Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002024

Physical Location & Seq

Genomic Coordinates Forward (+)

29847354 .. 29852112

Gene Structure 4759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1202700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAAAAAGATCATCATCAATGTTCAAAGTTCAACAAAGAACTGGGGGAAGCCAGCGGTGTTCCGATGCGATAGAGCCCCGATGTTCGGTAATGGCCTAGTCATGTCCCAAGGGGAAGAGTGGGTTCGTCACCGCCATGTTATCACTCCTGCTTTTAACCCAACAAACTTGAAGGCAATGGCGAGCTTAATCGTGGAGACCACCAACAAAATGCTAGACAATTGGAAAGATTCCGGACCTCAAGAAATCGACGTCGAGAGAGAAATCACAGCAACCGCTGGAGACATCATCGCCAAGACCAGCTTTGGCATCAGCTACCAAAGTGGCCGCCTAGTGTTCGAAAAACTAATAAGAACCTCGCAAATGACACTCTTCAAAACGAGCCGTCATGTGGGAGTTCCTTTCGGAAAAATTATGCACCCTAAGGAAACCCTAGAGGCCAGAAATCAACCAATTGTTCTTGTCAATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

158

Amino Acids

17.7

Weight (kDa)

9.81

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	3 - 128	3.7e-12	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52400
fragaria_vesca	FvH4_7g29610 FvH4_7g29611 FvH4_7g29620
malus_domestica	MD01G1202600.v1.1 MD01G1202700.v1.1 MD01G1203000.v1.1 MD07G1272000.v1.1 MD07G1272300.v1.1 MD07G1272400.v1.1
prunus_persica	Prupe.2G295700_v2.0.a1 Prupe.2G295800_v2.0.a1
pyrus_communis	pycom01g21190 pycom01g21200 pycom07g24870 pycom07g24880
rosa_chinensis	RchiOBHm_Chr1g0377591 RchiOBHm_Chr1g0377601 RchiOBHm_Chr1g0377631
rosa_laevigata	RLG00000026513 RLG00000026514
rosa_multiflora	Rmu_co8133244.1_g000001 Rmu_sc0002832.1_g000010 Rmu_sc0002832.1_g000011 Rmu_sc0002832.1_g000012 Rmu_sc0012587.1_g000009 Rmu_sc0035943.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281180 Rroxscaffold_4G00281200 Rroxscaffold_4G00281210
rosa_rugosa	Rorug01G0403700 Rorug01G0403800
rosa_samantha	Rh1AG428800 Rh1AG428900 Rh1AG429000 Rh1AG429100 Rh1BG380200 Rh1BG380400 Rh1CG394400 Rh1CG394600 Rh1DG411400 Rh1DG411600
rosa_wichuraiana	Rw1G036970 Rw1G036980 Rw1G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
AccIII	TCCGGA	1 cut(s)	233
AciI	CCGC	4 cut(s)	56, 133, 276, 328
AcoI	YGGCCR	1 cut(s)	325
AcyI	GRCGYC	1 cut(s)	252
AfiI	CCNNNNNNNGG	2 cut(s)	86, 391
AgsI	TTSAA	4 cut(s)	26, 33, 172, 376
AluBI	AGCT	3 cut(s)	186, 303, 315
AluI	AGCT	3 cut(s)	186, 303, 315
Alw26I	GTCTC	2 cut(s)	191, 276
Aor13HI	TCCGGA	1 cut(s)	233
AoxI	GGCC	3 cut(s)	94, 325, 438
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	122
AsuII	TTCGAA	1 cut(s)	339
AvaII	GGWCC	1 cut(s)	236
AxyI	CCTNAGG	1 cut(s)	423
BanII	GRGCYC	1 cut(s)	79
BceAI	ACGGC	1 cut(s)	369
BcoDI	GTCTC	2 cut(s)	191, 276
BfaI	CTAG	4 cut(s)	98, 215, 332, 434
BisI	GCNGC	1 cut(s)	328
BlsI	GCNGC	1 cut(s)	329
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	236
BmrI	ACTGGG	1 cut(s)	52
BmsI	GCATC	2 cut(s)	56, 318
BmuI	ACTGGG	1 cut(s)	52
BpmI	CTGGAG	1 cut(s)	300
Bpu14I	TTCGAA	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	225
BsaBI	GATNNNNATC	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	109
BsaWI	WCCGGW	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 391
Bse1I	ACTGG	1 cut(s)	47
Bse21I	CCTNAGG	1 cut(s)	423
Bse3DI	GCAATG	1 cut(s)	183
Bse8I	GATNNNNATC	1 cut(s)	14
BseAI	TCCGGA	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	109
BseJI	GATNNNNATC	1 cut(s)	14
BseLI	CCNNNNNNNGG	2 cut(s)	86, 391
BseMI	GCAATG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	47
BshFI	GGCC	3 cut(s)	96, 327, 440
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	2 cut(s)	86, 391
BsmAI	GTCTC	2 cut(s)	191, 276
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	3 cut(s)	96, 327, 440
Bso31I	GGTCTC	1 cut(s)	191
Bsp119I	TTCGAA	1 cut(s)	339
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp13I	TCCGGA	1 cut(s)	233
