Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002024

Physical Location & Seq

Genomic Coordinates Forward (+)

64735400 .. 64736799

Gene Structure 1400 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G036980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGTCGATAGAGGTCACTGCAAAGAATTGGGGGAAACCTACTGTGTTCAAACGTGATAGGGCTCCCATGTTTGGTAATGGTCTTGTCATGTCTGAAGGTGATGAATGGGCTCTTCACCGCCATGTTATCACTCCTGCGTTTAACGACTTTAACTTTAACCCTACTAACTTGAAGTCTAATGTACGTCCAATCCTATATGTGAGCTTGATGGTGGAGACTACCACAATAATGCTAGACAAGTGGACTAACCAGCTCATGAATTCCAGCACTCAAGAAATTGATGTCGAGAAATCGATCACAGAAACAGCAGGGGAGATCATCGCCAAGGCCAGCTTCGGCATTAGTTACCGAAGTGACAGCCGAGTGTTTGTAAAATTCAGGGCCATACAAATCAGCCTCTTCCAAACAAAGCGCTTTCTGGGAGTTCCATTTGGGGAATTCTTGTACCCCAAGCAAGCCCTCGAGGCCAGAAGACTTGGAAAAGAAATTAACCAACTGTTCTCACCGCTCATAGCTTCACGAAAGAATTTGATTGGGTCAGTATCGTCTCCTGCGCAGCACGACCTGCTCGGATTATTACTTAACATGGGATGGGTGATGAATGAGATTTTCCGATTATACCCTTCAGCACCAAATGCACAAAGACAAGCTAAAGATGACATTCAAGTCAGTAAAAACCTGACAATCCCTAGTGGAACAAACGTGTGGATTGATATTGTGGCCATGCACCGGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

245

Amino Acids

27.7

Weight (kDa)

