGAATTTGATTGGGTCAGTATCGTCTCCTGCGCAGCACGACCTGCTCGGATTATTACTTAACGTGAGTGATCAACAAGCAGGCAGCTTCAGAAAGGCTTTGACGACACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

142

Amino Acids

15.87

Weight (kDa)

9.57

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52400
fragaria_vesca	FvH4_7g29610 FvH4_7g29611 FvH4_7g29620
malus_domestica	MD01G1202600.v1.1 MD01G1202700.v1.1 MD01G1203000.v1.1 MD07G1272000.v1.1 MD07G1272300.v1.1 MD07G1272400.v1.1
prunus_persica	Prupe.2G295700_v2.0.a1 Prupe.2G295800_v2.0.a1
pyrus_communis	pycom01g21190 pycom01g21200 pycom07g24870 pycom07g24880
rosa_chinensis	RchiOBHm_Chr1g0377591 RchiOBHm_Chr1g0377601 RchiOBHm_Chr1g0377631
rosa_laevigata	RLG00000026513 RLG00000026514
rosa_multiflora	Rmu_co8133244.1_g000001 Rmu_sc0002832.1_g000010 Rmu_sc0002832.1_g000011 Rmu_sc0002832.1_g000012 Rmu_sc0012587.1_g000009 Rmu_sc0035943.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281180 Rroxscaffold_4G00281200 Rroxscaffold_4G00281210
rosa_rugosa	Rorug01G0403700 Rorug01G0403800
rosa_samantha	Rh1AG428800 Rh1AG428900 Rh1AG429000 Rh1AG429100 Rh1BG380200 Rh1BG380400 Rh1CG394400 Rh1CG394600 Rh1DG411400 Rh1DG411600
rosa_wichuraiana	Rw1G036970 Rw1G036980 Rw1G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	254
Acc16I	TGCGCA	1 cut(s)	348
Acc36I	ACCTGC	1 cut(s)	366
AccBSI	CCGCTC	1 cut(s)	301
AciI	CCGC	1 cut(s)	299
AcsI	RAATTY	4 cut(s)	52, 167, 230, 319
AcuI	CTGAAG	1 cut(s)	388
AfaI	GTAC	1 cut(s)	239
AfeI	AGCGCT	1 cut(s)	206
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	4 cut(s)	46, 126, 308, 402
AluI	AGCT	4 cut(s)	46, 126, 308, 402
Alw26I	GTCTC	2 cut(s)	2, 345
Ama87I	CYCGRG	1 cut(s)	254
Aor51HI	AGCGCT	1 cut(s)	206
AoxI	GGCC	3 cut(s)	120, 174, 258
ApeKI	GCWGC	2 cut(s)	349, 399
ApoI	RAATTY	4 cut(s)	52, 167, 230, 319
AspLEI	GCGC	2 cut(s)	207, 349
AspS9I	GGNCC	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	288
AvaI	CYCGRG	1 cut(s)	254
BbsI	GAAGAC	1 cut(s)	271
BbvI	GCAGC	2 cut(s)	361, 411
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	2, 345
BfaI	CTAG	1 cut(s)	26
BfoI	RGCGCY	1 cut(s)	208
BfuAI	ACCTGC	1 cut(s)	366
BglI	GCCNNNNNGGC	1 cut(s)	257
BisI	GCNGC	2 cut(s)	350, 400
BlsI	GCNGC	2 cut(s)	351, 401
BmeT110I	CYCGRG	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	48
Bsa29I	ATCGAT	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	117
BseCI	ATCGAT	1 cut(s)	86
BseDI	CCNNGG	1 cut(s)	117
BseXI	GCAGC	2 cut(s)	361, 411
BshFI	GGCC	3 cut(s)	122, 176, 260
BshVI	ATCGAT	1 cut(s)	86
BsiHKCI	CYCGRG	1 cut(s)	254
BsmAI	GTCTC	2 cut(s)	2, 345
BsmBI	CGTCTC	1 cut(s)	345
BsnI	GGCC	3 cut(s)	122, 176, 260
BsoBI	CYCGRG	1 cut(s)	254
Bsp143I	GATC	3 cut(s)	87, 108, 385
BspACI	CCGC	1 cut(s)	299
BspANI	GGCC	3 cut(s)	122, 176, 260
BspDI	ATCGAT	1 cut(s)	86
BspHI	TCATGA	1 cut(s)	48
BspMI	ACCTGC	1 cut(s)	366
BsrBI	CCGCTC	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	3 cut(s)	87, 108, 385
BssT1I	CCWWGG	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	291, 426
Bst6I	CTCTTC	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	358
BstC8I	GCNNGC	3 cut(s)	124, 249, 397
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	2 cut(s)	207, 349
BstKTI	GATC	3 cut(s)	90, 111, 388
BstMAI	GTCTC	2 cut(s)	2, 345
BstMBI	GATC	3 cut(s)	87, 108, 385
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 358
BstV1I	GCAGC	2 cut(s)	361, 411
BstV2I	GAAGAC	1 cut(s)	271
Bsu15I	ATCGAT	1 cut(s)	86
