Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002024

Physical Location & Seq

Genomic Coordinates Forward (+)

33871571 .. 33874136

Gene Structure 2566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1272400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCAATGGTGAGCTTAATGGTGGAGACCACCACCAAAATGCTAGACAATTGGACGACCCTCGTAGATTCCGGCACTCAAGAATTCGACGTCGAGAGAGAAATCACGGCAACCGCTGGAGAGATCATCGCCAAAACCAGCTTTGGCATCAGCTACCAAAGTGGCCGGCTAGTGTTCGAAAAACTAAGAGCCTTGCAAACGACACTATTCAAAACGATCCGTTTCGTGGGAGTTCCTTTCGGGAAAATGATGCACCCTAAGAAAGCCGTAGAGGCCAGAAAACTTGGGCAAGGAATTAACCAATTGTTCTTGTCACTAATTGACGAAAGACGCAAAATGATCAGAGGGTCGGGGCCGCAGAACGACCTGCTTGGCTTGTTGCTTAAACGGACTGAACATGGAAGGTTTACAAAGTCCTTAACTACAAAAGAAGTTGTGGATGAGTGCAAGACATTCTTCTTTGAAGGTCATGAGACAACTGCATTGGCAATCACATGGACAATGTTGCTCCTGGCCACCCACCAGGATTGGCAAGATCAGTTGAGAGAGGAGATTAGGGAAGTGGTCGGAGACAAAGAAATTGACGTGAACATGCTTTCTGGACTAAAGAAGATGGGATGGGTGATGATGAACGAAGTCTTGCGGCTATACCCTTCAGCACCAAATGAACAAAGGCAAGCCAAAGCCGACATTCAAGTGAGCCACGACCTGTCGATTGCGAGTGGAACAAACATGTGGATTGACATCGTCGGCATGCACCACGACCCGGCCCTGTGGGACGACGACGTCAACGAGTTCAAGCCGGAGAGGTTCAAGGACAACATCCACGGGGGGTGCAAGCACGAGATGGGGTACTTGCCTTTTGGGTTTGGAGGGAGAATGTGCATTGGTAGAAACTTGACTTTCTTGGAGTACAAGATAGTTCTAACCCTAATTCTATCTAGGTTTTCATTTACCATCTCTCCAACATTCTGCCCCTTCTATTGTCCTATCTCTGAGACCTTCCGATGGCCTGCCTCTAGTACTCCAACCCCTCTAGACACCTGGGCCCTACGTTTTATTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

356

Amino Acids

40.52

Weight (kDa)

