Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002024

Physical Location & Seq

Genomic Coordinates Reverse (-)

3561374 .. 3563029

Gene Structure 1656 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00281200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGAGGTCACTGCAAAGAATTGGGGGAAACCTACTGTGTTCAAACGTGATAGGGCTCCCATGGTTGGTAATGGTCTTGTCATGTCTGAAGGTGATGAATGGGCTCTTCACCGCCATGTTTTGACTCCTGCGTTTAACCCTACTAACTTGAAGGCAATGGCGAGCTTGATGGTGGAGACTACCACAATAATGCTAGACAAGTGGACTAACCAGCTCATGAATTCCAGCATTCAAGAAATTGATGTCGAGAAATCGATCACAGAAACAGCAGGGGAGATCATCGCCAAGGCCAGCTTCGGCATTAGTTACCAAAGTGACAGCCGAGTGTTTGGAAAATTCAGGGCCCTGCAAATCAGCCTCTTCCAAACAAAGCGCCTTCTGGGAGTTCCATTTGGGGAATTCTTGTACCCCAAGCGAGCCCTCGAGGCCAGAAGACTTGGAAAAGAAATTAACCAACTGTTCTCACCGATCATAGCTTCACGAAAGAATTTGATTGGGTCATTATCGTCTCCTGCGCAGCACGACCTGCTTGGATTATTATTTAACGAGAGTGATCAACAAGGCAGATTCAGAAAGGCTTTGACGACACAGCAGCTCGTGGATGAATGCAAGGCGTTTTTCTTTGCAGGGCATGAGACAACAGCATTGTCGATCACGTGGACGATGCTACTTCTGACCACGAATCCGGAGTGGCAGAATGAATTGAGGGAAGAGATTAGAGAGGTGGTGGGAGATCAAGAAATTGATGTCAATATGCTTGCTGGACTAAAGAAGATGGGATGGGTGATGAATGAGATTTTCCGATTATACCCTTCAGCACCAAATGCACAAAGACAAGCTAAAGATGACATTCAAGTCAGTAAAGACCTGACAATCCCTAGTGGAACAAAAATGTGGATTGATATTGTGGCCATGCACCATGATCCAGTTCTATGGGGTGAGGATGTGCATGAGTTTAAGCCAGAGAGGTTCAAAGATGACATACATGGTGGGTGCAAGCACAAGATGGGTTTCTTGCCTTTTGGGTTTGGAGGAAGGATGTGTATTGGTAGAAACTTGAGCTTCTTGGAGTATAAGATTGTGCTAACCCTGATTCTGTCTAGGTTTTCTTTTACTATTTCTCCTACCTTCTCCTTCTACTTTGCTCTCTATGAGGCCATCTTATGTCCTGCCTCTGGTACTCCAGCCCTTGGATCGCAGATGACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

403

Amino Acids

45.53

Weight (kDa)

