Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002024

Physical Location & Seq

Genomic Coordinates Forward (+)

51121793 .. 51124473

Gene Structure 2681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0403700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1683 bp

ATGGCAGCCGAACCGGTTCCGGGCACGCCCGGTATAAAGGAAATAAGGTCCGACTCCGGGCCCGAGATGTTTCAGTTTAACACGAATGCTGGTCATGGAGGAGGTTCATTGTCGCCGAGTCCGCCGCCCGGGATAAGGAGGGTGAGTTTGAGGGCCGAGATTGATACGTCGCCGCCTTTCGGTTCGGTCAAGGAGGCTGTGACCCGTTTTGGCGGCAGCGGGTCTTGGATACCATACTATAAGCTCGGAGAAAACTATAATGGGGGTGAAGAGTTTGACTTAAAGAAAGTTGAGGAACAAGCAGCAGAGTTGGAGAAGGATCTGATTGTAAAAGAGCTAGAGACGCTTGATGTTTTAGAAGAACTAGCAACAACAAAGAGAATTGTGGAGGAGCTAAAGAGACAGCTGCAGAAAGAAGCATTGAAATGCTTGACAGTTCCACCAGAGTACCATTCAGAAGCAGAGCACATGTCACCATCCCCTGCCATCAAAGAAATGAACAAGGAAAATAATTTCATGATGATGGGAAATTCAAGTCCCAATCACCCTTCTTCCTCACCTGATCTGATCTTGATGGAGCTGAAACAAGCGAAAATGAACCTCGGTAACACGATCAATGACCTAGGGGTGATTCAATCTTCTGTTGAATCTTTGAACAAGAAGATGCAAAACGAGAAAATTTTGCTTGAAAAAACCCGGGAGAGGTTGACTTCACAGTTTGCGGGGGTGTCATCACTAGAGGAGGAGATGAATAGCATAAAAGTGAAGACAAGAGCAGCTGATGATGCAGAAACCAAGACTAAGAAAATGGCCAAAGCTTCGAATTTTGAGGCCAAAACCAGCATGAAGAAGACTGCTGAAATGAGGTGGGTTGCGGCGAAGAAGATGGAAGAAGCAGCTAAGGCAGCAGAAGCTGTTGCTCTTGCTGACCTCAGGGCTCTAACGAGCTACTGTGAGAGCTCATCAGGGTATGTCCTTCCGGAACCGGAGAAACTGAGCTTGAATTCGAGAATGAAATCACCTATAAGCTCAAGAGCTCAAGAAGCTCATGGCTGGTTCAAGAAGAAGCTAGCAGATGCCATGTTCGAAATTGATGAAGCTAATGCATCCAAATTGGCCATACTAAAGAAGTTGAAGGAAGCAACAGAAGAAGTCAATTACAGTAAGCAATTCTTGGAGGAGGCATTGAACAATGTAGAACTCGCGAATCGGAAGCAACTTGCTGCTGAAGAGGCTCTACAGATTTTGGTGCCAGAGCATGGTAAGGGACAGGTGGCTTATAACACAAGCAACGTAAACAATTTCCAACCATCGAATTACCCCCGGAATTCTCCCATTAATGAGATGAGCAGGTCATCAGTCCTAGCAAACGATCTCCATCGTTCAAAGCCCCTTCTAAGGCCAAACGTTTCACTGCGAGATGTACTTAGCAGGAAACAGGTTCTCCCCGAAGATTTTGTTCCGAAAAAGGAATTGGATCGCGGTCATGCTGAGACACATAGAGTGGCTTTGAGTGAAATGCTTCATGCACTGAGGGAGGATCTGACATGTCCTTCAAAAGTTGAGCAGAAAGATGGGAATGATCGACAGAGGAAGAAGTTTGGTTTCATCCAGATTTCACTTCCCTTGTCAAGGCCAAGTAAGAAAAAGATGCAAACTTCGAACGCCAATGGGACACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

560

Amino Acids

62.3

Weight (kDa)

8.12

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WEMBL	PF05701	52 - 138	2.7e-14	Weak chloroplast movement under blue light
WEMBL	PF05701	269 - 420	4.8e-12	Weak chloroplast movement under blue light

