Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8133244.1

Orthogroup ID

OG0002024

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 625

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8133244.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 457 bp

ctgtacttactctgcagattgttactttcttgctgggtttttcctgtcctgacttacaggaagcttaagaaaaatgggttaactggtccgactcctagttttcctttgggaaatcttagcgagatgaagaagaagactagccaaagctctacttcttcttcatttgggccatcttcaaatagtataacccatgacatacactcaactctctttccctactttgctcgctggcagaaagcctacggaaaaatgttcgtttactggttgggcacagagccattcctatacgtagcagatgcagccttactgaaaaaattgtcttcggaggtcaccgcaaagaattggggcaaaccggctgtgtttagacgcgatagagctcccatgtttggtaatggccttgtcatgtccgaaggggatgattgggtccgtcaccgccatgttatcactccagcattta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

152

Amino Acids

17.24

Weight (kDa)

9.92

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52400
fragaria_vesca	FvH4_7g29610 FvH4_7g29611 FvH4_7g29620
malus_domestica	MD01G1202600.v1.1 MD01G1202700.v1.1 MD01G1203000.v1.1 MD07G1272000.v1.1 MD07G1272300.v1.1 MD07G1272400.v1.1
prunus_persica	Prupe.2G295700_v2.0.a1 Prupe.2G295800_v2.0.a1
pyrus_communis	pycom01g21190 pycom01g21200 pycom07g24870 pycom07g24880
rosa_chinensis	RchiOBHm_Chr1g0377591 RchiOBHm_Chr1g0377601 RchiOBHm_Chr1g0377631
rosa_laevigata	RLG00000026513 RLG00000026514
rosa_multiflora	Rmu_co8133244.1_g000001 Rmu_sc0002832.1_g000010 Rmu_sc0002832.1_g000011 Rmu_sc0002832.1_g000012 Rmu_sc0012587.1_g000009 Rmu_sc0035943.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281180 Rroxscaffold_4G00281200 Rroxscaffold_4G00281210
rosa_rugosa	Rorug01G0403700 Rorug01G0403800
rosa_samantha	Rh1AG428800 Rh1AG428900 Rh1AG429000 Rh1AG429100 Rh1BG380200 Rh1BG380400 Rh1CG394400 Rh1CG394600 Rh1DG411400 Rh1DG411600
rosa_wichuraiana	Rw1G036970 Rw1G036980 Rw1G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	369
AciI	CCGC	2 cut(s)	333, 433
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	386
AflII	CTTAAG	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	177
AluBI	AGCT	3 cut(s)	64, 147, 377
AluI	AGCT	3 cut(s)	64, 147, 377
Alw21I	GWGCWC	1 cut(s)	379
AoxI	GGCC	2 cut(s)	167, 394
ApeKI	GCWGC	1 cut(s)	299
AspS9I	GGNCC	3 cut(s)	86, 167, 424
AsuHPI	GGTGA	2 cut(s)	322, 422
AvaII	GGWCC	2 cut(s)	86, 424
BaeGI	GKGCMC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	379
BbsI	GAAGAC	2 cut(s)	140, 312
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	1 cut(s)	311
BccI	CCATC	1 cut(s)	178
BfaI	CTAG	2 cut(s)	96, 138
BfmI	CTRYAG	1 cut(s)	13
BfrI	CTTAAG	1 cut(s)	65
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
Bme18I	GGWCC	2 cut(s)	86, 424
BmgT120I	GGNCC	3 cut(s)	86, 167, 424
BmiI	GGNNCC	1 cut(s)	425
BmsI	GCATC	1 cut(s)	286
BpiI	GAAGAC	2 cut(s)	140, 312
BpmI	CTGGAG	1 cut(s)	432
BsaAI	YACGTR	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	386
Bse118I	RCCGGY	1 cut(s)	352
Bse1I	ACTGG	2 cut(s)	88, 266
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	1 cut(s)	386
BseNI	ACTGG	2 cut(s)	88, 266
BseSI	GKGCMC	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	311
BseYI	CCCAGC	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	369
BshFI	GGCC	2 cut(s)	169, 396
BsiHKAI	GWGCWC	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	353
BslI	CCNNNNNNNGG	1 cut(s)	386
BsnI	GGCC	2 cut(s)	169, 396
Bsp1286I	GDGCHC	2 cut(s)	272, 379
BspACI	CCGC	2 cut(s)	333, 433
BspANI	GGCC	2 cut(s)	169, 396
BspFNI	CGCG	1 cut(s)	369
BspLI	GGNNCC	1 cut(s)	425
BspMAI	CTGCAG	1 cut(s)	17
BspTI	CTTAAG	1 cut(s)	65
BsrFI	RCCGGY	1 cut(s)	352
BsrI	ACTGG	2 cut(s)	88, 266
BssAI	RCCGGY	1 cut(s)	352
BstAFI	CTTAAG	1 cut(s)	65
BstBAI	YACGTR	1 cut(s)	289
BstC8I	GCNNGC	2 cut(s)	226, 230
BstDEI	CTNAG	1 cut(s)	116
BstEII	GGTNACC	1 cut(s)	328
BstF5I	GGATG	1 cut(s)	421
BstFNI	CGCG	1 cut(s)	369
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstPI	GGTNACC	1 cut(s)	328
BstSFI	CTRYAG	1 cut(s)	13
