Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002024

Physical Location & Seq

Genomic Coordinates Forward (+)

19356748 .. 19357817

Gene Structure 1070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g21200.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGATTGATTTGTGTTTGTGTATATTTACAGGAAAGACGTTCGTTTGTTGGTTGGGGACTGAGCCATTTTTGTACATAAACTGGGGGAAGCCAGGGGTGTTCCGATGCGATAGAGCCCCGATGTTCGGTAATGGCCTAGTCATGTCCGAAGGGGAAGACTGGGTTCGTCACCGCCATGTTATCACTCCTGCTTTTAACCCAACAAACTTGAAGACAATTGGAAAGATTCCGGTGCTTAAGAAATCGATGTCGAGAGAGAAATCACGGCTACCGCAGGGAGACCTCATCGCCAAGACCAGCTTTGGCATCAGCTACCAAAGTGGCCGCCTAGTGTTCGAAAAACTAAGAACCTTGCAAATGACACTCTTCAAAACGAGCCCTCTTGTGGGAGTTCCTTTCCGAAAAATGATGCTCCCTAAGGAAACCCTAGAGGCCAGAAAACTTGGGCAAGAAATCAACCAATTGTTCTTGTCAATCATTGACGAAAGGCGAAAATCCATCAAAGGGTCGACGCCGCAGCGTGACCTGCTTGGCTTGTTGCTTAAGGAGAGTGAACAAGGCCTCACAACACAAGAACTTGTGGATGAGTGCAAGACATTTTTCCTTGGAGGTCTTGAGACAAGGGCATTGGCAATCACATGGACAATGTTGCTTCTGGCCACCCACCAGGATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

226

Amino Acids

25.54

Weight (kDa)

9.39

Isoelectric Point (pI)