6.52

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 322	8.7e-63	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52400
fragaria_vesca	FvH4_7g29610 FvH4_7g29611 FvH4_7g29620
malus_domestica	MD01G1202600.v1.1 MD01G1202700.v1.1 MD01G1203000.v1.1 MD07G1272000.v1.1 MD07G1272300.v1.1 MD07G1272400.v1.1
prunus_persica	Prupe.2G295700_v2.0.a1 Prupe.2G295800_v2.0.a1
pyrus_communis	pycom01g21190 pycom01g21200 pycom07g24870 pycom07g24880
rosa_chinensis	RchiOBHm_Chr1g0377591 RchiOBHm_Chr1g0377601 RchiOBHm_Chr1g0377631
rosa_laevigata	RLG00000026513 RLG00000026514
rosa_multiflora	Rmu_co8133244.1_g000001 Rmu_sc0002832.1_g000010 Rmu_sc0002832.1_g000011 Rmu_sc0002832.1_g000012 Rmu_sc0012587.1_g000009 Rmu_sc0035943.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281180 Rroxscaffold_4G00281200 Rroxscaffold_4G00281210
rosa_rugosa	Rorug01G0403700 Rorug01G0403800
rosa_samantha	Rh1AG428800 Rh1AG428900 Rh1AG429000 Rh1AG429100 Rh1BG380200 Rh1BG380400 Rh1CG394400 Rh1CG394600 Rh1DG411400 Rh1DG411600
rosa_wichuraiana	Rw1G036970 Rw1G036980 Rw1G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	785
AatII	GACGTC	2 cut(s)	93, 789
Acc36I	ACCTGC	1 cut(s)	375
AciI	CCGC	3 cut(s)	114, 356, 643
AclWI	GGATC	1 cut(s)	211
AcoI	YGGCCR	2 cut(s)	163, 513
AcsI	RAATTY	1 cut(s)	83
AcuI	CTGAAG	1 cut(s)	639
AcyI	GRCGYC	2 cut(s)	90, 786
AfaI	GTAC	3 cut(s)	854, 914, 1024
AfiI	CCNNNNNNNGG	3 cut(s)	226, 766, 1008
AflIII	ACRYGT	1 cut(s)	732
AgsI	TTSAA	5 cut(s)	211, 464, 695, 799, 814
AjiI	CACGTC	1 cut(s)	586
AjnI	CCWGG	3 cut(s)	510, 522, 1043
AluBI	AGCT	3 cut(s)	15, 141, 153
AluI	AGCT	3 cut(s)	15, 141, 153
Alw26I	GTCTC	4 cut(s)	20, 467, 564, 992
AlwI	GGATC	1 cut(s)	211
AoxI	GGCC	7 cut(s)	163, 273, 353, 513, 768, 1010, 1047
ApaI	GGGCCC	1 cut(s)	1051
ApoI	RAATTY	1 cut(s)	83
AspS9I	GGNCC	4 cut(s)	353, 769, 1047, 1048
AsuC2I	CCSGG	1 cut(s)	767
AsuHPI	GGTGA	2 cut(s)	22, 634
AsuII	TTCGAA	1 cut(s)	177
BaeGI	GKGCMC	1 cut(s)	1051
BalI	TGGCCA	1 cut(s)	515
BanII	GRGCYC	1 cut(s)	1051
BauI	CACGAG	1 cut(s)	842
BccI	CCATC	5 cut(s)	607, 612, 841, 965, 1002
BceAI	ACGGC	2 cut(s)	123, 251
BciT130I	CCWGG	3 cut(s)	512, 524, 1045
BclI	TGATCA	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	767
BcoDI	GTCTC	4 cut(s)	20, 467, 564, 992
BfaI	CTAG	5 cut(s)	44, 170, 942, 1020, 1037
BfuAI	ACCTGC	1 cut(s)	375
BglI	GCCNNNNNGGC	1 cut(s)	272
BisI	GCNGC	2 cut(s)	356, 644
BlsI	GCNGC	2 cut(s)	357, 645
BmcAI	AGTACT	1 cut(s)	1024
Bme1390I	CCNGG	4 cut(s)	512, 524, 767, 1045
BmgBI	CACGTC	1 cut(s)	586
BmgT120I	GGNCC	4 cut(s)	353, 769, 1047, 1048
BmiI	GGNNCC	2 cut(s)	354, 1049
BmrFI	CCNGG	4 cut(s)	512, 524, 767, 1045