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52400
fragaria_vesca	FvH4_7g29610 FvH4_7g29611 FvH4_7g29620
malus_domestica	MD01G1202600.v1.1 MD01G1202700.v1.1 MD01G1203000.v1.1 MD07G1272000.v1.1 MD07G1272300.v1.1 MD07G1272400.v1.1
prunus_persica	Prupe.2G295700_v2.0.a1 Prupe.2G295800_v2.0.a1
pyrus_communis	pycom01g21190 pycom01g21200 pycom07g24870 pycom07g24880
rosa_chinensis	RchiOBHm_Chr1g0377591 RchiOBHm_Chr1g0377601 RchiOBHm_Chr1g0377631
rosa_laevigata	RLG00000026513 RLG00000026514
rosa_multiflora	Rmu_co8133244.1_g000001 Rmu_sc0002832.1_g000010 Rmu_sc0002832.1_g000011 Rmu_sc0002832.1_g000012 Rmu_sc0012587.1_g000009 Rmu_sc0035943.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281180 Rroxscaffold_4G00281200 Rroxscaffold_4G00281210
rosa_rugosa	Rorug01G0403700 Rorug01G0403800
rosa_samantha	Rh1AG428800 Rh1AG428900 Rh1AG429000 Rh1AG429100 Rh1BG380200 Rh1BG380400 Rh1CG394400 Rh1CG394600 Rh1DG411400 Rh1DG411600
rosa_wichuraiana	Rw1G036970 Rw1G036980 Rw1G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1281
Acc36I	ACCTGC	1 cut(s)	1341
AccB1I	GGYRCC	1 cut(s)	1249
AccB7I	CCANNNNNTGG	1 cut(s)	1259
AccII	CGCG	2 cut(s)	1205, 1482
AccIII	TCCGGA	1 cut(s)	979
AciI	CCGC	8 cut(s)	122, 125, 173, 213, 219, 722, 875, 1482
AclI	AACGTT	1 cut(s)	1407
AclWI	GGATC	3 cut(s)	327, 1485, 1548
AcoI	YGGCCR	2 cut(s)	810, 1116
AcsI	RAATTY	5 cut(s)	529, 678, 823, 1003, 1327
AcuI	CTGAAG	1 cut(s)	1248
AfaI	GTAC	2 cut(s)	449, 1425
AfiI	CCNNNNNNNGG	9 cut(s)	20, 57, 128, 135, 179, 702, 1259, 1398, 1632
AflIII	ACRYGT	2 cut(s)	468, 1547
AgeI	ACCGGT	1 cut(s)	13
AjuI	GAANNNNNNNTTGG	2 cut(s)	1457, 1489
Alw21I	GWGCWC	3 cut(s)	468, 962, 1039
Alw26I	GTCTC	3 cut(s)	335, 394, 1487
AlwI	GGATC	3 cut(s)	327, 1485, 1548
AlwNI	CAGNNNCTG	1 cut(s)	914
Ama87I	CYCGRG	3 cut(s)	62, 128, 696
Aor13HI	TCCGGA	1 cut(s)	979
AoxI	GGCC	7 cut(s)	59, 153, 810, 831, 1116, 1400, 1634
ApaI	GGGCCC	1 cut(s)	63
ApeKI	GCWGC	8 cut(s)	5, 216, 302, 406, 776, 896, 905, 1223
ApoI	RAATTY	5 cut(s)	529, 678, 823, 1003, 1327
AseI	ATTAAT	1 cut(s)	1338
AsiGI	ACCGGT	1 cut(s)	13
Asp700I	GAANNNNTTC	2 cut(s)	15, 1521
AspA2I	CCTAGG	1 cut(s)	622
AspS9I	GGNCC	4 cut(s)	48, 59, 60, 153
AsuC2I	CCSGG	8 cut(s)	21, 30, 58, 129, 130, 697, 698, 1324