7.7

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	11 - 375	7.6e-70	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52400
fragaria_vesca	FvH4_7g29610 FvH4_7g29611 FvH4_7g29620
malus_domestica	MD01G1202600.v1.1 MD01G1202700.v1.1 MD01G1203000.v1.1 MD07G1272000.v1.1 MD07G1272300.v1.1 MD07G1272400.v1.1
prunus_persica	Prupe.2G295700_v2.0.a1 Prupe.2G295800_v2.0.a1
pyrus_communis	pycom01g21190 pycom01g21200 pycom07g24870 pycom07g24880
rosa_chinensis	RchiOBHm_Chr1g0377591 RchiOBHm_Chr1g0377601 RchiOBHm_Chr1g0377631
rosa_laevigata	RLG00000026513 RLG00000026514
rosa_multiflora	Rmu_co8133244.1_g000001 Rmu_sc0002832.1_g000010 Rmu_sc0002832.1_g000011 Rmu_sc0002832.1_g000012 Rmu_sc0012587.1_g000009 Rmu_sc0035943.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281180 Rroxscaffold_4G00281200 Rroxscaffold_4G00281210
rosa_rugosa	Rorug01G0403700 Rorug01G0403800
rosa_samantha	Rh1AG428800 Rh1AG428900 Rh1AG429000 Rh1AG429100 Rh1BG380200 Rh1BG380400 Rh1CG394400 Rh1CG394600 Rh1DG411400 Rh1DG411600
rosa_wichuraiana	Rw1G036970 Rw1G036980 Rw1G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	854
AbsI	CCTCGAGG	1 cut(s)	422
Acc16I	TGCGCA	1 cut(s)	516
Acc36I	ACCTGC	1 cut(s)	534
AccB7I	CCANNNNNTGG	1 cut(s)	1190
AccIII	TCCGGA	1 cut(s)	685
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	2 cut(s)	917, 1201
AcoI	YGGCCR	1 cut(s)	909
AcsI	RAATTY	4 cut(s)	220, 335, 398, 487
AcuI	CTGAAG	2 cut(s)	108, 798
AcvI	CACGTG	1 cut(s)	657
AfaI	GTAC	2 cut(s)	407, 1180
AfiI	CCNNNNNNNGG	3 cut(s)	65, 1175, 1190
AgsI	TTSAA	5 cut(s)	43, 151, 233, 854, 973
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	7 cut(s)	165, 214, 294, 476, 595, 839, 1062
AluI	AGCT	7 cut(s)	165, 214, 294, 476, 595, 839, 1062
Alw26I	GTCTC	3 cut(s)	170, 513, 629
AlwI	GGATC	2 cut(s)	917, 1201
Ama87I	CYCGRG	1 cut(s)	422
Aor13HI	TCCGGA	1 cut(s)	685
AoxI	GGCC	5 cut(s)	288, 342, 426, 909, 1155
ApaI	GGGCCC	1 cut(s)	346
ApeKI	GCWGC	2 cut(s)	517, 592
ApoI	RAATTY	4 cut(s)	220, 335, 398, 487
AspLEI	GCGC	2 cut(s)	375, 517
AspS9I	GGNCC	2 cut(s)	342, 343
AsuHPI	GGTGA	5 cut(s)	101, 104, 456, 796, 950
AvaI	CYCGRG	1 cut(s)	422
BaeGI	GKGCMC	1 cut(s)	346
BalI	TGGCCA	1 cut(s)	911
BanII	GRGCYC	4 cut(s)	58, 106, 346, 421
BauI	CACGAG	1 cut(s)	596
BbrPI	CACGTG	1 cut(s)	657
BbsI	GAAGAC	1 cut(s)	439
BbvI	GCAGC	2 cut(s)	529, 604
BccI	CCATC	5 cut(s)	163, 769, 774, 1000, 1166
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	3 cut(s)	170, 513, 629
BfaI	CTAG	3 cut(s)	194, 879, 1101
BfoI	RGCGCY	1 cut(s)	376
BfuAI	ACCTGC	1 cut(s)	534
BglI	GCCNNNNNGGC	1 cut(s)	425
BisI	GCNGC	2 cut(s)	518, 593
BlsI	GCNGC	2 cut(s)	519, 594
BmeT110I	CYCGRG	1 cut(s)	422
BmgT120I	GGNCC	2 cut(s)	342, 343