9.58

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	12 - 193	1.8e-08	Cytochrome P450
p450	PF00067	186 - 244	7.5e-08	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52400
fragaria_vesca	FvH4_7g29610 FvH4_7g29611 FvH4_7g29620
malus_domestica	MD01G1202600.v1.1 MD01G1202700.v1.1 MD01G1203000.v1.1 MD07G1272000.v1.1 MD07G1272300.v1.1 MD07G1272400.v1.1
prunus_persica	Prupe.2G295700_v2.0.a1 Prupe.2G295800_v2.0.a1
pyrus_communis	pycom01g21190 pycom01g21200 pycom07g24870 pycom07g24880
rosa_chinensis	RchiOBHm_Chr1g0377591 RchiOBHm_Chr1g0377601 RchiOBHm_Chr1g0377631
rosa_laevigata	RLG00000026513 RLG00000026514
rosa_multiflora	Rmu_co8133244.1_g000001 Rmu_sc0002832.1_g000010 Rmu_sc0002832.1_g000011 Rmu_sc0002832.1_g000012 Rmu_sc0012587.1_g000009 Rmu_sc0035943.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281180 Rroxscaffold_4G00281200 Rroxscaffold_4G00281210
rosa_rugosa	Rorug01G0403700 Rorug01G0403800
rosa_samantha	Rh1AG428800 Rh1AG428900 Rh1AG429000 Rh1AG429100 Rh1BG380200 Rh1BG380400 Rh1CG394400 Rh1CG394600 Rh1DG411400 Rh1DG411600
rosa_wichuraiana	Rw1G036970 Rw1G036980 Rw1G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	665
AbsI	CCTCGAGG	1 cut(s)	461
Acc16I	TGCGCA	1 cut(s)	555
Acc36I	ACCTGC	1 cut(s)	573
AccBSI	CCGCTC	1 cut(s)	508
AciI	CCGC	2 cut(s)	118, 506
AcoI	YGGCCR	2 cut(s)	720, 731
AcsI	RAATTY	4 cut(s)	259, 374, 437, 526
AcuI	CTGAAG	2 cut(s)	114, 609
AfaI	GTAC	2 cut(s)	183, 446
AfeI	AGCGCT	1 cut(s)	413
AfiI	CCNNNNNNNGG	2 cut(s)	71, 729
AflIII	ACRYGT	1 cut(s)	702
AgsI	TTSAA	3 cut(s)	49, 172, 665
AjuI	GAANNNNNNNTTGG	2 cut(s)	317, 349
AluBI	AGCT	5 cut(s)	204, 253, 333, 515, 650
AluI	AGCT	5 cut(s)	204, 253, 333, 515, 650
Alw26I	GTCTC	2 cut(s)	209, 552
Ama87I	CYCGRG	1 cut(s)	461
Aor51HI	AGCGCT	1 cut(s)	413
AoxI	GGCC	5 cut(s)	327, 381, 465, 720, 731
ApeKI	GCWGC	1 cut(s)	556
ApoI	RAATTY	4 cut(s)	259, 374, 437, 526
AspLEI	GCGC	2 cut(s)	414, 556
AspS9I	GGNCC	1 cut(s)	381
AsuHPI	GGTGA	4 cut(s)	107, 110, 495, 607
AvaI	CYCGRG	1 cut(s)	461
BalI	TGGCCA	1 cut(s)	722
BanII	GRGCYC	2 cut(s)	64, 112
BbsI	GAAGAC	1 cut(s)	478
BbvI	GCAGC	1 cut(s)	568
BccI	CCATC	2 cut(s)	202, 585
BcoDI	GTCTC	2 cut(s)	209, 552
BfaI	CTAG	2 cut(s)	233, 690
BfoI	RGCGCY	1 cut(s)	415
BfuAI	ACCTGC	1 cut(s)	573
BglI	GCCNNNNNGGC	1 cut(s)	464
BisI	GCNGC	1 cut(s)	557
BlsI	GCNGC	1 cut(s)	558
BmeT110I	CYCGRG	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	381
BmiI	GGNNCC	1 cut(s)	63
BpiI	GAAGAC	1 cut(s)	478
BpuEI	CTTGAG	1 cut(s)	255
Bsa29I	ATCGAT	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 729
Bse118I	RCCGGY	1 cut(s)	729
BseCI	ATCGAT	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	1 cut(s)	596
BseLI	CCNNNNNNNGG	2 cut(s)	71, 729
BseXI	GCAGC	1 cut(s)	568
BshFI	GGCC	5 cut(s)	329, 383, 467, 722, 733
BshVI	ATCGAT	1 cut(s)	293