AsuHPI	GGTGA	7 cut(s)	154, 278, 465, 536, 549, 640, 1011
AsuII	TTCGAA	3 cut(s)	821, 1086, 1661
AsuNHI	GCTAGC	1 cut(s)	1069
AvaI	CYCGRG	3 cut(s)	62, 128, 696
AvaII	GGWCC	1 cut(s)	48
AvrII	CCTAGG	1 cut(s)	622
AxyI	CCTNAGG	1 cut(s)	932
BaeGI	GKGCMC	2 cut(s)	26, 63
BaeI	ACNNNNGTAYC	2 cut(s)	431, 464
BalI	TGGCCA	2 cut(s)	812, 1118
BanI	GGYRCC	1 cut(s)	1249
BanII	GRGCYC	4 cut(s)	63, 940, 962, 1039
BarI	GAAGNNNNNNTAC	2 cut(s)	1221, 1253
BbsI	GAAGAC	2 cut(s)	773, 857
Bbv12I	GWGCWC	3 cut(s)	468, 962, 1039
BbvI	GCAGC	8 cut(s)	17, 228, 314, 393, 788, 908, 917, 1210
BccI	CCATC	8 cut(s)	484, 494, 517, 568, 880, 1318, 1386, 1568
BciVI	GTATCC	1 cut(s)	222
BcnI	CCSGG	8 cut(s)	21, 30, 58, 129, 130, 697, 698, 1324
BcoDI	GTCTC	3 cut(s)	335, 394, 1487
BfaI	CTAG	6 cut(s)	338, 365, 623, 737, 1070, 1364
BfmI	CTRYAG	2 cut(s)	407, 1238
BfuAI	ACCTGC	1 cut(s)	1341
BfuI	GTATCC	1 cut(s)	222
BlnI	CCTAGG	1 cut(s)	622
Bme1390I	CCNGG	8 cut(s)	21, 30, 58, 129, 130, 697, 698, 1324
Bme18I	GGWCC	1 cut(s)	48
BmeT110I	CYCGRG	3 cut(s)	62, 128, 696
BmgT120I	GGNCC	4 cut(s)	48, 59, 60, 153
BmiI	GGNNCC	4 cut(s)	18, 61, 984, 1251
BmrFI	CCNGG	8 cut(s)	21, 30, 58, 129, 130, 697, 698, 1324
BmsI	GCATC	5 cut(s)	654, 775, 1066, 1115, 1641
BmtI	GCTAGC	1 cut(s)	1073
BpiI	GAAGAC	2 cut(s)	773, 857
Bpu10I	CCTNAGC	1 cut(s)	900
Bpu14I	TTCGAA	3 cut(s)	821, 1086, 1661
BpuEI	CTTGAG	2 cut(s)	1015, 1023
BpuMI	CCSGG	8 cut(s)	21, 30, 58, 129, 130, 697, 698, 1324
BsaBI	GATNNNNATC	1 cut(s)	1377
BsaJI	CCNNGG	5 cut(s)	128, 601, 622, 696, 1322
BsaWI	WCCGGW	3 cut(s)	13, 979, 985
BsaXI	ACNNNNNCTCC	4 cut(s)	130, 160, 1428, 1458
Bsc4I	CCNNNNNNNGG	9 cut(s)	20, 57, 128, 135, 179, 702, 1259, 1398, 1632
Bse118I	RCCGGY	1 cut(s)	13
Bse21I	CCTNAGG	1 cut(s)	932
Bse8I	GATNNNNATC	1 cut(s)	1377
BseAI	TCCGGA	1 cut(s)	979
BseDI	CCNNGG	5 cut(s)	128, 601, 622, 696, 1322
BseGI	GGATG	3 cut(s)	476, 1106, 1608
BseJI	GATNNNNATC	1 cut(s)	1377
BseLI	CCNNNNNNNGG	9 cut(s)	20, 57, 128, 135, 179, 702, 1259, 1398, 1632
BseMII	CTCAG	4 cut(s)	946, 986, 1482, 1523
BseRI	GAGGAG	5 cut(s)	114, 404, 755, 758, 1193
BseSI	GKGCMC	2 cut(s)	26, 63
BseXI	GCAGC	8 cut(s)	17, 228, 314, 393, 788, 908, 917, 1210
Bsh1236I	CGCG	2 cut(s)	1205, 1482
BshFI	GGCC	7 cut(s)	61, 155, 812, 833, 1118, 1402, 1636
BshNI	GGYRCC	1 cut(s)	1249
BshTI	ACCGGT	1 cut(s)	13