BmiI	GGNNCC	2 cut(s)	57, 344
BmsI	GCATC	1 cut(s)	654
BpiI	GAAGAC	1 cut(s)	439
BpmI	CTGGAG	1 cut(s)	1167
BpuEI	CTTGAG	1 cut(s)	1078
Bsa29I	ATCGAT	1 cut(s)	254
BsaAI	YACGTR	1 cut(s)	657
BsaJI	CCNNGG	3 cut(s)	60, 285, 1189
BsaWI	WCCGGW	1 cut(s)	685
BsaXI	ACNNNNNCTCC	2 cut(s)	1105, 1135
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 1175, 1190
Bse1I	ACTGG	1 cut(s)	926
Bse3DI	GCAATG	1 cut(s)	162
BseAI	TCCGGA	1 cut(s)	685
BseCI	ATCGAT	1 cut(s)	254
BseDI	CCNNGG	3 cut(s)	60, 285, 1189
BseGI	GGATG	4 cut(s)	607, 785, 949, 1044
BseLI	CCNNNNNNNGG	3 cut(s)	65, 1175, 1190
BseMI	GCAATG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	926
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	2 cut(s)	529, 604
BshFI	GGCC	5 cut(s)	290, 344, 428, 911, 1157
BshVI	ATCGAT	1 cut(s)	254
BsiHKCI	CYCGRG	1 cut(s)	422
BsiSI	CCGG	1 cut(s)	686
BslI	CCNNNNNNNGG	3 cut(s)	65, 1175, 1190
BsmAI	GTCTC	3 cut(s)	170, 513, 629
BsmBI	CGTCTC	1 cut(s)	513
BsmI	GAATGC	2 cut(s)	228, 611
BsnI	GGCC	5 cut(s)	290, 344, 428, 911, 1157
BsoBI	CYCGRG	1 cut(s)	422
Bsp120I	GGGCCC	1 cut(s)	342
Bsp1286I	GDGCHC	4 cut(s)	58, 106, 346, 421
Bsp13I	TCCGGA	1 cut(s)	685
Bsp143I	GATC	8 cut(s)	255, 276, 468, 553, 651, 733, 922, 1193
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	5 cut(s)	290, 344, 428, 911, 1157
BspDI	ATCGAT	1 cut(s)	254
BspEI	TCCGGA	1 cut(s)	685
BspHI	TCATGA	1 cut(s)	216
BspLI	GGNNCC	2 cut(s)	57, 344
BspMI	ACCTGC	1 cut(s)	534
BspPI	GGATC	2 cut(s)	917, 1201
BspQI	GCTCTTC	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	926
BssECI	CCNNGG	3 cut(s)	60, 285, 1189
BssMI	GATC	8 cut(s)	255, 276, 468, 553, 651, 733, 922, 1193
BssSI	CACGAG	1 cut(s)	596
BssT1I	CCWWGG	3 cut(s)	60, 285, 1189
Bst2BI	CACGAG	1 cut(s)	596
Bst4CI	ACNGT	2 cut(s)	37, 459
Bst6I	CTCTTC	3 cut(s)	111, 365, 705
BstAPI	GCANNNNNTGC	2 cut(s)	526, 824
BstBAI	YACGTR	1 cut(s)	657
BstC8I	GCNNGC	5 cut(s)	163, 292, 417, 759, 998
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	4 cut(s)	607, 785, 949, 1044
BstH2I	RGCGCY	1 cut(s)	376
BstHHI	GCGC	2 cut(s)	375, 517
BstKTI	GATC	8 cut(s)	258, 279, 471, 556, 654, 736, 925, 1196
BstMAI	GTCTC	3 cut(s)	170, 513, 629
BstMBI	GATC	8 cut(s)	255, 276, 468, 553, 651, 733, 922, 1193
BstMWI	GCNNNNNNNGC	3 cut(s)	425, 526, 824
BstSLI	GKGCMC	1 cut(s)	346
BstV1I	GCAGC	2 cut(s)	529, 604
BstV2I	GAAGAC	1 cut(s)	439
BstXI	CCANNNNNNTGG	1 cut(s)	933
Bsu15I	ATCGAT	1 cut(s)	254
BsuRI	GGCC	5 cut(s)	290, 344, 428, 911, 1157
BsuTUI	ATCGAT	1 cut(s)	254
BtgI	CCRYGG	1 cut(s)	60
BtgZI	GCGATG	1 cut(s)	265
BtsCI	GGATG	4 cut(s)	607, 785, 949, 1044
BtsI	GCAGTG	1 cut(s)	9
BtsIMutI	CAGTG	1 cut(s)	9
BveI	ACCTGC	1 cut(s)	534
Cac8I	GCNNGC	5 cut(s)	163, 292, 417, 759, 998