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	4 cut(s)	56, 133, 276, 328
BspANI	GGCC	3 cut(s)	96, 327, 440
BspEI	TCCGGA	1 cut(s)	233
BspT104I	TTCGAA	1 cut(s)	339
BspTNI	GGTCTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	1 cut(s)	9
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	109
Bst6I	CTCTTC	2 cut(s)	111, 377
BstACI	GRCGYC	1 cut(s)	252
BstBI	TTCGAA	1 cut(s)	339
BstC8I	GCNNGC	2 cut(s)	54, 184
BstDEI	CTNAG	1 cut(s)	423
BstKTI	GATC	1 cut(s)	12
BstMAI	GTCTC	2 cut(s)	191, 276
BstMBI	GATC	1 cut(s)	9
Bsu36I	CCTNAGG	1 cut(s)	423
BsuRI	GGCC	3 cut(s)	96, 327, 440
BtgZI	GCGATG	1 cut(s)	274
Cac8I	GCNNGC	2 cut(s)	54, 184
Cfr13I	GGNCC	1 cut(s)	236
CviAII	CATG	3 cut(s)	103, 137, 389
CviJI	RGCY	9 cut(s)	52, 77, 96, 186, 303, 315, 327, 384, 440
CviKI_1	RGCY	9 cut(s)	52, 77, 96, 186, 303, 315, 327, 384, 440
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
EaeI	YGGCCR	1 cut(s)	325
Eam1104I	CTCTTC	2 cut(s)	111, 377
EarI	CTCTTC	2 cut(s)	111, 377
Eco130I	CCWWGG	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	236
Eco81I	CCTNAGG	1 cut(s)	423
EcoT14I	CCWWGG	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	3 cut(s)	106, 140, 392
FaiI	YATR	4 cut(s)	104, 138, 390, 416
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	3 cut(s)	102, 136, 388
Fnu4HI	GCNGC	1 cut(s)	328
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	328
FspBI	CTAG	4 cut(s)	98, 215, 332, 434
GluI	GCNGC	1 cut(s)	328
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	3 cut(s)	96, 327, 440
HapII	CCGG	1 cut(s)	234
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	3 cut(s)	106, 140, 392
HinfI	GANTC	1 cut(s)	230
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	1 cut(s)	122
Hpy188I	TCNGA	2 cut(s)	65, 407
Hpy188III	TCNNGA	3 cut(s)	234, 242, 256
Hpy99I	CGWCG	2 cut(s)	254, 257
HpyAV	CCTTC	1 cut(s)	166
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	1 cut(s)	418
HpyF3I	CTNAG	1 cut(s)	423
HpySE526I	ACGT	1 cut(s)	252
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	106, 140, 392
Kpn2I	TCCGGA	1 cut(s)	233
Kzo9I	GATC	1 cut(s)	9
LpnPI	CCDG	7 cut(s)	28, 66, 162, 247, 264, 313, 454
LweI	GCATC	2 cut(s)	56, 318
MaeI	CTAG	4 cut(s)	98, 215, 332, 434
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	2 cut(s)	128, 364
MfeI	CAATTG	2 cut(s)	220, 453
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	3 cut(s)	220, 411, 453
MnlI	CCTC	3 cut(s)	249, 367, 430
MroI	TCCGGA	1 cut(s)	233
MseI	TTAA	2 cut(s)	156, 188
MslI	CAYNNNNRTG	1 cut(s)	135
MspA1I	CMGCKG	2 cut(s)	56, 278
MspI	CCGG	1 cut(s)	234
MunI	CAATTG	2 cut(s)	220, 453
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	3 cut(s)	106, 140, 392
NmuCI	GTSAC	1 cut(s)	128
NspV	TTCGAA	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	329
PspPI	GGNCC	1 cut(s)	236
RseI	CAYNNNNRTG	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	156, 188
SatI	GCNGC	1 cut(s)	328
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	6 cut(s)	188, 241, 255, 305, 317, 359
SfaNI	GCATC	2 cut(s)	56, 318
SfuI	TTCGAA	1 cut(s)	339
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
Sse9I	AATT	3 cut(s)	220, 411, 453
SsiI	CCGC	4 cut(s)	56, 133, 276, 328
SspMI	CTAG	4 cut(s)	98, 215, 332, 434
StyI	CCWWGG	1 cut(s)	109
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	3 cut(s)	249, 255, 339
TasI	AATT	3 cut(s)	220, 411, 453
TauI	GCSGC	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	2 cut(s)	156, 188
Tru9I	TTAA	2 cut(s)	156, 188
TseFI	GTSAC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	236
XspI	CTAG	4 cut(s)	98, 215, 332, 434
ZraI	GACGTC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.