BmsI	GCATC	2 cut(s)	156, 240
BpmI	CTGGAG	1 cut(s)	138
Bpu14I	TTCGAA	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	767
BsaBI	GATNNNNATC	1 cut(s)	743
BsaHI	GRCGYC	2 cut(s)	90, 786
BsaI	GGTCTC	2 cut(s)	20, 992
BsaJI	CCNNGG	2 cut(s)	826, 1044
BsaXI	ACNNNNNCTCC	2 cut(s)	946, 976
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 766, 1008
Bse118I	RCCGGY	1 cut(s)	165
Bse3DI	GCAATG	1 cut(s)	12
Bse8I	GATNNNNATC	1 cut(s)	743
BseBI	CCWGG	3 cut(s)	512, 524, 1045
BseDI	CCNNGG	2 cut(s)	826, 1044
BseGI	GGATG	3 cut(s)	445, 623, 822
BseJI	GATNNNNATC	1 cut(s)	743
BseLI	CCNNNNNNNGG	3 cut(s)	226, 766, 1008
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	987
BseRI	GAGGAG	1 cut(s)	563
BseSI	GKGCMC	1 cut(s)	1051
BshFI	GGCC	7 cut(s)	165, 275, 355, 515, 770, 1012, 1049
BsiSI	CCGG	4 cut(s)	72, 166, 767, 803
BslFI	GGGAC	1 cut(s)	791
BslI	CCNNNNNNNGG	3 cut(s)	226, 766, 1008
BsmAI	GTCTC	4 cut(s)	20, 467, 564, 992
BsmFI	GGGAC	1 cut(s)	791
BsnI	GGCC	7 cut(s)	165, 275, 355, 515, 770, 1012, 1049
Bso31I	GGTCTC	2 cut(s)	20, 992
Bsp119I	TTCGAA	1 cut(s)	177
Bsp120I	GGGCCC	1 cut(s)	1047
Bsp1286I	GDGCHC	1 cut(s)	1051
Bsp143I	GATC	4 cut(s)	123, 216, 339, 535
BspACI	CCGC	3 cut(s)	114, 356, 643
BspANI	GGCC	7 cut(s)	165, 275, 355, 515, 770, 1012, 1049
BspCNI	CTCAG	1 cut(s)	988
BspHI	TCATGA	1 cut(s)	469
BspLI	GGNNCC	2 cut(s)	354, 1049
BspMI	ACCTGC	1 cut(s)	375
BspPI	GGATC	1 cut(s)	211
BspT104I	TTCGAA	1 cut(s)	177
BspTNI	GGTCTC	2 cut(s)	20, 992
BsrDI	GCAATG	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	165
BssAI	RCCGGY	1 cut(s)	165
BssECI	CCNNGG	2 cut(s)	826, 1044
BssMI	GATC	4 cut(s)	123, 216, 339, 535
BssNI	GRCGYC	2 cut(s)	90, 786
BssSI	CACGAG	1 cut(s)	842
Bst2BI	CACGAG	1 cut(s)	842
Bst2UI	CCWGG	3 cut(s)	512, 524, 1045
BstACI	GRCGYC	2 cut(s)	90, 786
BstBI	TTCGAA	1 cut(s)	177
BstC8I	GCNNGC	5 cut(s)	167, 678, 755, 839, 1014
BstDEI	CTNAG	3 cut(s)	185, 258, 996
BstDSI	CCRYGG	1 cut(s)	826
BstF5I	GGATG	3 cut(s)	445, 623, 822
BstKTI	GATC	4 cut(s)	126, 219, 342, 538
BstMAI	GTCTC	4 cut(s)	20, 467, 564, 992
BstMBI	GATC	4 cut(s)	123, 216, 339, 535
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	3 cut(s)	512, 524, 1045
BstNSI	RCATGY	3 cut(s)	595, 736, 757
BstSCI	CCNGG	4 cut(s)	510, 522, 765, 1043
BstSLI	GKGCMC	1 cut(s)	1051
BsuRI	GGCC	7 cut(s)	165, 275, 355, 515, 770, 1012, 1049
BtgI	CCRYGG	1 cut(s)	826
BtgZI	GCGATG	1 cut(s)	112
BtrI	CACGTC	1 cut(s)	586
BtsCI	GGATG	3 cut(s)	445, 623, 822
BveI	ACCTGC	1 cut(s)	375
Cac8I	GCNNGC	5 cut(s)	167, 678, 755, 839, 1014
CciI	TCATGA	1 cut(s)	469
Cfr10I	RCCGGY	1 cut(s)	165
Cfr13I	GGNCC	4 cut(s)	353, 769, 1047, 1048