BsiHKAI	GWGCWC	3 cut(s)	468, 962, 1039
BsiHKCI	CYCGRG	3 cut(s)	62, 128, 696
BsiSI	CCGG	9 cut(s)	14, 20, 30, 57, 129, 697, 980, 986, 1324
BslFI	GGGAC	2 cut(s)	522, 1281
BslI	CCNNNNNNNGG	9 cut(s)	20, 57, 128, 135, 179, 702, 1259, 1398, 1632
BsmAI	GTCTC	3 cut(s)	335, 394, 1487
BsmBI	CGTCTC	1 cut(s)	335
BsmFI	GGGAC	2 cut(s)	522, 1281
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	7 cut(s)	61, 155, 812, 833, 1118, 1402, 1636
BsoBI	CYCGRG	3 cut(s)	62, 128, 696
Bsp119I	TTCGAA	3 cut(s)	821, 1086, 1661
Bsp120I	GGGCCC	1 cut(s)	59
Bsp1286I	GDGCHC	6 cut(s)	26, 63, 468, 940, 962, 1039
Bsp13I	TCCGGA	1 cut(s)	979
Bsp143I	GATC	8 cut(s)	319, 562, 567, 612, 1372, 1477, 1540, 1582
Bsp68I	TCGCGA	1 cut(s)	1205
BspACI	CCGC	8 cut(s)	122, 125, 173, 213, 219, 722, 875, 1482
BspANI	GGCC	7 cut(s)	61, 155, 812, 833, 1118, 1402, 1636
BspCNI	CTCAG	4 cut(s)	945, 987, 1483, 1524
BspEI	TCCGGA	1 cut(s)	979
BspFNI	CGCG	2 cut(s)	1205, 1482
BspHI	TCATGA	1 cut(s)	516
BspLI	GGNNCC	4 cut(s)	18, 61, 984, 1251
BspMAI	CTGCAG	1 cut(s)	411
BspMI	ACCTGC	1 cut(s)	1341
BspOI	GCTAGC	1 cut(s)	1073
BspPI	GGATC	3 cut(s)	327, 1485, 1548
BspT104I	TTCGAA	3 cut(s)	821, 1086, 1661
BspT107I	GGYRCC	1 cut(s)	1249
BsrFI	RCCGGY	1 cut(s)	13
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	5 cut(s)	128, 601, 622, 696, 1322
BssMI	GATC	8 cut(s)	319, 562, 567, 612, 1372, 1477, 1540, 1582
BssT1I	CCWWGG	1 cut(s)	622
Bst4CI	ACNGT	4 cut(s)	436, 717, 953, 1163
Bst6I	CTCTTC	2 cut(s)	264, 1224
BstBI	TTCGAA	3 cut(s)	821, 1086, 1661
BstC8I	GCNNGC	2 cut(s)	26, 1071
BstDEI	CTNAG	8 cut(s)	801, 900, 932, 995, 1397, 1427, 1491, 1532
BstENI	CCTNNNNNAGG	1 cut(s)	1630
BstF5I	GGATG	3 cut(s)	476, 1106, 1608
BstFNI	CGCG	2 cut(s)	1205, 1482
BstKTI	GATC	8 cut(s)	322, 565, 570, 615, 1375, 1480, 1543, 1585
BstMAI	GTCTC	3 cut(s)	335, 394, 1487
BstMBI	GATC	8 cut(s)	319, 562, 567, 612, 1372, 1477, 1540, 1582
BstMWI	GCNNNNNNNGC	8 cut(s)	121, 343, 785, 902, 905, 911, 1043, 1232
BstNSI	RCATGY	2 cut(s)	472, 1551
BstSCI	CCNGG	8 cut(s)	19, 28, 56, 127, 128, 695, 696, 1322
BstSFI	CTRYAG	2 cut(s)	407, 1238
BstSLI	GKGCMC	2 cut(s)	26, 63
BstUI	CGCG	2 cut(s)	1205, 1482
BstV1I	GCAGC	8 cut(s)	17, 228, 314, 393, 788, 908, 917, 1210
BstV2I	GAAGAC	2 cut(s)	773, 857
BstX2I	RGATCY	2 cut(s)	319, 1540