BstSLI	GKGCMC	1 cut(s)	272
BstSNI	TACGTA	1 cut(s)	289
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	311
BstV2I	GAAGAC	2 cut(s)	140, 312
BsuRI	GGCC	2 cut(s)	169, 396
BtsCI	GGATG	1 cut(s)	421
Cac8I	GCNNGC	2 cut(s)	226, 230
Cfr10I	RCCGGY	1 cut(s)	352
Cfr13I	GGNCC	3 cut(s)	86, 167, 424
CseI	GACGC	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	4 cut(s)	191, 382, 403, 437
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	116
Ecl136II	GAGCTC	1 cut(s)	377
Eco105I	TACGTA	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	379
Eco47I	GGWCC	2 cut(s)	86, 424
Eco53kI	GAGCTC	1 cut(s)	377
Eco91I	GGTNACC	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	377
EcoO65I	GGTNACC	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	379
FaeI	CATG	4 cut(s)	194, 385, 406, 440
FaiI	YATR	7 cut(s)	185, 192, 197, 286, 383, 404, 438
FalI	AAGNNNNNCTT	2 cut(s)	136, 168
FatI	CATG	4 cut(s)	190, 381, 402, 436
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	1 cut(s)	428
FriOI	GRGCYC	1 cut(s)	379
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	2 cut(s)	96, 138
GluI	GCNGC	1 cut(s)	300
GsaI	CCCAGC	1 cut(s)	37
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	2 cut(s)	169, 396
HapII	CCGG	1 cut(s)	353
HgaI	GACGC	1 cut(s)	375
Hin1II	CATG	4 cut(s)	194, 385, 406, 440
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	1 cut(s)	91
HpaI	GTTAAC	1 cut(s)	81
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	2 cut(s)	322, 422
Hpy166II	GTNNAC	2 cut(s)	81, 259
Hpy188I	TCNGA	3 cut(s)	90, 325, 409
Hpy188III	TCNNGA	1 cut(s)	49
Hpy8I	GTNNAC	2 cut(s)	81, 259
HpyAV	CCTTC	1 cut(s)	404
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	2 cut(s)	15, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	1 cut(s)	116
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	4 cut(s)	194, 385, 406, 440
KspAI	GTTAAC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	382
LpnPI	CCDG	8 cut(s)	19, 43, 57, 62, 69, 214, 247, 366
Lsp1109I	GCAGC	1 cut(s)	311
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	2 cut(s)	96, 138
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	3 cut(s)	21, 328, 428
MboII	GAAGA	7 cut(s)	139, 142, 145, 147, 150, 165, 312
MhlI	GDGCHC	2 cut(s)	272, 379
MluCI	AATT	2 cut(s)	314, 340
MlyI	GAGTC	1 cut(s)	85
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	1 cut(s)	319
MseI	TTAA	2 cut(s)	66, 80
MslI	CAYNNNNRTG	1 cut(s)	435
MspCI	CTTAAG	1 cut(s)	65
MspI	CCGG	1 cut(s)	353
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	299
NlaIII	CATG	4 cut(s)	194, 385, 406, 440
NlaIV	GGNNCC	1 cut(s)	425
NmuCI	GTSAC	2 cut(s)	328, 428
PkrI	GCNGC	1 cut(s)	301
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
Ppu21I	YACGTR	1 cut(s)	289
Psp124BI	GAGCTC	1 cut(s)	379
PspEI	GGTNACC	1 cut(s)	328
PspFI	CCCAGC	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	425
PspPI	GGNCC	3 cut(s)	86, 167, 424
PstI	CTGCAG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	435
SacI	GAGCTC	1 cut(s)	379
SaqAI	TTAA	2 cut(s)	66, 80
SatI	GCNGC	1 cut(s)	300
Sau96I	GGNCC	3 cut(s)	86, 167, 424
SchI	GAGTC	1 cut(s)	85
SduI	GDGCHC	2 cut(s)	272, 379
SetI	ASST	5 cut(s)	66, 149, 291, 330, 379
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	1 cut(s)	13
SinI	GGWCC	2 cut(s)	86, 424
SmiMI	CAYNNNNRTG	1 cut(s)	435
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SnaBI	TACGTA	1 cut(s)	289
Sse9I	AATT	2 cut(s)	314, 340
SsiI	CCGC	2 cut(s)	333, 433
SspMI	CTAG	2 cut(s)	96, 138
SstI	GAGCTC	1 cut(s)	379
TaiI	ACGT	1 cut(s)	291
TasI	AATT	2 cut(s)	314, 340
TatI	WGTACW	1 cut(s)	3
Tru1I	TTAA	2 cut(s)	66, 80
Tru9I	TTAA	2 cut(s)	66, 80
TseFI	GTSAC	2 cut(s)	328, 428
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	2 cut(s)	328, 428
TspDTI	ATGAA	2 cut(s)	140, 150
TspGWI	ACGGA	2 cut(s)	258, 416
Vha464I	CTTAAG	1 cut(s)	65
VpaK11BI	GGWCC	2 cut(s)	86, 424
XspI	CTAG	2 cut(s)	96, 138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.