Rh1CG394400

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
66170396 .. 66173524
3129 bp
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UTR
Exon/CDS
Intron
Rh1CG394400.1

Sequence Viewer

Length: 1626 bp
ATGGAGCTCATGGCCATGGCAGTGATATTCTTCTTCTTCATCATTCTCTACTTGTTATGCAGGCTGTCCCTTTCTTGTTGGGTTTTTCCTTTCCTAACTCACCGGATGCTCAAGAAAAATGGTTTGTGTGGCCCATCTCCAAGTTTTCCATTAGGAAACCTCAGTGAGATGAAGAAGAAGACTAACACTGGAAGCTCTTCTTGCACTAATAGTATATCCCATGACATATACTCAACTCTATTCCCTCACTTTGCTCGGTGGAGGAATTCCCACGGCAAGGTGTTCGTATACTGGTTGGGAACCGAGCCATTTTTGTACATAGCAGATCCTGTTTTAGTGAAAAAACTATCAACTGAGGTCTCTGCAAAGAACTGGGGCAAACCTACTGTGTTCAAACGCGACAGAGCTCCCATGTTTGGCAATGGCCTCGTTATGTCTGAAGGTGATGAATGGGCTCTTCACCGCCAAGTTATCACTCCTGCGTTTAACCCTATCAACTTGAAGGCAATGGTGAGTTTGATGGTGGAGACTACCAGAACAATGCTAGACACCTGGACTACCCAGCTCAGAAATTCCGGCACTCGAGAAATTGATGTAGAGAAATCAATCAGAGAAACAGCAGGGGAGATCATTGCCAAGGCCAGCTTCAGCATTAGTTACCAAAGTGATCACCATGTGTTTGAAAAATTTAGGGCCCTGCAAATCAGCCTCTTCCAAACAAAACGCCTTTTGGGAGTTCCATTTGGGAAATTCTTGTACCTCAAGCAAGCCCTCGAGGCCAGCAGACTTGGAAAAGAAATTAACCAACTGTTCTCATCGATCATAGCTGCACGAAAGAAAGCCATTAGGTCAGGATCGTATACTATGCAGCACGACTTGCTTGGGTTATTGCTTAACCAGAGTGATCAACAAGGCAGCTTCAGAAAGGCTTTGACAACACAGCAGTTGGTGGATGAGTGCAAGACATTTTTCTTTTCAGGCCATGAAACATCGGCATTGTCTATCATATGGACGATGCTACTTCTGGCCACGAATCCGGAGTGGCAAAATGAACTGAGGGAAGAGATTAGGGAGGTGGTAGGGGATAAAGAACTTCATTTCAACATGCTTGCTGGACTAAAGAAGATGGGATGGGTCATGAATGAGGTTTTCCGATTATATCCTTCAGGACCAAATGCACAGAGGCAAGCTAAAGATGACATTCGAGTGAGTGAAGACCTAACAATCCCTAGAGGAACCAATTTGTGGATTGACATTGTGGGCATGCACCATGACTCAGAGCTATGGGGTGAGGATGTGCATGAGTTCAAGCCAGAGAGGTTTAAGGATGATATTAATGGTGGGTGCACGCACAAAATGGGTTTCTTACCTTTTGGGTTTGGAGGAAGGATGTGCATTGGTAGAAACTTGAGCTTTTTGGAGTATAAGATTGTGCTGACCCTAATTCTGTCTAGGTTTTCTTTTACTATTTCTCCTACATATTGTCACTGTCCTTCAACTTTACTCACTATGAGGCCGTCTTATGGGTCTGCCTCTAGTATTCCAGCCCTTGGACTGAAGATTGTGCCTACCTTTAGAGTTTGTAAAATCCCAATCTTAAGTTGTTTCAAGGCCCACAATTTGTAA

Protein Analysis

541

Amino Acids

61.52

Weight (kDa)

9.26

Isoelectric Point (pI)