BstYI	RGATCY	2 cut(s)	319, 1540
Bsu36I	CCTNAGG	1 cut(s)	932
BsuI	GTATCC	1 cut(s)	222
BsuRI	GGCC	7 cut(s)	61, 155, 812, 833, 1118, 1402, 1636
BtsCI	GGATG	3 cut(s)	476, 1106, 1608
BtsI	GCAGTG	1 cut(s)	1412
BtsIMutI	CAGTG	2 cut(s)	1412, 1529
BtuMI	TCGCGA	1 cut(s)	1205
BveI	ACCTGC	1 cut(s)	1341
Cac8I	GCNNGC	2 cut(s)	26, 1071
CaiI	CAGNNNCTG	1 cut(s)	914
CciI	TCATGA	1 cut(s)	516
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	4 cut(s)	48, 59, 60, 153
Cfr9I	CCCGGG	2 cut(s)	128, 696
CseI	GACGC	1 cut(s)	352
Csp6I	GTAC	2 cut(s)	448, 1424
CspAI	ACCGGT	1 cut(s)	13
CviQI	GTAC	2 cut(s)	448, 1424
DdeI	CTNAG	8 cut(s)	801, 900, 932, 995, 1397, 1427, 1491, 1532
DpnI	GATC	8 cut(s)	321, 564, 569, 614, 1374, 1479, 1542, 1584
DpnII	GATC	8 cut(s)	319, 562, 567, 612, 1372, 1477, 1540, 1582
EaeI	YGGCCR	2 cut(s)	810, 1116
Eam1104I	CTCTTC	2 cut(s)	264, 1224
EarI	CTCTTC	2 cut(s)	264, 1224
EciI	GGCGGA	1 cut(s)	111
Ecl136II	GAGCTC	2 cut(s)	960, 1037
Eco130I	CCWWGG	1 cut(s)	622
Eco24I	GRGCYC	4 cut(s)	63, 940, 962, 1039
Eco47I	GGWCC	1 cut(s)	48
Eco53kI	GAGCTC	2 cut(s)	960, 1037
Eco57I	CTGAAG	1 cut(s)	1248
Eco81I	CCTNAGG	1 cut(s)	932
Eco88I	CYCGRG	3 cut(s)	62, 128, 696
EcoICRI	GAGCTC	2 cut(s)	960, 1037
EcoNI	CCTNNNNNAGG	1 cut(s)	1630
EcoRI	GAATTC	2 cut(s)	1003, 1327
EcoT14I	CCWWGG	1 cut(s)	622
EcoT22I	ATGCAT	1 cut(s)	1108
EcoT38I	GRGCYC	4 cut(s)	63, 940, 962, 1039
ErhI	CCWWGG	1 cut(s)	622
Esp3I	CGTCTC	1 cut(s)	335
FalI	AAGNNNNNCTT	2 cut(s)	1157, 1189
FaqI	GGGAC	2 cut(s)	522, 1281
FauI	CCCGC	2 cut(s)	212, 715
FokI	GGATG	3 cut(s)	463, 1093, 1595
FriOI	GRGCYC	4 cut(s)	63, 940, 962, 1039
FspBI	CTAG	6 cut(s)	338, 365, 623, 737, 1070, 1364
HaeIII	GGCC	7 cut(s)	61, 155, 812, 833, 1118, 1402, 1636
HapII	CCGG	9 cut(s)	14, 20, 30, 57, 129, 697, 980, 986, 1324
HgaI	GACGC	1 cut(s)	352
HincII	GTYRAC	1 cut(s)	708
HindII	GTYRAC	1 cut(s)	708
HindIII	AAGCTT	1 cut(s)	816
HinfI	GANTC	5 cut(s)	53, 118, 631, 647, 1207
HpaII	CCGG	9 cut(s)	14, 20, 30, 57, 129, 697, 980, 986, 1324
HphI	GGTGA	7 cut(s)	154, 278, 465, 536, 549, 640, 1011
Hpy166II	GTNNAC	2 cut(s)	708, 1297
Hpy188I	TCNGA	8 cut(s)	52, 248, 324, 457, 567, 1212, 1464, 1545
Hpy188III	TCNNGA	9 cut(s)	517, 571, 980, 1008, 1032, 1040, 1060, 1204, 1612
Hpy8I	GTNNAC	2 cut(s)	708, 1297