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	1 cut(s)	730
BslI	CCNNNNNNNGG	2 cut(s)	71, 729
BsmAI	GTCTC	2 cut(s)	209, 552
BsmBI	CGTCTC	1 cut(s)	552
BsnI	GGCC	5 cut(s)	329, 383, 467, 722, 733
BsoBI	CYCGRG	1 cut(s)	461
Bsp1286I	GDGCHC	2 cut(s)	64, 112
Bsp143I	GATC	2 cut(s)	294, 315
BspACI	CCGC	2 cut(s)	118, 506
BspANI	GGCC	5 cut(s)	329, 383, 467, 722, 733
BspDI	ATCGAT	1 cut(s)	293
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	63
BspMI	ACCTGC	1 cut(s)	573
BspQI	GCTCTTC	1 cut(s)	117
BsrBI	CCGCTC	1 cut(s)	508
BsrFI	RCCGGY	1 cut(s)	729
BssAI	RCCGGY	1 cut(s)	729
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	2 cut(s)	294, 315
BssT1I	CCWWGG	1 cut(s)	324
Bst4CI	ACNGT	2 cut(s)	43, 498
Bst6I	CTCTTC	2 cut(s)	117, 404
BstAPI	GCANNNNNTGC	2 cut(s)	565, 635
BstC8I	GCNNGC	2 cut(s)	331, 456
BstF5I	GGATG	1 cut(s)	596
BstH2I	RGCGCY	1 cut(s)	415
BstHHI	GCGC	2 cut(s)	414, 556
BstKTI	GATC	2 cut(s)	297, 318
BstMAI	GTCTC	2 cut(s)	209, 552
BstMBI	GATC	2 cut(s)	294, 315
BstMWI	GCNNNNNNNGC	3 cut(s)	464, 565, 635
BstV1I	GCAGC	1 cut(s)	568
BstV2I	GAAGAC	1 cut(s)	478
Bsu15I	ATCGAT	1 cut(s)	293
BsuRI	GGCC	5 cut(s)	329, 383, 467, 722, 733
BsuTUI	ATCGAT	1 cut(s)	293
BtgZI	GCGATG	1 cut(s)	304
BtsCI	GGATG	1 cut(s)	596
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	1 cut(s)	15
BveI	ACCTGC	1 cut(s)	573
Cac8I	GCNNGC	2 cut(s)	331, 456
CciI	TCATGA	1 cut(s)	255
CfoI	GCGC	2 cut(s)	414, 556
Cfr10I	RCCGGY	1 cut(s)	729
Cfr13I	GGNCC	1 cut(s)	381
ClaI	ATCGAT	1 cut(s)	293
Csp6I	GTAC	2 cut(s)	182, 445
CviAII	CATG	7 cut(s)	67, 88, 122, 256, 586, 724, 735
CviQI	GTAC	2 cut(s)	182, 445
DpnI	GATC	2 cut(s)	296, 317
DpnII	GATC	2 cut(s)	294, 315
DrdI	GACNNNNNNGTC	1 cut(s)	665
DseDI	GACNNNNNNGTC	1 cut(s)	665
EaeI	YGGCCR	2 cut(s)	720, 731
Eam1104I	CTCTTC	2 cut(s)	117, 404
EarI	CTCTTC	2 cut(s)	117, 404
Eco130I	CCWWGG	1 cut(s)	324
Eco24I	GRGCYC	2 cut(s)	64, 112
Eco47III	AGCGCT	1 cut(s)	413
Eco57I	CTGAAG	2 cut(s)	114, 609
Eco88I	CYCGRG	1 cut(s)	461
EcoRI	GAATTC	2 cut(s)	259, 437
EcoT14I	CCWWGG	1 cut(s)	324
EcoT38I	GRGCYC	2 cut(s)	64, 112
ErhI	CCWWGG	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	552
FaeI	CATG	7 cut(s)	70, 91, 125, 259, 589, 727, 738
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FatI	CATG	7 cut(s)	66, 87, 121, 255, 585, 723, 734
Fnu4HI	GCNGC	1 cut(s)	557
FokI	GGATG	1 cut(s)	603
FriOI	GRGCYC	2 cut(s)	64, 112
Fsp4HI	GCNGC	1 cut(s)	557
FspBI	CTAG	2 cut(s)	233, 690
FspI	TGCGCA	1 cut(s)	555
GlaI	GCGC	2 cut(s)	413, 555
GluI	GCNGC	1 cut(s)	557
HaeII	RGCGCY	1 cut(s)	415
HaeIII	GGCC	5 cut(s)	329, 383, 467, 722, 733
HapII	CCGG	1 cut(s)	730
HhaI	GCGC	2 cut(s)	414, 556
Hin1II	CATG	7 cut(s)	70, 91, 125, 259, 589, 727, 738
Hin6I	GCGC	2 cut(s)	412, 554
HinP1I	GCGC	2 cut(s)	412, 554
HpaII	CCGG	1 cut(s)	730