CseI	GACGC	1 cut(s)	339
Csp6I	GTAC	3 cut(s)	853, 913, 1023
CspCI	CAANNNNNGTGG	2 cut(s)	509, 544
CviAII	CATG	6 cut(s)	398, 470, 495, 592, 733, 754
CviQI	GTAC	3 cut(s)	853, 913, 1023
DdeI	CTNAG	3 cut(s)	185, 258, 996
DpnI	GATC	4 cut(s)	125, 218, 341, 537
DpnII	GATC	4 cut(s)	123, 216, 339, 535
DrdI	GACNNNNNNGTC	1 cut(s)	785
DseDI	GACNNNNNNGTC	1 cut(s)	785
EaeI	YGGCCR	2 cut(s)	163, 513
Eco24I	GRGCYC	1 cut(s)	1051
Eco31I	GGTCTC	2 cut(s)	20, 992
Eco57I	CTGAAG	1 cut(s)	639
EcoO109I	RGGNCCY	1 cut(s)	1048
EcoRI	GAATTC	1 cut(s)	83
EcoRII	CCWGG	3 cut(s)	510, 522, 1043
EcoT38I	GRGCYC	1 cut(s)	1051
FaeI	CATG	6 cut(s)	401, 473, 498, 595, 736, 757
FaiI	YATR	7 cut(s)	399, 471, 496, 593, 649, 734, 755
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FaqI	GGGAC	1 cut(s)	791
FatI	CATG	6 cut(s)	397, 469, 494, 591, 732, 753
FbaI	TGATCA	1 cut(s)	339
Fnu4HI	GCNGC	2 cut(s)	356, 644
FokI	GGATG	3 cut(s)	452, 630, 809
FriOI	GRGCYC	1 cut(s)	1051
Fsp4HI	GCNGC	2 cut(s)	356, 644
FspBI	CTAG	5 cut(s)	44, 170, 942, 1020, 1037
GluI	GCNGC	2 cut(s)	356, 644
GsuI	CTGGAG	1 cut(s)	138
HaeIII	GGCC	7 cut(s)	165, 275, 355, 515, 770, 1012, 1049
HapII	CCGG	4 cut(s)	72, 166, 767, 803
HgaI	GACGC	1 cut(s)	339
Hin1I	GRCGYC	2 cut(s)	90, 786
Hin1II	CATG	6 cut(s)	401, 473, 498, 595, 736, 757
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	4 cut(s)	72, 166, 767, 803
HphI	GGTGA	2 cut(s)	22, 634
Hpy166II	GTNNAC	3 cut(s)	408, 589, 790
Hpy188I	TCNGA	4 cut(s)	344, 569, 997, 1007
Hpy188III	TCNNGA	6 cut(s)	80, 94, 241, 470, 600, 1037
Hpy8I	GTNNAC	3 cut(s)	408, 589, 790
Hpy99I	CGWCG	5 cut(s)	92, 95, 752, 785, 788
HpyAV	CCTTC	5 cut(s)	396, 458, 663, 988, 1012
HpyCH4IV	ACGT	4 cut(s)	90, 585, 786, 1054
HpyCH4V	TGCA	7 cut(s)	196, 253, 447, 482, 757, 837, 885
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	3 cut(s)	185, 258, 996
HpySE526I	ACGT	4 cut(s)	90, 585, 786, 1054
Hsp92I	GRCGYC	2 cut(s)	90, 786
Hsp92II	CATG	6 cut(s)	401, 473, 498, 595, 736, 757
KroI	GCCGGC	1 cut(s)	165
KroNI	GCCGGC	1 cut(s)	167
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	4 cut(s)	123, 216, 339, 535
LmnI	GCTCC	1 cut(s)	513
LweI	GCATC	2 cut(s)	156, 240
MaeI	CTAG	5 cut(s)	44, 170, 942, 1020, 1037
MaeII	ACGT	4 cut(s)	90, 585, 786, 1054
MaeIII	GTNAC	1 cut(s)	312
MalI	GATC	4 cut(s)	125, 218, 341, 537
MboI	GATC	4 cut(s)	123, 216, 339, 535
MboII	GAAGA	2 cut(s)	448, 622
MfeI	CAATTG	2 cut(s)	49, 302
MhlI	GDGCHC	1 cut(s)	1051
MlsI	TGGCCA	1 cut(s)	515
MluCI	AATT	7 cut(s)	49, 83, 294, 302, 318, 579, 933
MluNI	TGGCCA	1 cut(s)	515
MmeI	TCCRAC	3 cut(s)	547, 989, 1052
MnlI	CCTC	8 cut(s)	71, 265, 338, 541, 801, 866, 1027, 1044