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	6 cut(s)	310, 558, 986, 1129, 1403, 1563
HpyCH4III	ACNGT	4 cut(s)	436, 717, 953, 1163
HpyCH4IV	ACGT	3 cut(s)	167, 1293, 1407
HpyCH4V	TGCA	6 cut(s)	409, 667, 788, 1106, 1529, 1654
HpyF10VI	GCNNNNNNNGC	8 cut(s)	121, 343, 785, 902, 905, 911, 1043, 1232
HpyF3I	CTNAG	8 cut(s)	801, 900, 932, 995, 1397, 1427, 1491, 1532
HpySE526I	ACGT	3 cut(s)	167, 1293, 1407
Kpn2I	TCCGGA	1 cut(s)	979
Kzo9I	GATC	8 cut(s)	319, 562, 567, 612, 1372, 1477, 1540, 1582
LmnI	GCTCC	2 cut(s)	391, 577
Lsp1109I	GCAGC	8 cut(s)	17, 228, 314, 393, 788, 908, 917, 1210
LweI	GCATC	5 cut(s)	654, 775, 1066, 1115, 1641
MaeI	CTAG	6 cut(s)	338, 365, 623, 737, 1070, 1364
MaeII	ACGT	3 cut(s)	167, 1293, 1407
MaeIII	GTNAC	3 cut(s)	199, 471, 605
MalI	GATC	8 cut(s)	321, 564, 569, 614, 1374, 1479, 1542, 1584
MboI	GATC	8 cut(s)	319, 562, 567, 612, 1372, 1477, 1540, 1582
MflI	RGATCY	2 cut(s)	319, 1540
MhlI	GDGCHC	6 cut(s)	26, 63, 468, 940, 962, 1039
MlsI	TGGCCA	2 cut(s)	812, 1118
MluNI	TGGCCA	2 cut(s)	812, 1118
MlyI	GAGTC	2 cut(s)	47, 127
MmeI	TCCRAC	3 cut(s)	75, 291, 1330
Mox20I	TGGCCA	2 cut(s)	812, 1118
Mph1103I	ATGCAT	1 cut(s)	1108
MroI	TCCGGA	1 cut(s)	979
MroXI	GAANNNNTTC	2 cut(s)	15, 1521
MscI	TGGCCA	2 cut(s)	812, 1118
MseI	TTAA	3 cut(s)	78, 281, 1338
MslI	CAYNNNNRTG	3 cut(s)	424, 521, 761
Msp20I	TGGCCA	2 cut(s)	812, 1118
MspA1I	CMGCKG	3 cut(s)	219, 406, 779
MspI	CCGG	9 cut(s)	14, 20, 30, 57, 129, 697, 980, 986, 1324
MspR9I	CCNGG	8 cut(s)	21, 30, 58, 129, 130, 697, 698, 1324
Mva1269I	GAATGC	1 cut(s)	91
MvnI	CGCG	2 cut(s)	1205, 1482
MwoI	GCNNNNNNNGC	8 cut(s)	121, 343, 785, 902, 905, 911, 1043, 1232
NciI	CCSGG	8 cut(s)	21, 30, 58, 129, 130, 697, 698, 1324
NdeII	GATC	8 cut(s)	319, 562, 567, 612, 1372, 1477, 1540, 1582
NheI	GCTAGC	1 cut(s)	1069
NlaIV	GGNNCC	4 cut(s)	18, 61, 984, 1251
NmeAIII	GCCGAG	2 cut(s)	141, 181
NmuCI	GTSAC	2 cut(s)	199, 471
NruI	TCGCGA	1 cut(s)	1205
NsiI	ATGCAT	1 cut(s)	1108
NspI	RCATGY	2 cut(s)	472, 1551
NspV	TTCGAA	3 cut(s)	821, 1086, 1661
PagI	TCATGA	1 cut(s)	516
PciI	ACATGT	2 cut(s)	468, 1547
PctI	GAATGC	1 cut(s)	91
PdmI	GAANNNNTTC	2 cut(s)	15, 1521
PfeI	GAWTC	3 cut(s)	631, 647, 1207
PflMI	CCANNNNNTGG	1 cut(s)	1259
PinAI	ACCGGT	1 cut(s)	13
PleI	GAGTC	2 cut(s)	47, 126
PpsI	GAGTC	2 cut(s)	47, 126