38.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52400
fragaria_vesca	FvH4_7g29610 FvH4_7g29611 FvH4_7g29620
malus_domestica	MD01G1202600.v1.1 MD01G1202700.v1.1 MD01G1203000.v1.1 MD07G1272000.v1.1 MD07G1272300.v1.1 MD07G1272400.v1.1
prunus_persica	Prupe.2G295700_v2.0.a1 Prupe.2G295800_v2.0.a1
pyrus_communis	pycom01g21190 pycom01g21200 pycom07g24870 pycom07g24880
rosa_chinensis	RchiOBHm_Chr1g0377591 RchiOBHm_Chr1g0377601 RchiOBHm_Chr1g0377631
rosa_laevigata	RLG00000026513 RLG00000026514
rosa_multiflora	Rmu_co8133244.1_g000001 Rmu_sc0002832.1_g000010 Rmu_sc0002832.1_g000011 Rmu_sc0002832.1_g000012 Rmu_sc0012587.1_g000009 Rmu_sc0035943.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281180 Rroxscaffold_4G00281200 Rroxscaffold_4G00281210
rosa_rugosa	Rorug01G0403700 Rorug01G0403800
rosa_samantha	Rh1AG428800 Rh1AG428900 Rh1AG429000 Rh1AG429100 Rh1BG380200 Rh1BG380400 Rh1CG394400 Rh1CG394600 Rh1DG411400 Rh1DG411600
rosa_wichuraiana	Rw1G036970 Rw1G036980 Rw1G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	534
AccI	GTMKAC	1 cut(s)	509
AciI	CCGC	4 cut(s)	172, 272, 325, 515
AcoI	YGGCCR	2 cut(s)	322, 657
AcyI	GRCGYC	1 cut(s)	512
AfaI	GTAC	1 cut(s)	74
AfiI	CCNNNNNNNGG	4 cut(s)	125, 385, 386, 504
AflII	CTTAAG	2 cut(s)	236, 542
AgsI	TTSAA	2 cut(s)	211, 370
AjnI	CCWGG	2 cut(s)	91, 666
AluBI	AGCT	2 cut(s)	300, 312
AluI	AGCT	2 cut(s)	300, 312
Alw26I	GTCTC	2 cut(s)	273, 611
AoxI	GGCC	5 cut(s)	133, 322, 432, 559, 657
ApeKI	GCWGC	1 cut(s)	517
AsuHPI	GGTGA	1 cut(s)	161
AsuII	TTCGAA	1 cut(s)	336
AxyI	CCTNAGG	1 cut(s)	417
BalI	TGGCCA	1 cut(s)	659
BanII	GRGCYC	2 cut(s)	118, 380
BbsI	GAAGAC	2 cut(s)	162, 218
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	1 cut(s)	506
BceAI	ACGGC	1 cut(s)	281
BciT130I	CCWGG	2 cut(s)	93, 668
BcoDI	GTCTC	2 cut(s)	273, 611
BfaI	CTAG	3 cut(s)	137, 329, 428
BfrI	CTTAAG	2 cut(s)	236, 542
BfuAI	ACCTGC	1 cut(s)	534
BisI	GCNGC	3 cut(s)	325, 515, 518
BlsI	GCNGC	3 cut(s)	326, 516, 519
Bme1390I	CCNGG	2 cut(s)	93, 668
BmrFI	CCNGG	2 cut(s)	93, 668
BmrI	ACTGGG	2 cut(s)	91, 169
BmsI	GCATC	3 cut(s)	95, 315, 399
BmuI	ACTGGG	2 cut(s)	91, 169
BpiI	GAAGAC	2 cut(s)	162, 218
Bpu14I	TTCGAA	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	635
Bsa29I	ATCGAT	1 cut(s)	245
BsaHI	GRCGYC	1 cut(s)	512
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	92, 604
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	4 cut(s)	125, 385, 386, 504
Bse1I	ACTGG	2 cut(s)	86, 164
Bse21I	CCTNAGG	1 cut(s)	417
BseBI	CCWGG	2 cut(s)	93, 668
BseCI	ATCGAT	1 cut(s)	245
BseDI	CCNNGG	2 cut(s)	92, 604
BseGI	GGATG	1 cut(s)	589
BseLI	CCNNNNNNNGG	4 cut(s)	125, 385, 386, 504
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	2 cut(s)	86, 164
BseXI	GCAGC	1 cut(s)	529
BshFI	GGCC	5 cut(s)	135, 324, 434, 561, 659
BshVI	ATCGAT	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	4 cut(s)	125, 385, 386, 504
BsmAI	GTCTC	2 cut(s)	273, 611
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	5 cut(s)	135, 324, 434, 561, 659
Bso31I	GGTCTC	1 cut(s)	273
Bsp119I	TTCGAA	1 cut(s)	336
Bsp1286I	GDGCHC	2 cut(s)	118, 380
Bsp1407I	TGTACA	1 cut(s)	72
BspACI	CCGC	4 cut(s)	172, 272, 325, 515
BspANI	GGCC	5 cut(s)	135, 324, 434, 561, 659
BspCNI	CTCAG	1 cut(s)	52
BspDI	ATCGAT	1 cut(s)	245
BspMI	ACCTGC	1 cut(s)	534
BspT104I	TTCGAA	1 cut(s)	336
BspTI	CTTAAG	2 cut(s)	236, 542
BspTNI	GGTCTC	1 cut(s)	273
BsrGI	TGTACA	1 cut(s)	72
BsrI	ACTGG	2 cut(s)	86, 164
BssECI	CCNNGG	2 cut(s)	92, 604
BssNI	GRCGYC	1 cut(s)	512
BssT1I	CCWWGG	1 cut(s)	604
Bst2UI	CCWGG	2 cut(s)	93, 668
Bst6I	CTCTTC	1 cut(s)	371
BstACI	GRCGYC	1 cut(s)	512
BstAFI	CTTAAG	2 cut(s)	236, 542
BstAUI	TGTACA	1 cut(s)	72
BstBI	TTCGAA	1 cut(s)	336
BstDEI	CTNAG	3 cut(s)	60, 344, 417
BstF5I	GGATG	1 cut(s)	589
BstMAI	GTCTC	2 cut(s)	273, 611
BstMWI	GCNNNNNNNGC	1 cut(s)	526
BstNI	CCWGG	2 cut(s)	93, 668
BstSCI	CCNGG	2 cut(s)	91, 666
BstV1I	GCAGC	1 cut(s)	529
BstV2I	GAAGAC	2 cut(s)	162, 218
Bsu15I	ATCGAT	1 cut(s)	245
