Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002024

Physical Location & Seq

Genomic Coordinates Reverse (-)

3564717 .. 3567415

Gene Structure 2699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00281210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGAGCACATGGCCATGGCAGTGATATTTTTCTTCTTCATCATTCTCTACTTGTTATGCAGGCTGTCCCTTTCTTGTTGGGTTTTTCCTTTCCTAACTCACCTGAGGCTCAAGAAAAATGGTTTGAGTGACCCATCTCCAAGTTTTCCATTAGGAAACCTCAGTGAGATGAAGAAGAAGACTAACACTGGAAGCTCTTCTTGCACTAATAGTATATCCCATGACATATACTCAACTCTATTCCCTCACTTTGCTCGGTGGAGGAATTCCCACGGCAAGGTGTTCGTATACTGGTTGGGAACCGAGCCATTTTTGTACATAGCAGATCCTGTTTTAGTGAAAAAGCTATCAACTGAGGTCTCTGCAAAGAACTGGGGCAAACCTACTGTGTTCAAACGCGACAGAGCTCCCATGTTTGGCAATGGCCTCGTTATGTCTGAAGGTGATGAATGGGCTCTTCACCGCCAAGTTATCACTCCTGCGTTTAACCCTACCAACTTGAAGGTACGTTTCAAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

173

Amino Acids

19.85

Weight (kDa)

9.78

Isoelectric Point (pI)