PscI	ACATGT	2 cut(s)	468, 1547
PshBI	ATTAAT	1 cut(s)	1338
PsiI	TTATAA	1 cut(s)	1281
Psp124BI	GAGCTC	2 cut(s)	962, 1039
Psp1406I	AACGTT	1 cut(s)	1407
PspN4I	GGNNCC	4 cut(s)	18, 61, 984, 1251
PspOMI	GGGCCC	1 cut(s)	59
PspPI	GGNCC	4 cut(s)	48, 59, 60, 153
PstI	CTGCAG	1 cut(s)	411
PstNI	CAGNNNCTG	1 cut(s)	914
PsuI	RGATCY	2 cut(s)	319, 1540
PvuII	CAGCTG	2 cut(s)	406, 779
RruI	TCGCGA	1 cut(s)	1205
RsaI	GTAC	2 cut(s)	449, 1425
RsaNI	GTAC	2 cut(s)	448, 1424
RseI	CAYNNNNRTG	3 cut(s)	424, 521, 761
SacI	GAGCTC	2 cut(s)	962, 1039
SaqAI	TTAA	3 cut(s)	78, 281, 1338
Sau3AI	GATC	8 cut(s)	319, 562, 567, 612, 1372, 1477, 1540, 1582
Sau96I	GGNCC	4 cut(s)	48, 59, 60, 153
SchI	GAGTC	2 cut(s)	47, 127
ScrFI	CCNGG	8 cut(s)	21, 30, 58, 129, 130, 697, 698, 1324
SduI	GDGCHC	6 cut(s)	26, 63, 468, 940, 962, 1039
SfaNI	GCATC	5 cut(s)	654, 775, 1066, 1115, 1641
SfcI	CTRYAG	2 cut(s)	407, 1238
SfuI	TTCGAA	3 cut(s)	821, 1086, 1661
SinI	GGWCC	1 cut(s)	48
SmaI	CCCGGG	2 cut(s)	130, 698
SmiMI	CAYNNNNRTG	3 cut(s)	424, 521, 761
SmlI	CTYRAG	2 cut(s)	1030, 1038
SmoI	CTYRAG	2 cut(s)	1030, 1038
SsiI	CCGC	8 cut(s)	122, 125, 173, 213, 219, 722, 875, 1482
SspMI	CTAG	6 cut(s)	338, 365, 623, 737, 1070, 1364
SstI	GAGCTC	2 cut(s)	962, 1039
StyD4I	CCNGG	8 cut(s)	19, 28, 56, 127, 128, 695, 696, 1322
StyI	CCWWGG	1 cut(s)	622
TaaI	ACNGT	4 cut(s)	436, 717, 953, 1163
TaiI	ACGT	3 cut(s)	170, 1296, 1410
TaqI	TCGA	6 cut(s)	821, 1007, 1086, 1313, 1585, 1661
TaqII	GACCGA	1 cut(s)	175
TatI	WGTACW	1 cut(s)	1423
TauI	GCSGC	4 cut(s)	127, 175, 216, 878
TfiI	GAWTC	3 cut(s)	631, 647, 1207
Tru1I	TTAA	3 cut(s)	78, 281, 1338
Tru9I	TTAA	3 cut(s)	78, 281, 1338
TscAI	CASTG	2 cut(s)	1419, 1536
TseFI	GTSAC	2 cut(s)	199, 471
TseI	GCWGC	8 cut(s)	5, 216, 302, 406, 776, 896, 905, 1223
Tsp45I	GTSAC	2 cut(s)	199, 471
TspMI	CCCGGG	2 cut(s)	128, 696
TspRI	CASTG	2 cut(s)	1419, 1536
Van91I	CCANNNNNTGG	1 cut(s)	1259
VpaK11BI	GGWCC	1 cut(s)	48
VspI	ATTAAT	1 cut(s)	1338
XagI	CCTNNNNNAGG	1 cut(s)	1630
XapI	RAATTY	5 cut(s)	529, 678, 823, 1003, 1327
XceI	RCATGY	2 cut(s)	472, 1551
XmaI	CCCGGG	2 cut(s)	128, 696
XmaJI	CCTAGG	1 cut(s)	622
XmnI	GAANNNNTTC	2 cut(s)	15, 1521
XspI	CTAG	6 cut(s)	338, 365, 623, 737, 1070, 1364
Zsp2I	ATGCAT	1 cut(s)	1108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.