BsuRI	GGCC	3 cut(s)	122, 176, 260
BsuTUI	ATCGAT	1 cut(s)	86
BtgZI	GCGATG	1 cut(s)	97
BveI	ACCTGC	1 cut(s)	366
Cac8I	GCNNGC	3 cut(s)	124, 249, 397
CciI	TCATGA	1 cut(s)	48
CfoI	GCGC	2 cut(s)	207, 349
Cfr13I	GGNCC	1 cut(s)	174
ClaI	ATCGAT	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	1 cut(s)	49
CviQI	GTAC	1 cut(s)	238
DpnI	GATC	3 cut(s)	89, 110, 387
DpnII	GATC	3 cut(s)	87, 108, 385
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
Eco130I	CCWWGG	1 cut(s)	117
Eco47III	AGCGCT	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	388
Eco88I	CYCGRG	1 cut(s)	254
EcoRI	GAATTC	2 cut(s)	52, 230
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
Esp3I	CGTCTC	1 cut(s)	345
FaeI	CATG	1 cut(s)	52
FaiI	YATR	3 cut(s)	50, 179, 305
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FatI	CATG	1 cut(s)	48
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	2 cut(s)	350, 400
Fsp4HI	GCNGC	2 cut(s)	350, 400
FspBI	CTAG	1 cut(s)	26
FspI	TGCGCA	1 cut(s)	348
GlaI	GCGC	2 cut(s)	206, 348
GluI	GCNGC	2 cut(s)	350, 400
HaeII	RGCGCY	1 cut(s)	208
HaeIII	GGCC	3 cut(s)	122, 176, 260
HhaI	GCGC	2 cut(s)	207, 349
Hin1II	CATG	1 cut(s)	52
Hin6I	GCGC	2 cut(s)	205, 347
HinP1I	GCGC	2 cut(s)	205, 347
HphI	GGTGA	1 cut(s)	288
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	2 cut(s)	365, 407
Hpy188III	TCNNGA	4 cut(s)	49, 65, 79, 312
Hpy8I	GTNNAC	1 cut(s)	36
HpyCH4III	ACNGT	2 cut(s)	291, 426
HpyCH4IV	ACGT	1 cut(s)	378
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 358
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	1 cut(s)	52
HspAI	GCGC	2 cut(s)	205, 347
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	3 cut(s)	87, 108, 385
Lsp1109I	GCAGC	2 cut(s)	361, 411
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	2 cut(s)	137, 146
MalI	GATC	3 cut(s)	89, 110, 387
MbiI	CCGCTC	1 cut(s)	301
MboI	GATC	3 cut(s)	87, 108, 385
MboII	GAAGA	2 cut(s)	184, 276
MluCI	AATT	6 cut(s)	52, 69, 167, 230, 279, 319
MnlI	CCTC	3 cut(s)	200, 250, 263
MseI	TTAA	2 cut(s)	282, 375
MslI	CAYNNNNRTG	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	257, 358
NdeII	GATC	3 cut(s)	87, 108, 385
NlaIII	CATG	1 cut(s)	52
NmeAIII	GCCGAG	1 cut(s)	179
NmuCI	GTSAC	1 cut(s)	146
NsbI	TGCGCA	1 cut(s)	348
PaeR7I	CTCGAG	1 cut(s)	254
PagI	TCATGA	1 cut(s)	48
PkrI	GCNGC	2 cut(s)	351, 401
PspPI	GGNCC	1 cut(s)	174
PspXI	VCTCGAGB	1 cut(s)	254
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
RseI	CAYNNNNRTG	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	282, 375
SatI	GCNGC	2 cut(s)	350, 400
Sau3AI	GATC	3 cut(s)	87, 108, 385
Sau96I	GGNCC	1 cut(s)	174
SetI	ASST	6 cut(s)	48, 128, 310, 360, 381, 404
Sfr274I	CTCGAG	1 cut(s)	254
SlaI	CTCGAG	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	20
SmlI	CTYRAG	2 cut(s)	63, 254
SmoI	CTYRAG	2 cut(s)	63, 254
Sse9I	AATT	6 cut(s)	52, 69, 167, 230, 279, 319
SsiI	CCGC	1 cut(s)	299
SspMI	CTAG	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	2 cut(s)	291, 426
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	3 cut(s)	78, 86, 255
TasI	AATT	6 cut(s)	52, 69, 167, 230, 279, 319
Tru1I	TTAA	2 cut(s)	282, 375
Tru9I	TTAA	2 cut(s)	282, 375
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	2 cut(s)	349, 399
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	65
XapI	RAATTY	4 cut(s)	52, 167, 230, 319
XhoI	CTCGAG	1 cut(s)	254
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.