31.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	83 - 165	1.1e-07	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52400
fragaria_vesca	FvH4_7g29610 FvH4_7g29611 FvH4_7g29620
malus_domestica	MD01G1202600.v1.1 MD01G1202700.v1.1 MD01G1203000.v1.1 MD07G1272000.v1.1 MD07G1272300.v1.1 MD07G1272400.v1.1
prunus_persica	Prupe.2G295700_v2.0.a1 Prupe.2G295800_v2.0.a1
pyrus_communis	pycom01g21190 pycom01g21200 pycom07g24870 pycom07g24880
rosa_chinensis	RchiOBHm_Chr1g0377591 RchiOBHm_Chr1g0377601 RchiOBHm_Chr1g0377631
rosa_laevigata	RLG00000026513 RLG00000026514
rosa_multiflora	Rmu_co8133244.1_g000001 Rmu_sc0002832.1_g000010 Rmu_sc0002832.1_g000011 Rmu_sc0002832.1_g000012 Rmu_sc0012587.1_g000009 Rmu_sc0035943.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281180 Rroxscaffold_4G00281200 Rroxscaffold_4G00281210
rosa_rugosa	Rorug01G0403700 Rorug01G0403800
rosa_samantha	Rh1AG428800 Rh1AG428900 Rh1AG429000 Rh1AG429100 Rh1BG380200 Rh1BG380400 Rh1CG394400 Rh1CG394600 Rh1DG411400 Rh1DG411600
rosa_wichuraiana	Rw1G036970 Rw1G036980 Rw1G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	288
AccII	CGCG	1 cut(s)	399
AciI	CCGC	1 cut(s)	463
AclWI	GGATC	1 cut(s)	320
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	265
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	2 cut(s)	317, 507
AfiI	CCNNNNNNNGG	2 cut(s)	277, 416
AgsI	TTSAA	3 cut(s)	394, 502, 514
AluBI	AGCT	3 cut(s)	195, 346, 407
AluI	AGCT	3 cut(s)	195, 346, 407
Alw21I	GWGCWC	2 cut(s)	9, 409
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	1 cut(s)	320
AlwNI	CAGNNNCTG	1 cut(s)	329
AoxI	GGCC	2 cut(s)	12, 424
ApoI	RAATTY	1 cut(s)	265
Asp700I	GAANNNNTTC	1 cut(s)	196
AsuHPI	GGTGA	3 cut(s)	92, 452, 455
AxyI	CCTNAGG	1 cut(s)	104
BalI	TGGCCA	1 cut(s)	14
BanII	GRGCYC	2 cut(s)	409, 457
BbsI	GAAGAC	1 cut(s)	185
Bbv12I	GWGCWC	2 cut(s)	9, 409
BccI	CCATC	1 cut(s)	142
BceAI	ACGGC	1 cut(s)	289
BcgI	CGANNNNNNTGC	4 cut(s)	265, 299, 409, 443
BcoDI	GTCTC	1 cut(s)	364
BmiI	GGNNCC	1 cut(s)	301
BmrI	ACTGGG	1 cut(s)	382
BmuI	ACTGGG	1 cut(s)	382
BpiI	GAAGAC	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	364
BsaJI	CCNNGG	2 cut(s)	15, 271
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 416
Bse1I	ACTGG	3 cut(s)	193, 296, 377
Bse21I	CCTNAGG	1 cut(s)	104
Bse3DI	GCAATG	1 cut(s)	427
BseDI	CCNNGG	2 cut(s)	15, 271
BseLI	CCNNNNNNNGG	2 cut(s)	277, 416
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	3 cut(s)	95, 175, 345
BseNI	ACTGG	3 cut(s)	193, 296, 377
Bsh1236I	CGCG	1 cut(s)	399
BshFI	GGCC	2 cut(s)	14, 426
BsiHKAI	GWGCWC	2 cut(s)	9, 409
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	277, 416
BsmAI	GTCTC	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	2 cut(s)	14, 426
Bso31I	GGTCTC	1 cut(s)	364
Bsp1286I	GDGCHC	3 cut(s)	9, 409, 457
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	1 cut(s)	325
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	1 cut(s)	463
BspANI	GGCC	2 cut(s)	14, 426
BspCNI	CTCAG	3 cut(s)	96, 174, 346
BspFNI	CGCG	1 cut(s)	399
BspLI	GGNNCC	1 cut(s)	301
BspPI	GGATC	1 cut(s)	320
BspQI	GCTCTTC	2 cut(s)	202, 462
BspTNI	GGTCTC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	427
BsrGI	TGTACA	1 cut(s)	315
BsrI	ACTGG	3 cut(s)	193, 296, 377
BssECI	CCNNGG	2 cut(s)	15, 271
BssMI	GATC	1 cut(s)	325
BssNAI	GTATAC	1 cut(s)	289
BssT1I	CCWWGG	1 cut(s)	15
Bst1107I	GTATAC	1 cut(s)	289
Bst4CI	ACNGT	1 cut(s)	388
Bst6I	CTCTTC	2 cut(s)	202, 462
BstAUI	TGTACA	1 cut(s)	315
BstC8I	GCNNGC	1 cut(s)	62
BstDEI	CTNAG	3 cut(s)	104, 161, 354
BstDSI	CCRYGG	2 cut(s)	15, 271
BstFNI	CGCG	1 cut(s)	399
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	1 cut(s)	201
BstUI	CGCG	1 cut(s)	399
BstV2I	GAAGAC	1 cut(s)	185
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BstZ17I	GTATAC	1 cut(s)	289
Bsu36I	CCTNAGG	1 cut(s)	104
BsuRI	GGCC	2 cut(s)	14, 426
BtgI	CCRYGG	2 cut(s)	15, 271
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	3 cut(s)	27, 169, 186
Cac8I	GCNNGC	1 cut(s)	62
CaiI	CAGNNNCTG	1 cut(s)	329
Csp6I	GTAC	2 cut(s)	316, 506
CviAII	CATG	4 cut(s)	10, 16, 221, 412
CviJI	RGCY	9 cut(s)	14, 64, 109, 195, 307, 346, 407, 426, 455
CviKI_1	RGCY	9 cut(s)	14, 64, 109, 195, 307, 346, 407, 426, 455
CviQI	GTAC	2 cut(s)	316, 506
DdeI	CTNAG	3 cut(s)	104, 161, 354
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	2 cut(s)	202, 462
EarI	CTCTTC	2 cut(s)	202, 462
Ecl136II	GAGCTC	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	2 cut(s)	409, 457
Eco31I	GGTCTC	1 cut(s)	364
Eco53kI	GAGCTC	1 cut(s)	407
Eco57I	CTGAAG	1 cut(s)	459
Eco81I	CCTNAGG	1 cut(s)	104
EcoICRI	GAGCTC	1 cut(s)	407
EcoRI	GAATTC	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	2 cut(s)	409, 457
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	4 cut(s)	13, 19, 224, 415
FalI	AAGNNNNNCTT	2 cut(s)	184, 216
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	4 cut(s)	9, 15, 220, 411
FblI	GTMKAC	1 cut(s)	288
FriOI	GRGCYC	2 cut(s)	409, 457
HaeIII	GGCC	2 cut(s)	14, 426
Hin1II	CATG	4 cut(s)	13, 19, 224, 415
HphI	GGTGA	3 cut(s)	92, 452, 455
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	1 cut(s)	439
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	2 cut(s)	434, 496
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	1 cut(s)	508
HpyCH4V	TGCA	3 cut(s)	60, 204, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	201
HpyF3I	CTNAG	3 cut(s)	104, 161, 354
HpySE526I	ACGT	1 cut(s)	508
Hsp92II	CATG	4 cut(s)	13, 19, 224, 415
Kzo9I	GATC	1 cut(s)	325
LguI	GCTCTTC	2 cut(s)	202, 462
LmnI	GCTCC	2 cut(s)	4, 412
LpnPI	CCDG	7 cut(s)	46, 116, 174, 277, 342, 358, 492
MaeII	ACGT	1 cut(s)	508
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	7 cut(s)	25, 28, 184, 187, 189, 190, 449
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	3 cut(s)	9, 409, 457
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	1 cut(s)	265
MluNI	TGGCCA	1 cut(s)	14
MnlI	CCTC	6 cut(s)	99, 170, 255, 255, 349, 437
Mox20I	TGGCCA	1 cut(s)	14
MroXI	GAANNNNTTC	1 cut(s)	196
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	1 cut(s)	486
MslI	CAYNNNNRTG	2 cut(s)	14, 20
Msp20I	TGGCCA	1 cut(s)	14
MvnI	CGCG	1 cut(s)	399
MwoI	GCNNNNNNNGC	1 cut(s)	201
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	4 cut(s)	13, 19, 224, 415
NlaIV	GGNNCC	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	128
PciSI	GCTCTTC	2 cut(s)	202, 462
PdmI	GAANNNNTTC	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	409
PspN4I	GGNNCC	1 cut(s)	301
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	2 cut(s)	317, 507
RsaNI	GTAC	2 cut(s)	316, 506
RseI	CAYNNNNRTG	2 cut(s)	14, 20
SacI	GAGCTC	1 cut(s)	409
SapI	GCTCTTC	2 cut(s)	202, 462
SaqAI	TTAA	1 cut(s)	486
Sau3AI	GATC	1 cut(s)	325
SduI	GDGCHC	3 cut(s)	9, 409, 457
SmiMI	CAYNNNNRTG	2 cut(s)	14, 20
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	265
SsiI	CCGC	1 cut(s)	463
SstI	GAGCTC	1 cut(s)	409
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	1 cut(s)	511
TasI	AATT	1 cut(s)	265
TatI	WGTACW	1 cut(s)	315
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	3 cut(s)	27, 169, 193
TseFI	GTSAC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	3 cut(s)	28, 185, 462
TspRI	CASTG	3 cut(s)	27, 169, 193
XapI	RAATTY	1 cut(s)	265
XmiI	GTMKAC	1 cut(s)	288
XmnI	GAANNNNTTC	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.