Mox20I	TGGCCA	1 cut(s)	515
MroNI	GCCGGC	1 cut(s)	165
MscI	TGGCCA	1 cut(s)	515
MseI	TTAA	5 cut(s)	17, 297, 384, 419, 1066
MslI	CAYNNNNRTG	2 cut(s)	38, 695
Msp20I	TGGCCA	1 cut(s)	515
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	4 cut(s)	72, 166, 767, 803
MspR9I	CCNGG	4 cut(s)	512, 524, 767, 1045
MunI	CAATTG	2 cut(s)	49, 302
MvaI	CCWGG	3 cut(s)	512, 524, 1045
MwoI	GCNNNNNNNGC	1 cut(s)	272
NaeI	GCCGGC	1 cut(s)	167
NciI	CCSGG	1 cut(s)	767
NdeII	GATC	4 cut(s)	123, 216, 339, 535
NgoMIV	GCCGGC	1 cut(s)	165
NlaIII	CATG	6 cut(s)	401, 473, 498, 595, 736, 757
NlaIV	GGNNCC	2 cut(s)	354, 1049
NmuCI	GTSAC	1 cut(s)	312
NspI	RCATGY	3 cut(s)	595, 736, 757
NspV	TTCGAA	1 cut(s)	177
PaeI	GCATGC	1 cut(s)	757
PagI	TCATGA	1 cut(s)	469
PciI	ACATGT	1 cut(s)	732
PcsI	WCGNNNNNNNCGW	1 cut(s)	789
PdiI	GCCGGC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	68
PflFI	GACNNNGTC	2 cut(s)	746, 785
PkrI	GCNGC	2 cut(s)	357, 645
PscI	ACATGT	1 cut(s)	732
Psp6I	CCWGG	3 cut(s)	510, 522, 1043
PspGI	CCWGG	3 cut(s)	510, 522, 1043
PspN4I	GGNNCC	2 cut(s)	354, 1049
PspOMI	GGGCCC	1 cut(s)	1047
PspPI	GGNCC	4 cut(s)	353, 769, 1047, 1048
PsyI	GACNNNGTC	2 cut(s)	746, 785
RsaI	GTAC	3 cut(s)	854, 914, 1024
RsaNI	GTAC	3 cut(s)	853, 913, 1023
RseI	CAYNNNNRTG	2 cut(s)	38, 695
SaqAI	TTAA	5 cut(s)	17, 297, 384, 419, 1066
SatI	GCNGC	2 cut(s)	356, 644
Sau3AI	GATC	4 cut(s)	123, 216, 339, 535
Sau96I	GGNCC	4 cut(s)	353, 769, 1047, 1048
ScaI	AGTACT	1 cut(s)	1024
ScrFI	CCNGG	4 cut(s)	512, 524, 767, 1045
SduI	GDGCHC	1 cut(s)	1051
SfaNI	GCATC	2 cut(s)	156, 240
SfuI	TTCGAA	1 cut(s)	177
SmiMI	CAYNNNNRTG	2 cut(s)	38, 695
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
SphI	GCATGC	1 cut(s)	757
Sse9I	AATT	7 cut(s)	49, 83, 294, 302, 318, 579, 933
SsiI	CCGC	3 cut(s)	114, 356, 643
SspMI	CTAG	5 cut(s)	44, 170, 942, 1020, 1037
StyD4I	CCNGG	4 cut(s)	510, 522, 765, 1043
TaiI	ACGT	4 cut(s)	93, 588, 789, 1057
TaqI	TCGA	4 cut(s)	87, 93, 177, 713
TasI	AATT	7 cut(s)	49, 83, 294, 302, 318, 579, 933
TatI	WGTACW	2 cut(s)	912, 1022
TauI	GCSGC	2 cut(s)	358, 646
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	5 cut(s)	17, 297, 384, 419, 1066
Tru9I	TTAA	5 cut(s)	17, 297, 384, 419, 1066
TseFI	GTSAC	1 cut(s)	312
Tsp45I	GTSAC	1 cut(s)	312
TspDTI	ATGAA	3 cut(s)	644, 681, 939
TspGWI	ACGGA	2 cut(s)	209, 403
Tth111I	GACNNNGTC	2 cut(s)	746, 785
XapI	RAATTY	1 cut(s)	83
XbaI	TCTAGA	1 cut(s)	1036
XceI	RCATGY	3 cut(s)	595, 736, 757
XspI	CTAG	5 cut(s)	44, 170, 942, 1020, 1037
ZraI	GACGTC	2 cut(s)	91, 787
ZrmI	AGTACT	1 cut(s)	1024

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.