34.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 83 - 498 1.4e-76 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 773
AccB7I CCANNNNNTGG 2 cut(s) 1245, 1550
AccI GTMKAC 2 cut(s) 288, 860
AccII CGCG 1 cut(s) 399
AccIII TCCGGA 1 cut(s) 1036
AciI CCGC 1 cut(s) 463
AclWI GGATC 2 cut(s) 320, 862
AcoI YGGCCR 2 cut(s) 12, 1026
AcsI RAATTY 4 cut(s) 265, 571, 686, 749
AcuI CTGAAG 5 cut(s) 459, 631, 904, 1149, 1577
AdeI CACNNNGTG 1 cut(s) 676
AfaI GTAC 2 cut(s) 317, 758
AfiI CCNNNNNNNGG 5 cut(s) 277, 416, 1245, 1523, 1550
AflII CTTAAG 1 cut(s) 1597
AgsI TTSAA 7 cut(s) 394, 502, 683, 1102, 1309, 1497, 1609
AjnI CCWGG 1 cut(s) 551
AjuI GAANNNNNNNTTGG 2 cut(s) 629, 661
Alw21I GWGCWC 3 cut(s) 9, 409, 1349
Alw26I GTCTC 2 cut(s) 364, 521
Alw44I GTGCAC 1 cut(s) 1345
AlwI GGATC 2 cut(s) 320, 862
AlwNI CAGNNNCTG 1 cut(s) 329
Ama87I CYCGRG 2 cut(s) 582, 773
Aor13HI TCCGGA 1 cut(s) 1036
ApaI GGGCCC 1 cut(s) 697
ApaLI GTGCAC 1 cut(s) 1345
ApeKI GCWGC 3 cut(s) 827, 868, 915
ApoI RAATTY 4 cut(s) 265, 571, 686, 749
AseI ATTAAT 1 cut(s) 1335
Asp700I GAANNNNTTC 1 cut(s) 196
AspS9I GGNCC 5 cut(s) 131, 693, 694, 1169, 1612
AsuHPI GGTGA 6 cut(s) 92, 452, 455, 523, 662, 1301
AvaI CYCGRG 2 cut(s) 582, 773
AvaII GGWCC 1 cut(s) 1169
BaeGI GKGCMC 2 cut(s) 697, 1349
BalI TGGCCA 2 cut(s) 14, 1028
BanII GRGCYC 4 cut(s) 9, 409, 457, 697
BbsI GAAGAC 2 cut(s) 185, 1221
Bbv12I GWGCWC 3 cut(s) 9, 409, 1349
BbvI GCAGC 3 cut(s) 814, 880, 927
BccI CCATC 4 cut(s) 142, 514, 1120, 1125
BceAI ACGGC 2 cut(s) 289, 1501
BcgI CGANNNNNNTGC 4 cut(s) 265, 299, 409, 443
BciT130I CCWGG 1 cut(s) 553
BclI TGATCA 2 cut(s) 667, 904
BcoDI GTCTC 2 cut(s) 364, 521
BfaI CTAG 4 cut(s) 545, 1230, 1452, 1536
BfrI CTTAAG 1 cut(s) 1597
BglI GCCNNNNNGGC 1 cut(s) 776
BisI GCNGC 3 cut(s) 828, 869, 916
BlsI GCNGC 3 cut(s) 829, 870, 917
Bme1390I CCNGG 1 cut(s) 553
Bme18I GGWCC 1 cut(s) 1169
BmeT110I CYCGRG 2 cut(s) 582, 773
BmgT120I GGNCC 5 cut(s) 131, 693, 694, 1169, 1612
BmiI GGNNCC 3 cut(s) 301, 695, 1237
BmrFI CCNGG 1 cut(s) 553
BmrI ACTGGG 1 cut(s) 382
BmsI GCATC 2 cut(s) 96, 1005
BmuI ACTGGG 1 cut(s) 382
BpiI GAAGAC 2 cut(s) 185, 1221
BpuEI CTTGAG 3 cut(s) 95, 746, 1429
Bsa29I ATCGAT 1 cut(s) 818
BsaI GGTCTC 1 cut(s) 364