Bsu36I	CCTNAGG	1 cut(s)	417
BsuRI	GGCC	5 cut(s)	135, 324, 434, 561, 659
BsuTUI	ATCGAT	1 cut(s)	245
BtgZI	GCGATG	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	589
BveI	ACCTGC	1 cut(s)	534
ClaI	ATCGAT	1 cut(s)	245
CseI	GACGC	1 cut(s)	520
Csp6I	GTAC	1 cut(s)	73
CspCI	CAANNNNNGTGG	1 cut(s)	653
CviAII	CATG	3 cut(s)	142, 176, 639
CviQI	GTAC	1 cut(s)	73
DdeI	CTNAG	3 cut(s)	60, 344, 417
EaeI	YGGCCR	2 cut(s)	322, 657
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	604
Eco147I	AGGCCT	1 cut(s)	561
Eco24I	GRGCYC	2 cut(s)	118, 380
Eco31I	GGTCTC	1 cut(s)	273
Eco81I	CCTNAGG	1 cut(s)	417
EcoRII	CCWGG	2 cut(s)	91, 666
EcoT14I	CCWWGG	1 cut(s)	604
EcoT38I	GRGCYC	2 cut(s)	118, 380
ErhI	CCWWGG	1 cut(s)	604
FaeI	CATG	3 cut(s)	145, 179, 642
FaiI	YATR	5 cut(s)	23, 77, 143, 177, 640
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	3 cut(s)	141, 175, 638
FblI	GTMKAC	1 cut(s)	509
Fnu4HI	GCNGC	3 cut(s)	325, 515, 518
FokI	GGATG	1 cut(s)	596
FriOI	GRGCYC	2 cut(s)	118, 380
Fsp4HI	GCNGC	3 cut(s)	325, 515, 518
FspBI	CTAG	3 cut(s)	137, 329, 428
GluI	GCNGC	3 cut(s)	325, 515, 518
HaeIII	GGCC	5 cut(s)	135, 324, 434, 561, 659
HapII	CCGG	1 cut(s)	230
HgaI	GACGC	1 cut(s)	520
Hin1I	GRCGYC	1 cut(s)	512
Hin1II	CATG	3 cut(s)	145, 179, 642
HincII	GTYRAC	1 cut(s)	510
HindII	GTYRAC	1 cut(s)	510
HinfI	GANTC	1 cut(s)	226
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	2 cut(s)	510, 554
Hpy188I	TCNGA	3 cut(s)	104, 148, 401
Hpy188III	TCNNGA	2 cut(s)	252, 614
Hpy8I	GTNNAC	2 cut(s)	510, 554
Hpy99I	CGWCG	1 cut(s)	514
HpyAV	CCTTC	1 cut(s)	143
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	2 cut(s)	355, 591
HpyF10VI	GCNNNNNNNGC	1 cut(s)	526
HpyF3I	CTNAG	3 cut(s)	60, 344, 417
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	512
Hsp92II	CATG	3 cut(s)	145, 179, 642
LmnI	GCTCC	1 cut(s)	417
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	3 cut(s)	95, 315, 399
MaeI	CTAG	3 cut(s)	137, 329, 428
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	2 cut(s)	167, 521
MboII	GAAGA	3 cut(s)	167, 223, 358
MfeI	CAATTG	2 cut(s)	216, 461
MhlI	GDGCHC	2 cut(s)	118, 380
MlsI	TGGCCA	1 cut(s)	659
MluCI	AATT	2 cut(s)	216, 461
MluNI	TGGCCA	1 cut(s)	659
MnlI	CCTC	5 cut(s)	293, 390, 424, 572, 602
Mox20I	TGGCCA	1 cut(s)	659
MscI	TGGCCA	1 cut(s)	659
MseI	TTAA	3 cut(s)	195, 237, 543
MslI	CAYNNNNRTG	1 cut(s)	174
Msp20I	TGGCCA	1 cut(s)	659
MspCI	CTTAAG	2 cut(s)	236, 542
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	2 cut(s)	93, 668
MunI	CAATTG	2 cut(s)	216, 461
MvaI	CCWGG	2 cut(s)	93, 668
MwoI	GCNNNNNNNGC	1 cut(s)	526
NlaIII	CATG	3 cut(s)	145, 179, 642
NmuCI	GTSAC	2 cut(s)	167, 521
NspV	TTCGAA	1 cut(s)	336
PceI	AGGCCT	1 cut(s)	561
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	3 cut(s)	326, 516, 519
Psp6I	CCWGG	2 cut(s)	91, 666
PspGI	CCWGG	2 cut(s)	91, 666
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	174
SalI	GTCGAC	1 cut(s)	508
SaqAI	TTAA	3 cut(s)	195, 237, 543
SatI	GCNGC	3 cut(s)	325, 515, 518
ScrFI	CCNGG	2 cut(s)	93, 668
SduI	GDGCHC	2 cut(s)	118, 380
SetI	ASST	7 cut(s)	41, 285, 302, 314, 353, 528, 613
SfaNI	GCATC	3 cut(s)	95, 315, 399
SfuI	TTCGAA	1 cut(s)	336
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	3 cut(s)	236, 542, 614
SmoI	CTYRAG	3 cut(s)	236, 542, 614
Sse9I	AATT	2 cut(s)	216, 461
SseBI	AGGCCT	1 cut(s)	561
SsiI	CCGC	4 cut(s)	172, 272, 325, 515
SspMI	CTAG	3 cut(s)	137, 329, 428
StuI	AGGCCT	1 cut(s)	561
StyD4I	CCNGG	2 cut(s)	91, 666
StyI	CCWWGG	1 cut(s)	604
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	4 cut(s)	245, 251, 336, 509
TasI	AATT	2 cut(s)	216, 461
TatI	WGTACW	1 cut(s)	72
TauI	GCSGC	2 cut(s)	327, 517
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	3 cut(s)	195, 237, 543
Tru9I	TTAA	3 cut(s)	195, 237, 543
TseFI	GTSAC	2 cut(s)	167, 521
TseI	GCWGC	1 cut(s)	517
Tsp45I	GTSAC	2 cut(s)	167, 521
Vha464I	CTTAAG	2 cut(s)	236, 542
XmiI	GTMKAC	1 cut(s)	509
XspI	CTAG	3 cut(s)	137, 329, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.