Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002832.1

Orthogroup ID

OG0002024

Physical Location & Seq

Genomic Coordinates Forward (+)

37586 .. 38160

Gene Structure 575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002832.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atggcagtgatattcttcttcttcatcattctctacttattatgcaggctgtccctttcttgttgggtttttcctttcctaactcaccggaggctcaagaaaaatggtttgactggcccatctccaagttttccattaggaaacctcagtgagatgaagaagaagactaacactggaagctcttcttgcactaatagtatatcccatgacatatactcaactctattccctcattttgctcgttggaggaattcccacggcaaggtgttcgtatactgtttgggaacagagccatttttgtacatagcagatcctgttttagtgaaaaaactatcaactcaggtctctgcaaagaactggggcaaacctactgtgttcaaacgcgacagagctcccatgtttggcaatggcctcattatgtctgattgtctgaaggtgataaatgggctcttcaccgccaagttatcactcctgcgtttaaccctaccaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

164

Amino Acids

18.53

Weight (kDa)

10.08

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52400
fragaria_vesca	FvH4_7g29610 FvH4_7g29611 FvH4_7g29620
malus_domestica	MD01G1202600.v1.1 MD01G1202700.v1.1 MD01G1203000.v1.1 MD07G1272000.v1.1 MD07G1272300.v1.1 MD07G1272400.v1.1
prunus_persica	Prupe.2G295700_v2.0.a1 Prupe.2G295800_v2.0.a1
pyrus_communis	pycom01g21190 pycom01g21200 pycom07g24870 pycom07g24880
rosa_chinensis	RchiOBHm_Chr1g0377591 RchiOBHm_Chr1g0377601 RchiOBHm_Chr1g0377631
rosa_laevigata	RLG00000026513 RLG00000026514
rosa_multiflora	Rmu_co8133244.1_g000001 Rmu_sc0002832.1_g000010 Rmu_sc0002832.1_g000011 Rmu_sc0002832.1_g000012 Rmu_sc0012587.1_g000009 Rmu_sc0035943.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281180 Rroxscaffold_4G00281200 Rroxscaffold_4G00281210
rosa_rugosa	Rorug01G0403700 Rorug01G0403800
rosa_samantha	Rh1AG428800 Rh1AG428900 Rh1AG429000 Rh1AG429100 Rh1BG380200 Rh1BG380400 Rh1CG394400 Rh1CG394600 Rh1DG411400 Rh1DG411600
rosa_wichuraiana	Rw1G036970 Rw1G036980 Rw1G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	1 cut(s)	384
AciI	CCGC	1 cut(s)	456
AclWI	GGATC	1 cut(s)	305
AcsI	RAATTY	1 cut(s)	250
AcuI	CTGAAG	1 cut(s)	452
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	2 cut(s)	262, 401
AgsI	TTSAA	1 cut(s)	379
AluBI	AGCT	2 cut(s)	180, 392
AluI	AGCT	2 cut(s)	180, 392
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	1 cut(s)	349
AlwI	GGATC	1 cut(s)	305
AlwNI	CAGNNNCTG	1 cut(s)	314
AoxI	GGCC	2 cut(s)	115, 409
ApoI	RAATTY	1 cut(s)	250
Asp700I	GAANNNNTTC	1 cut(s)	181
AspS9I	GGNCC	1 cut(s)	116
AsuHPI	GGTGA	3 cut(s)	77, 445, 448
BanII	GRGCYC	2 cut(s)	394, 450
BbsI	GAAGAC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	394
BccI	CCATC	1 cut(s)	127
BceAI	ACGGC	1 cut(s)	274
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BcoDI	GTCTC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	116
BmrI	ACTGGG	1 cut(s)	367
BmuI	ACTGGG	1 cut(s)	367
BpiI	GAAGAC	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	80
BsaI	GGTCTC	1 cut(s)	349
BsaJI	CCNNGG	1 cut(s)	256
BsaWI	WCCGGW	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 401
Bse1I	ACTGG	3 cut(s)	118, 178, 362
Bse3DI	GCAATG	1 cut(s)	412
BseDI	CCNNGG	1 cut(s)	256
BseLI	CCNNNNNNNGG	2 cut(s)	262, 401
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	2 cut(s)	160, 353
BseNI	ACTGG	3 cut(s)	118, 178, 362
Bsh1236I	CGCG	1 cut(s)	384
BshFI	GGCC	2 cut(s)	117, 411
BsiHKAI	GWGCWC	1 cut(s)	394
BsiSI	CCGG	1 cut(s)	88
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	2 cut(s)	262, 401
BsmAI	GTCTC	1 cut(s)	349
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	2 cut(s)	117, 411
Bso31I	GGTCTC	1 cut(s)	349
Bsp1286I	GDGCHC	2 cut(s)	394, 450
Bsp1407I	TGTACA	1 cut(s)	300
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	1 cut(s)	456
BspANI	GGCC	2 cut(s)	117, 411
BspCNI	CTCAG	2 cut(s)	159, 352
BspFNI	CGCG	1 cut(s)	384