BsaJI CCNNGG 4 cut(s) 15, 271, 636, 1549
BsaWI WCCGGW 2 cut(s) 102, 1036
BsaXI ACNNNNNCTCC 2 cut(s) 1456, 1486
Bsc4I CCNNNNNNNGG 5 cut(s) 277, 416, 1245, 1523, 1550
Bse1I ACTGG 3 cut(s) 193, 296, 377
Bse3DI GCAATG 3 cut(s) 427, 513, 630
BseAI TCCGGA 1 cut(s) 1036
BseBI CCWGG 1 cut(s) 553
BseCI ATCGAT 1 cut(s) 818
BseDI CCNNGG 4 cut(s) 15, 271, 636, 1549
BseGI GGATG 6 cut(s) 111, 958, 1136, 1300, 1333, 1395
BseLI CCNNNNNNNGG 5 cut(s) 277, 416, 1245, 1523, 1550
BseMI GCAATG 3 cut(s) 427, 513, 630
BseMII CTCAG 5 cut(s) 175, 345, 580, 1046, 1290
BseNI ACTGG 3 cut(s) 193, 296, 377
BseSI GKGCMC 2 cut(s) 697, 1349
BseXI GCAGC 3 cut(s) 814, 880, 927
BseYI CCCAGC 1 cut(s) 561
BsgI GTGCAG 1 cut(s) 813
Bsh1236I CGCG 1 cut(s) 399
BshVI ATCGAT 1 cut(s) 818
BsiHKAI GWGCWC 3 cut(s) 9, 409, 1349
BsiHKCI CYCGRG 2 cut(s) 582, 773
BsiSI CCGG 3 cut(s) 103, 576, 1037
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 5 cut(s) 277, 416, 1245, 1523, 1550
BsmAI GTCTC 2 cut(s) 364, 521
BsmFI GGGAC 1 cut(s) 52
Bso31I GGTCTC 1 cut(s) 364
BsoBI CYCGRG 2 cut(s) 582, 773
Bsp120I GGGCCC 1 cut(s) 693
Bsp1286I GDGCHC 5 cut(s) 9, 409, 457, 697, 1349
Bsp13I TCCGGA 1 cut(s) 1036
Bsp1407I TGTACA 1 cut(s) 315
Bsp143I GATC 6 cut(s) 325, 627, 667, 819, 854, 904
Bsp19I CCATGG 1 cut(s) 15
BspACI CCGC 1 cut(s) 463
BspCNI CTCAG 5 cut(s) 174, 346, 579, 1047, 1289
BspDI ATCGAT 1 cut(s) 818
BspEI TCCGGA 1 cut(s) 1036
BspFNI CGCG 1 cut(s) 399
BspHI TCATGA 1 cut(s) 1137
BspLI GGNNCC 3 cut(s) 301, 695, 1237
BspPI GGATC 2 cut(s) 320, 862
BspQI GCTCTTC 2 cut(s) 202, 462
BspTI CTTAAG 1 cut(s) 1597
BspTNI GGTCTC 1 cut(s) 364
BsrDI GCAATG 3 cut(s) 427, 513, 630
BsrGI TGTACA 1 cut(s) 315
BsrI ACTGG 3 cut(s) 193, 296, 377
BssECI CCNNGG 4 cut(s) 15, 271, 636, 1549
BssMI GATC 6 cut(s) 325, 627, 667, 819, 854, 904
BssNAI GTATAC 2 cut(s) 289, 861
BssT1I CCWWGG 3 cut(s) 15, 636, 1549
Bst1107I GTATAC 2 cut(s) 289, 861
Bst2UI CCWGG 1 cut(s) 553
Bst4CI ACNGT 3 cut(s) 388, 810, 1490
Bst6I CTCTTC 4 cut(s) 202, 462, 716, 1056
BstAFI CTTAAG 1 cut(s) 1597
BstAPI GCANNNNNTGC 1 cut(s) 877
BstAUI TGTACA 1 cut(s) 315
BstC8I GCNNGC 8 cut(s) 62, 643, 768, 781, 1110, 1188, 1265, 1349
BstDEI CTNAG 5 cut(s) 161, 354, 566, 1055, 1276