CciI	TCATGA	1 cut(s)	216
CfoI	GCGC	2 cut(s)	375, 517
Cfr13I	GGNCC	2 cut(s)	342, 343
ClaI	ATCGAT	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	406, 1179
CviAII	CATG	9 cut(s)	61, 82, 116, 217, 632, 913, 920, 950, 986
CviQI	GTAC	2 cut(s)	406, 1179
DpnI	GATC	8 cut(s)	257, 278, 470, 555, 653, 735, 924, 1195
DpnII	GATC	8 cut(s)	255, 276, 468, 553, 651, 733, 922, 1193
DrdI	GACNNNNNNGTC	1 cut(s)	854
DseDI	GACNNNNNNGTC	1 cut(s)	854
EaeI	YGGCCR	1 cut(s)	909
Eam1104I	CTCTTC	3 cut(s)	111, 365, 705
EarI	CTCTTC	3 cut(s)	111, 365, 705
Eco130I	CCWWGG	3 cut(s)	60, 285, 1189
Eco24I	GRGCYC	4 cut(s)	58, 106, 346, 421
Eco57I	CTGAAG	2 cut(s)	108, 798
Eco72I	CACGTG	1 cut(s)	657
Eco88I	CYCGRG	1 cut(s)	422
EcoO109I	RGGNCCY	2 cut(s)	342, 343
EcoRI	GAATTC	2 cut(s)	220, 398
EcoT14I	CCWWGG	3 cut(s)	60, 285, 1189
EcoT38I	GRGCYC	4 cut(s)	58, 106, 346, 421
ErhI	CCWWGG	3 cut(s)	60, 285, 1189
Esp3I	CGTCTC	1 cut(s)	513
FaeI	CATG	9 cut(s)	64, 85, 119, 220, 635, 916, 923, 953, 989
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FatI	CATG	9 cut(s)	60, 81, 115, 216, 631, 912, 919, 949, 985
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	2 cut(s)	518, 593
FokI	GGATG	4 cut(s)	614, 792, 956, 1051
FriOI	GRGCYC	4 cut(s)	58, 106, 346, 421
Fsp4HI	GCNGC	2 cut(s)	518, 593
FspBI	CTAG	3 cut(s)	194, 879, 1101
FspI	TGCGCA	1 cut(s)	516
GlaI	GCGC	2 cut(s)	374, 516
GluI	GCNGC	2 cut(s)	518, 593
GsuI	CTGGAG	1 cut(s)	1167
HaeII	RGCGCY	1 cut(s)	376
HaeIII	GGCC	5 cut(s)	290, 344, 428, 911, 1157
HapII	CCGG	1 cut(s)	686
HhaI	GCGC	2 cut(s)	375, 517
Hin1II	CATG	9 cut(s)	64, 85, 119, 220, 635, 916, 923, 953, 989
Hin6I	GCGC	2 cut(s)	373, 515
HinP1I	GCGC	2 cut(s)	373, 515
HinfI	GANTC	4 cut(s)	124, 567, 682, 1093
HpaII	CCGG	1 cut(s)	686
HphI	GGTGA	5 cut(s)	101, 104, 456, 796, 950
Hpy166II	GTNNAC	2 cut(s)	204, 660
Hpy188I	TCNGA	4 cut(s)	88, 572, 675, 803
Hpy188III	TCNNGA	6 cut(s)	217, 233, 247, 480, 686, 737
Hpy8I	GTNNAC	2 cut(s)	204, 660
HpyAV	CCTTC	7 cut(s)	83, 145, 386, 822, 1029, 1138, 1144
HpyCH4III	ACNGT	2 cut(s)	37, 459
HpyCH4IV	ACGT	2 cut(s)	46, 656
HpyCH4V	TGCA	8 cut(s)	14, 349, 609, 626, 827, 916, 949, 996
HpyF10VI	GCNNNNNNNGC	3 cut(s)	425, 526, 824
HpySE526I	ACGT	2 cut(s)	46, 656
Hsp92II	CATG	9 cut(s)	64, 85, 119, 220, 635, 916, 923, 953, 989
HspAI	GCGC	2 cut(s)	373, 515
Kpn2I	TCCGGA	1 cut(s)	685
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	8 cut(s)	255, 276, 468, 553, 651, 733, 922, 1193
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	61
Lsp1109I	GCAGC	2 cut(s)	529, 604
LweI	GCATC	1 cut(s)	654
MaeI	CTAG	3 cut(s)	194, 879, 1101
MaeII	ACGT	2 cut(s)	46, 656
MaeIII	GTNAC	3 cut(s)	7, 305, 314
MalI	GATC	8 cut(s)	257, 278, 470, 555, 653, 735, 924, 1195