BspPI	GGATC	1 cut(s)	305
BspQI	GCTCTTC	2 cut(s)	187, 455
BspTNI	GGTCTC	1 cut(s)	349
BsrDI	GCAATG	1 cut(s)	412
BsrGI	TGTACA	1 cut(s)	300
BsrI	ACTGG	3 cut(s)	118, 178, 362
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	1 cut(s)	310
BssNAI	GTATAC	1 cut(s)	274
Bst1107I	GTATAC	1 cut(s)	274
Bst4CI	ACNGT	2 cut(s)	278, 373
Bst6I	CTCTTC	2 cut(s)	187, 455
BstAUI	TGTACA	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	47
BstDEI	CTNAG	2 cut(s)	146, 339
BstDSI	CCRYGG	1 cut(s)	256
BstFNI	CGCG	1 cut(s)	384
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstUI	CGCG	1 cut(s)	384
BstV2I	GAAGAC	1 cut(s)	170
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BstZ17I	GTATAC	1 cut(s)	274
BsuRI	GGCC	2 cut(s)	117, 411
BtgI	CCRYGG	1 cut(s)	256
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	3 cut(s)	12, 154, 171
Cac8I	GCNNGC	1 cut(s)	47
CaiI	CAGNNNCTG	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	2 cut(s)	206, 397
CviJI	RGCY	8 cut(s)	49, 94, 117, 180, 292, 392, 411, 448
CviKI_1	RGCY	8 cut(s)	49, 94, 117, 180, 292, 392, 411, 448
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	2 cut(s)	146, 339
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Eam1104I	CTCTTC	2 cut(s)	187, 455
EarI	CTCTTC	2 cut(s)	187, 455
Ecl136II	GAGCTC	1 cut(s)	392
Eco24I	GRGCYC	2 cut(s)	394, 450
Eco31I	GGTCTC	1 cut(s)	349
Eco53kI	GAGCTC	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	452
EcoICRI	GAGCTC	1 cut(s)	392
EcoRI	GAATTC	1 cut(s)	250
EcoT38I	GRGCYC	2 cut(s)	394, 450
FaeI	CATG	2 cut(s)	209, 400
FaiI	YATR	9 cut(s)	43, 200, 207, 212, 214, 274, 305, 398, 419
FalI	AAGNNNNNCTT	2 cut(s)	169, 201
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	2 cut(s)	205, 396
FblI	GTMKAC	1 cut(s)	273
FriOI	GRGCYC	2 cut(s)	394, 450
HaeIII	GGCC	2 cut(s)	117, 411
HapII	CCGG	1 cut(s)	88
Hin1II	CATG	2 cut(s)	209, 400
HpaII	CCGG	1 cut(s)	88
HphI	GGTGA	3 cut(s)	77, 445, 448
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	2 cut(s)	424, 432
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	1 cut(s)	274
HpyAV	CCTTC	1 cut(s)	427
HpyCH4III	ACNGT	2 cut(s)	278, 373
HpyCH4V	TGCA	3 cut(s)	45, 189, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpyF3I	CTNAG	2 cut(s)	146, 339
Hsp92II	CATG	2 cut(s)	209, 400
Kzo9I	GATC	1 cut(s)	310
LguI	GCTCTTC	2 cut(s)	187, 455
LmnI	GCTCC	1 cut(s)	397
LpnPI	CCDG	8 cut(s)	31, 99, 101, 159, 326, 327, 343, 485
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	8 cut(s)	7, 10, 13, 169, 172, 174, 175, 442
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	2 cut(s)	394, 450
MluCI	AATT	1 cut(s)	250
MmeI	TCCRAC	1 cut(s)	224
MnlI	CCTC	5 cut(s)	84, 155, 240, 240, 422
MroXI	GAANNNNTTC	1 cut(s)	181
MseI	TTAA	1 cut(s)	479
MspI	CCGG	1 cut(s)	88
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	1 cut(s)	186
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	2 cut(s)	209, 400
PciSI	GCTCTTC	2 cut(s)	187, 455
PdmI	GAANNNNTTC	1 cut(s)	181
Psp124BI	GAGCTC	1 cut(s)	394
PspPI	GGNCC	1 cut(s)	116
PstNI	CAGNNNCTG	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
SacI	GAGCTC	1 cut(s)	394
SapI	GCTCTTC	2 cut(s)	187, 455
SaqAI	TTAA	1 cut(s)	479
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	1 cut(s)	116
SduI	GDGCHC	2 cut(s)	394, 450
SetI	ASST	7 cut(s)	147, 182, 267, 345, 370, 394, 438
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	250
SsiI	CCGC	1 cut(s)	456
SstI	GAGCTC	1 cut(s)	394
TaaI	ACNGT	2 cut(s)	278, 373
TasI	AATT	1 cut(s)	250
TatI	WGTACW	1 cut(s)	300
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TscAI	CASTG	3 cut(s)	12, 154, 178
TspDTI	ATGAA	2 cut(s)	13, 170
TspRI	CASTG	3 cut(s)	12, 154, 178
XapI	RAATTY	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	273
XmnI	GAANNNNTTC	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.