HphI	GGTGA	4 cut(s)	107, 110, 495, 607
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188I	TCNGA	3 cut(s)	94, 572, 614
Hpy188III	TCNNGA	4 cut(s)	256, 272, 286, 519
Hpy8I	GTNNAC	1 cut(s)	243
HpyAV	CCTTC	2 cut(s)	89, 633
HpyCH4III	ACNGT	2 cut(s)	43, 498
HpyCH4IV	ACGT	3 cut(s)	52, 184, 702
HpyCH4V	TGCA	3 cut(s)	20, 638, 727
HpyF10VI	GCNNNNNNNGC	3 cut(s)	464, 565, 635
HpySE526I	ACGT	3 cut(s)	52, 184, 702
Hsp92II	CATG	7 cut(s)	70, 91, 125, 259, 589, 727, 738
HspAI	GCGC	2 cut(s)	412, 554
Kzo9I	GATC	2 cut(s)	294, 315
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	67
Lsp1109I	GCAGC	1 cut(s)	568
MaeI	CTAG	2 cut(s)	233, 690
MaeII	ACGT	3 cut(s)	52, 184, 702
MaeIII	GTNAC	3 cut(s)	13, 344, 353
MalI	GATC	2 cut(s)	296, 317
MbiI	CCGCTC	1 cut(s)	508
MboI	GATC	2 cut(s)	294, 315
MboII	GAAGA	3 cut(s)	104, 391, 483
MhlI	GDGCHC	2 cut(s)	64, 112
MlsI	TGGCCA	1 cut(s)	722
MluCI	AATT	7 cut(s)	25, 259, 276, 374, 437, 486, 526
MluNI	TGGCCA	1 cut(s)	722
MnlI	CCTC	4 cut(s)	4, 407, 457, 470
Mox20I	TGGCCA	1 cut(s)	722
MscI	TGGCCA	1 cut(s)	722
MseI	TTAA	5 cut(s)	141, 150, 156, 489, 582
MslI	CAYNNNNRTG	2 cut(s)	120, 227
Msp20I	TGGCCA	1 cut(s)	722
MspI	CCGG	1 cut(s)	730
MwoI	GCNNNNNNNGC	3 cut(s)	464, 565, 635
NdeII	GATC	2 cut(s)	294, 315
NlaIII	CATG	7 cut(s)	70, 91, 125, 259, 589, 727, 738
NlaIV	GGNNCC	1 cut(s)	63
NmeAIII	GCCGAG	1 cut(s)	386
NmuCI	GTSAC	2 cut(s)	13, 353
NsbI	TGCGCA	1 cut(s)	555
PaeR7I	CTCGAG	1 cut(s)	461
PagI	TCATGA	1 cut(s)	255
PciSI	GCTCTTC	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	558
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	381
PspXI	VCTCGAGB	1 cut(s)	461
RsaI	GTAC	2 cut(s)	183, 446
RsaNI	GTAC	2 cut(s)	182, 445
RseI	CAYNNNNRTG	2 cut(s)	120, 227
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	5 cut(s)	141, 150, 156, 489, 582
SatI	GCNGC	1 cut(s)	557
Sau3AI	GATC	2 cut(s)	294, 315
Sau96I	GGNCC	1 cut(s)	381
SduI	GDGCHC	2 cut(s)	64, 112
Sfr274I	CTCGAG	1 cut(s)	461
SlaI	CTCGAG	1 cut(s)	461
SmiMI	CAYNNNNRTG	2 cut(s)	120, 227
SmlI	CTYRAG	2 cut(s)	270, 461
SmoI	CTYRAG	2 cut(s)	270, 461
Sse9I	AATT	7 cut(s)	25, 259, 276, 374, 437, 486, 526
SsiI	CCGC	2 cut(s)	118, 506
SspMI	CTAG	2 cut(s)	233, 690
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	2 cut(s)	43, 498
TaiI	ACGT	3 cut(s)	55, 187, 705
TaqI	TCGA	4 cut(s)	5, 285, 293, 462
TasI	AATT	7 cut(s)	25, 259, 276, 374, 437, 486, 526
Tru1I	TTAA	5 cut(s)	141, 150, 156, 489, 582
Tru9I	TTAA	5 cut(s)	141, 150, 156, 489, 582
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	2 cut(s)	13, 353
TseI	GCWGC	1 cut(s)	556
Tsp45I	GTSAC	2 cut(s)	13, 353
TspDTI	ATGAA	3 cut(s)	117, 272, 614
TspRI	CASTG	1 cut(s)	22
XapI	RAATTY	4 cut(s)	259, 374, 437, 526
XhoI	CTCGAG	1 cut(s)	461
XspI	CTAG	2 cut(s)	233, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.