BstDSI CCRYGG 2 cut(s) 15, 271
BstF5I GGATG 6 cut(s) 111, 958, 1136, 1300, 1333, 1395
BstFNI CGCG 1 cut(s) 399
BstKTI GATC 6 cut(s) 328, 630, 670, 822, 857, 907
BstMAI GTCTC 2 cut(s) 364, 521
BstMBI GATC 6 cut(s) 325, 627, 667, 819, 854, 904
BstMWI GCNNNNNNNGC 3 cut(s) 201, 776, 877
BstNI CCWGG 1 cut(s) 553
BstNSI RCATGY 2 cut(s) 1108, 1267
BstSCI CCNGG 1 cut(s) 551
BstSLI GKGCMC 2 cut(s) 697, 1349
BstUI CGCG 1 cut(s) 399
BstV1I GCAGC 3 cut(s) 814, 880, 927
BstV2I GAAGAC 2 cut(s) 185, 1221
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BstZ17I GTATAC 2 cut(s) 289, 861
Bsu15I ATCGAT 1 cut(s) 818
BsuTUI ATCGAT 1 cut(s) 818
BtgI CCRYGG 2 cut(s) 15, 271
BtsCI GGATG 6 cut(s) 111, 958, 1136, 1300, 1333, 1395
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 4 cut(s) 27, 169, 186, 1486
Cac8I GCNNGC 8 cut(s) 62, 643, 768, 781, 1110, 1188, 1265, 1349
CaiI CAGNNNCTG 1 cut(s) 329
CciI TCATGA 1 cut(s) 1137
Cfr13I GGNCC 5 cut(s) 131, 693, 694, 1169, 1612
ClaI ATCGAT 1 cut(s) 818
Csp6I GTAC 2 cut(s) 316, 757
CviQI GTAC 2 cut(s) 316, 757
DdeI CTNAG 5 cut(s) 161, 354, 566, 1055, 1276
DpnI GATC 6 cut(s) 327, 629, 669, 821, 856, 906
DpnII GATC 6 cut(s) 325, 627, 667, 819, 854, 904
DraIII CACNNNGTG 1 cut(s) 676
EaeI YGGCCR 2 cut(s) 12, 1026
Eam1104I CTCTTC 4 cut(s) 202, 462, 716, 1056
EarI CTCTTC 4 cut(s) 202, 462, 716, 1056
Ecl136II GAGCTC 2 cut(s) 7, 407
Eco130I CCWWGG 3 cut(s) 15, 636, 1549
Eco24I GRGCYC 4 cut(s) 9, 409, 457, 697
Eco31I GGTCTC 1 cut(s) 364
Eco47I GGWCC 1 cut(s) 1169
Eco53kI GAGCTC 2 cut(s) 7, 407
Eco57I CTGAAG 5 cut(s) 459, 631, 904, 1149, 1577
Eco88I CYCGRG 2 cut(s) 582, 773
EcoICRI GAGCTC 2 cut(s) 7, 407
EcoO109I RGGNCCY 2 cut(s) 693, 694
EcoRI GAATTC 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 551
EcoT14I CCWWGG 3 cut(s) 15, 636, 1549
EcoT38I GRGCYC 4 cut(s) 9, 409, 457, 697
ErhI CCWWGG 3 cut(s) 15, 636, 1549
FalI AAGNNNNNCTT 4 cut(s) 184, 216, 629, 661
FaqI GGGAC 1 cut(s) 52
FauNDI CATATG 1 cut(s) 1007
FbaI TGATCA 2 cut(s) 667, 904
FblI GTMKAC 2 cut(s) 288, 860
Fnu4HI GCNGC 3 cut(s) 828, 869, 916
FokI GGATG 6 cut(s) 118, 965, 1143, 1307, 1340, 1402
FriOI GRGCYC 4 cut(s) 9, 409, 457, 697
Fsp4HI GCNGC 3 cut(s) 828, 869, 916
