Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002024

Physical Location & Seq

Genomic Coordinates Forward (+)

33867126 .. 33867659

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1272300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGTGCTGCTGAAGCTCAAGAAAAATGGGTTAGATGGTCCATCTCCAAGTTTTCCCTTCGGAAATATCAGTGAGAGGAAAAAGGAGAACATCAATCTTAAAAGCTCAAGTATCTCCCATGACATACACTCGACTCTCTTTCCCTTTTTTGCTCGCTGGCATAACTCTTTCGGGAAGATGTTCGTTTATTGGTTGGGGACGGAGCCATTTTTGTACATGGCAGATCCAGGGCTACTGAAAAAACTGTCTACGGAGGTGACAGCAAAGAACTGGGGGAAGCCTGCGGTGTTCCGACGCGATAGAGCGGCGATGTTCGGTAATGGCCTAATTCATGTCCGAAGGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

116

Amino Acids

13.2

Weight (kDa)

10.48

Isoelectric Point (pI)

62.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52400
fragaria_vesca	FvH4_7g29610 FvH4_7g29611 FvH4_7g29620
malus_domestica	MD01G1202600.v1.1 MD01G1202700.v1.1 MD01G1203000.v1.1 MD07G1272000.v1.1 MD07G1272300.v1.1 MD07G1272400.v1.1
prunus_persica	Prupe.2G295700_v2.0.a1 Prupe.2G295800_v2.0.a1
pyrus_communis	pycom01g21190 pycom01g21200 pycom07g24870 pycom07g24880
rosa_chinensis	RchiOBHm_Chr1g0377591 RchiOBHm_Chr1g0377601 RchiOBHm_Chr1g0377631
rosa_laevigata	RLG00000026513 RLG00000026514
rosa_multiflora	Rmu_co8133244.1_g000001 Rmu_sc0002832.1_g000010 Rmu_sc0002832.1_g000011 Rmu_sc0002832.1_g000012 Rmu_sc0012587.1_g000009 Rmu_sc0035943.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281180 Rroxscaffold_4G00281200 Rroxscaffold_4G00281210
rosa_rugosa	Rorug01G0403700 Rorug01G0403800
rosa_samantha	Rh1AG428800 Rh1AG428900 Rh1AG429000 Rh1AG429100 Rh1BG380200 Rh1BG380400 Rh1CG394400 Rh1CG394600 Rh1DG411400 Rh1DG411600
rosa_wichuraiana	Rw1G036970 Rw1G036980 Rw1G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	305
AccI	GTMKAC	1 cut(s)	248
AccII	CGCG	1 cut(s)	297
AciI	CCGC	2 cut(s)	284, 305
AclWI	GGATC	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	32
AfaI	GTAC	1 cut(s)	215
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	2 cut(s)	16, 105
AluI	AGCT	2 cut(s)	16, 105
AlwI	GGATC	1 cut(s)	218
AoxI	GGCC	1 cut(s)	322
ApeKI	GCWGC	1 cut(s)	7
Asp700I	GAANNNNTTC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	38
BccI	CCATC	2 cut(s)	29, 49
BciT130I	CCWGG	1 cut(s)	228
BisI	GCNGC	2 cut(s)	8, 306
BlsI	GCNGC	2 cut(s)	9, 307
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	228
BmrI	ACTGGG	1 cut(s)	280
BmuI	ACTGGG	1 cut(s)	280
BpuEI	CTTGAG	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	227
BseNI	ACTGG	1 cut(s)	275
Bsh1236I	CGCG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	324
BslFI	GGGAC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	324
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	2 cut(s)	284, 305
BspANI	GGCC	1 cut(s)	324
BspFNI	CGCG	1 cut(s)	297
BspLI	GGNNCC	1 cut(s)	204
BspPI	GGATC	1 cut(s)	218
BsrBI	CCGCTC	1 cut(s)	305
BsrGI	TGTACA	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	1 cut(s)	223
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	246
BstAUI	TGTACA	1 cut(s)	213
BstC8I	GCNNGC	3 cut(s)	154, 158, 282
BstFNI	CGCG	1 cut(s)	297
BstKTI	GATC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstNI	CCWGG	1 cut(s)	228
BstSCI	CCNGG	1 cut(s)	226
BstUI	CGCG	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	324
BtgZI	GCGATG	1 cut(s)	323
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	3 cut(s)	154, 158, 282
Cfr13I	GGNCC	1 cut(s)	38
CseI	GACGC	1 cut(s)	303
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	3 cut(s)	119, 217, 332
CviJI	RGCY	6 cut(s)	16, 105, 205, 232, 280, 324
CviKI_1	RGCY	6 cut(s)	16, 105, 205, 232, 280, 324
CviQI	GTAC	1 cut(s)	214
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	38
Eco57I	CTGAAG	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	226
FaeI	CATG	3 cut(s)	122, 220, 335
FaiI	YATR	5 cut(s)	120, 125, 162, 218, 333
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	3 cut(s)	118, 216, 331
FblI	GTMKAC	1 cut(s)	248
Fnu4HI	GCNGC	2 cut(s)	8, 306
Fsp4HI	GCNGC	2 cut(s)	8, 306
GluI	GCNGC	2 cut(s)	8, 306
HaeIII	GGCC	1 cut(s)	324
HgaI	GACGC	1 cut(s)	303
Hin1II	CATG	3 cut(s)	122, 220, 335
HinfI	GANTC	1 cut(s)	133
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	3 cut(s)	62, 293, 338
Hpy188III	TCNNGA	2 cut(s)	19, 172
Hpy8I	GTNNAC	1 cut(s)	249
Hpy99I	CGWCG	1 cut(s)	297
HpyAV	CCTTC	2 cut(s)	67, 333
HpyCH4III	ACNGT	1 cut(s)	246
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
Hsp92II	CATG	3 cut(s)	122, 220, 335
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	1 cut(s)	202
LpnPI	CCDG	5 cut(s)	142, 213, 240, 256, 294
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	1 cut(s)	225
MbiI	CCGCTC	1 cut(s)	305
MboI	GATC	1 cut(s)	223
MboII	GAAGA	1 cut(s)	187
MflI	RGATCY	1 cut(s)	223
MluCI	AATT	1 cut(s)	327
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	2 cut(s)	69, 247
MroXI	GAANNNNTTC	1 cut(s)	179
MseI	TTAA	1 cut(s)	99
MspR9I	CCNGG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	228
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	1 cut(s)	13
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	3 cut(s)	122, 220, 335
NlaIV	GGNNCC	1 cut(s)	204
NmuCI	GTSAC	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	9, 307
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	2 cut(s)	8, 306
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	228
SetI	ASST	3 cut(s)	18, 107, 258
SinI	GGWCC	1 cut(s)	38
SmlI	CTYRAG	2 cut(s)	17, 106
SmoI	CTYRAG	2 cut(s)	17, 106
Sse9I	AATT	1 cut(s)	327
SsiI	CCGC	2 cut(s)	284, 305
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	131
TasI	AATT	1 cut(s)	327
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	1 cut(s)	308
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	1 cut(s)	320
TspGWI	ACGGA	2 cut(s)	215, 266
TspRI	CASTG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	38
XmiI	GTMKAC	1 cut(s)	248
XmnI	GAANNNNTTC	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.