MboI	GATC	8 cut(s)	255, 276, 468, 553, 651, 733, 922, 1193
MboII	GAAGA	5 cut(s)	98, 352, 444, 722, 784
MhlI	GDGCHC	4 cut(s)	58, 106, 346, 421
MlsI	TGGCCA	1 cut(s)	911
MluCI	AATT	9 cut(s)	19, 220, 237, 335, 398, 447, 487, 701, 741
MluNI	TGGCCA	1 cut(s)	911
MlyI	GAGTC	1 cut(s)	118
Mox20I	TGGCCA	1 cut(s)	911
MroI	TCCGGA	1 cut(s)	685
MscI	TGGCCA	1 cut(s)	911
MseI	TTAA	4 cut(s)	135, 450, 543, 957
MslI	CAYNNNNRTG	2 cut(s)	114, 188
Msp20I	TGGCCA	1 cut(s)	911
MspI	CCGG	1 cut(s)	686
Mva1269I	GAATGC	2 cut(s)	228, 611
MwoI	GCNNNNNNNGC	3 cut(s)	425, 526, 824
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	8 cut(s)	255, 276, 468, 553, 651, 733, 922, 1193
NlaIII	CATG	9 cut(s)	64, 85, 119, 220, 635, 916, 923, 953, 989
NlaIV	GGNNCC	2 cut(s)	57, 344
NmeAIII	GCCGAG	1 cut(s)	347
NmuCI	GTSAC	2 cut(s)	7, 314
NsbI	TGCGCA	1 cut(s)	516
PaeR7I	CTCGAG	1 cut(s)	422
PagI	TCATGA	1 cut(s)	216
PciSI	GCTCTTC	1 cut(s)	111
PctI	GAATGC	2 cut(s)	228, 611
PfeI	GAWTC	3 cut(s)	567, 682, 1093
PflMI	CCANNNNNTGG	1 cut(s)	1190
PkrI	GCNGC	2 cut(s)	519, 594
PleI	GAGTC	1 cut(s)	118
PmaCI	CACGTG	1 cut(s)	657
PmlI	CACGTG	1 cut(s)	657
PpsI	GAGTC	1 cut(s)	118
Ppu21I	YACGTR	1 cut(s)	657
PspCI	CACGTG	1 cut(s)	657
PspN4I	GGNNCC	2 cut(s)	57, 344
PspOMI	GGGCCC	1 cut(s)	342
PspPI	GGNCC	2 cut(s)	342, 343
PspXI	VCTCGAGB	1 cut(s)	422
RsaI	GTAC	2 cut(s)	407, 1180
RsaNI	GTAC	2 cut(s)	406, 1179
RseI	CAYNNNNRTG	2 cut(s)	114, 188
SapI	GCTCTTC	1 cut(s)	111
SaqAI	TTAA	4 cut(s)	135, 450, 543, 957
SatI	GCNGC	2 cut(s)	518, 593
Sau3AI	GATC	8 cut(s)	255, 276, 468, 553, 651, 733, 922, 1193
Sau96I	GGNCC	2 cut(s)	342, 343
SchI	GAGTC	1 cut(s)	118
SduI	GDGCHC	4 cut(s)	58, 106, 346, 421
SfaNI	GCATC	1 cut(s)	654
Sfr274I	CTCGAG	1 cut(s)	422
SlaI	CTCGAG	1 cut(s)	422
SmiMI	CAYNNNNRTG	2 cut(s)	114, 188
SmlI	CTYRAG	2 cut(s)	422, 1057
SmoI	CTYRAG	2 cut(s)	422, 1057
Sse9I	AATT	9 cut(s)	19, 220, 237, 335, 398, 447, 487, 701, 741
SsiI	CCGC	1 cut(s)	112
SspMI	CTAG	3 cut(s)	194, 879, 1101
StyI	CCWWGG	3 cut(s)	60, 285, 1189
TaaI	ACNGT	2 cut(s)	37, 459
TaiI	ACGT	2 cut(s)	49, 659
TaqI	TCGA	4 cut(s)	246, 254, 423, 650
TasI	AATT	9 cut(s)	19, 220, 237, 335, 398, 447, 487, 701, 741
TfiI	GAWTC	3 cut(s)	567, 682, 1093
Tru1I	TTAA	4 cut(s)	135, 450, 543, 957
Tru9I	TTAA	4 cut(s)	135, 450, 543, 957
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	2 cut(s)	7, 314
TseI	GCWGC	2 cut(s)	517, 592
Tsp45I	GTSAC	2 cut(s)	7, 314
TspDTI	ATGAA	5 cut(s)	111, 233, 618, 714, 803
TspRI	CASTG	1 cut(s)	16
Van91I	CCANNNNNTGG	1 cut(s)	1190
XapI	RAATTY	4 cut(s)	220, 335, 398, 487
XhoI	CTCGAG	1 cut(s)	422
XspI	CTAG	3 cut(s)	194, 879, 1101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.