FspBI CTAG 4 cut(s) 545, 1230, 1452, 1536
GluI GCNGC 3 cut(s) 828, 869, 916
GsaI CCCAGC 1 cut(s) 565
HapII CCGG 3 cut(s) 103, 576, 1037
HinfI GANTC 2 cut(s) 1033, 1274
HpaII CCGG 3 cut(s) 103, 576, 1037
HphI GGTGA 6 cut(s) 92, 452, 455, 523, 662, 1301
Hpy166II GTNNAC 3 cut(s) 289, 861, 1347
Hpy188I TCNGA 6 cut(s) 439, 569, 611, 923, 1154, 1279
Hpy188III TCNNGA 6 cut(s) 112, 584, 852, 1037, 1138, 1167
Hpy8I GTNNAC 3 cut(s) 289, 861, 1347
HpyAV CCTTC 5 cut(s) 434, 496, 1173, 1380, 1503
HpyCH4III ACNGT 3 cut(s) 388, 810, 1490
HpyF10VI GCNNNNNNNGC 3 cut(s) 201, 776, 877
HpyF3I CTNAG 5 cut(s) 161, 354, 566, 1055, 1276
Kpn2I TCCGGA 1 cut(s) 1036
Ksp22I TGATCA 2 cut(s) 667, 904
Kzo9I GATC 6 cut(s) 325, 627, 667, 819, 854, 904
LguI GCTCTTC 2 cut(s) 202, 462
LmnI GCTCC 2 cut(s) 4, 412
Lsp1109I GCAGC 3 cut(s) 814, 880, 927
LweI GCATC 2 cut(s) 96, 1005
MaeI CTAG 4 cut(s) 545, 1230, 1452, 1536
MaeIII GTNAC 2 cut(s) 656, 1484
MalI GATC 6 cut(s) 327, 629, 669, 821, 856, 906
MboI GATC 6 cut(s) 325, 627, 667, 819, 854, 904
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 5 cut(s) 9, 409, 457, 697, 1349
MlsI TGGCCA 2 cut(s) 14, 1028
MluCI AATT 9 cut(s) 265, 571, 588, 686, 749, 798, 1240, 1443, 1618
MluNI TGGCCA 2 cut(s) 14, 1028
MlyI GAGTC 1 cut(s) 1268
Mox20I TGGCCA 2 cut(s) 14, 1028
MroI TCCGGA 1 cut(s) 1036
MroXI GAANNNNTTC 1 cut(s) 196
MscI TGGCCA 2 cut(s) 14, 1028
MseI TTAA 6 cut(s) 486, 801, 894, 1323, 1335, 1598
MslI CAYNNNNRTG 3 cut(s) 14, 20, 1205
Msp20I TGGCCA 2 cut(s) 14, 1028
MspCI CTTAAG 1 cut(s) 1597
MspI CCGG 3 cut(s) 103, 576, 1037
MspR9I CCNGG 1 cut(s) 553
MvaI CCWGG 1 cut(s) 553
MvnI CGCG 1 cut(s) 399
MwoI GCNNNNNNNGC 3 cut(s) 201, 776, 877
NcoI CCATGG 1 cut(s) 15
NdeI CATATG 1 cut(s) 1007
NdeII GATC 6 cut(s) 325, 627, 667, 819, 854, 904
NlaIV GGNNCC 3 cut(s) 301, 695, 1237
NmuCI GTSAC 1 cut(s) 1484
NspI RCATGY 2 cut(s) 1108, 1267
PaeI GCATGC 1 cut(s) 1267
PaeR7I CTCGAG 2 cut(s) 582, 773
PagI TCATGA 1 cut(s) 1137
PciSI GCTCTTC 2 cut(s) 202, 462
PdmI GAANNNNTTC 1 cut(s) 196
PfeI GAWTC 1 cut(s) 1033
PflMI CCANNNNNTGG 2 cut(s) 1245, 1550
PkrI GCNGC 3 cut(s) 829, 870, 917
PleI GAGTC 1 cut(s) 1268
PpsI GAGTC 1 cut(s) 1268
PshBI ATTAAT 1 cut(s) 1335
Psp124BI GAGCTC 2 cut(s) 9, 409
Psp6I CCWGG 1 cut(s) 551
PspFI CCCAGC 1 cut(s) 561
PspGI CCWGG 1 cut(s) 551
PspN4I GGNNCC 3 cut(s) 301, 695, 1237
PspOMI GGGCCC 1 cut(s) 693
PspPI GGNCC 5 cut(s) 131, 693, 694, 1169, 1612
PspXI VCTCGAGB 1 cut(s) 773
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 1 cut(s) 325
RsaI GTAC 2 cut(s) 317, 758
RsaNI GTAC 2 cut(s) 316, 757
RseI CAYNNNNRTG 3 cut(s) 14, 20, 1205
SacI GAGCTC 2 cut(s) 9, 409
SapI GCTCTTC 2 cut(s) 202, 462
SaqAI TTAA 6 cut(s) 486, 801, 894, 1323, 1335, 1598
SatI GCNGC 3 cut(s) 828, 869, 916
Sau3AI GATC 6 cut(s) 325, 627, 667, 819, 854, 904
Sau96I GGNCC 5 cut(s) 131, 693, 694, 1169, 1612
SchI GAGTC 1 cut(s) 1268
ScrFI CCNGG 1 cut(s) 553
SduI GDGCHC 5 cut(s) 9, 409, 457, 697, 1349
SfaNI GCATC 2 cut(s) 96, 1005
Sfr274I CTCGAG 2 cut(s) 582, 773
SinI GGWCC 1 cut(s) 1169
SlaI CTCGAG 2 cut(s) 582, 773
SmiMI CAYNNNNRTG 3 cut(s) 14, 20, 1205
SmlI CTYRAG 6 cut(s) 110, 582, 761, 773, 1408, 1597
SmoI CTYRAG 6 cut(s) 110, 582, 761, 773, 1408, 1597
SphI GCATGC 1 cut(s) 1267
Sse9I AATT 9 cut(s) 265, 571, 588, 686, 749, 798, 1240, 1443, 1618
SsiI CCGC 1 cut(s) 463
SspMI CTAG 4 cut(s) 545, 1230, 1452, 1536
SstI GAGCTC 2 cut(s) 9, 409
StyD4I CCNGG 1 cut(s) 551
StyI CCWWGG 3 cut(s) 15, 636, 1549
TaaI ACNGT 3 cut(s) 388, 810, 1490
TaqI TCGA 4 cut(s) 583, 774, 818, 1204
TasI AATT 9 cut(s) 265, 571, 588, 686, 749, 798, 1240, 1443, 1618
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 1 cut(s) 1033
Tru1I TTAA 6 cut(s) 486, 801, 894, 1323, 1335, 1598
Tru9I TTAA 6 cut(s) 486, 801, 894, 1323, 1335, 1598
TscAI CASTG 4 cut(s) 27, 169, 193, 1493
TseFI GTSAC 1 cut(s) 1484
TseI GCWGC 3 cut(s) 827, 868, 915
Tsp45I GTSAC 1 cut(s) 1484
TspDTI ATGAA 7 cut(s) 28, 185, 462, 999, 1065, 1085, 1154
TspRI CASTG 4 cut(s) 27, 169, 193, 1493
Van91I CCANNNNNTGG 2 cut(s) 1245, 1550
Vha464I CTTAAG 1 cut(s) 1597
VneI GTGCAC 1 cut(s) 1345
VpaK11BI GGWCC 1 cut(s) 1169
VspI ATTAAT 1 cut(s) 1335
XapI RAATTY 4 cut(s) 265, 571, 686, 749
XceI RCATGY 2 cut(s) 1108, 1267
XhoI CTCGAG 2 cut(s) 582, 773
XmiI GTMKAC 2 cut(s) 288, 860
XmnI GAANNNNTTC 1 cut(s) 196
XspI CTAG 4 cut(s) 545, 1230, 1452, 1536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.