Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035943.1

Orthogroup ID

OG0002024

Physical Location & Seq

Genomic Coordinates Forward (+)

1915 .. 3318

Gene Structure 1404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035943.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atggagttcatcgggttcttaacaatggcagtcttcatcgtcgtcgttctgtacttactctgcagattgttactttcttgctgggtttttcctgtcctgacttacaggaagcttaagaaaaatgggttaactggtccgactcctagttttcctttgggaaatcttagcgagatgaagaagaagactagccaaagctctacttcttcttcatttgggccatcttcaaatagtataacccatgacatacactcaactctctttccctactttgctcgctggcagaaagcctacggaaaaatgttcgtttactggttgggcacagagccattcctatacgtagcagatgcagccttactgaaaaaattgtcttcggaggtcaccgcaaagaattggggcaaaccggctgtgtttagacgcgatagagctcccatgtttggtaatggccttgtcatgtccgaaggggatgattgggtccgtcaccgccatgttatcactccagcatttaatcctactaacttgaaggcaatggctagtttgatggtggagaccgcaacaacaatgctagacaactgggctactcagatcaacacttccggcatccaagaaattgacgttgaggattcaatcacggcaacagctggggagatcatcgccaagacgagcttcggtattagtcaccacagtggtagcctagtgttcgaaaaattaagagcactacaaatgaccctcttcaagacgacccgttttgtgggagttccttttggcaaattcatatatcccatgaaaaccctcgaggcaggaagactcggggaagaaatcaaccagctctttttatcgatcatcgctgcacgaaagaaatcgattagatcagaatccccgcaacacgaccttctcgggatgctactcaaagagagcgataaaccgggcaacttctcgaagtctctgaccacacaggaactggtggacgagtgcaagacatttttcttcggcggtcacgagacaacggcattggcgatcacatggacgatgctacttctagctacccatacagattggcaagaacaattgagggca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

358

Amino Acids

40.12

Weight (kDa)

9.19

Isoelectric Point (pI)

33.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52400
fragaria_vesca	FvH4_7g29610 FvH4_7g29611 FvH4_7g29620
malus_domestica	MD01G1202600.v1.1 MD01G1202700.v1.1 MD01G1203000.v1.1 MD07G1272000.v1.1 MD07G1272300.v1.1 MD07G1272400.v1.1
prunus_persica	Prupe.2G295700_v2.0.a1 Prupe.2G295800_v2.0.a1
pyrus_communis	pycom01g21190 pycom01g21200 pycom07g24870 pycom07g24880
rosa_chinensis	RchiOBHm_Chr1g0377591 RchiOBHm_Chr1g0377601 RchiOBHm_Chr1g0377631
rosa_laevigata	RLG00000026513 RLG00000026514
rosa_multiflora	Rmu_co8133244.1_g000001 Rmu_sc0002832.1_g000010 Rmu_sc0002832.1_g000011 Rmu_sc0002832.1_g000012 Rmu_sc0012587.1_g000009 Rmu_sc0035943.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281180 Rroxscaffold_4G00281200 Rroxscaffold_4G00281210
rosa_rugosa	Rorug01G0403700 Rorug01G0403800
rosa_samantha	Rh1AG428800 Rh1AG428900 Rh1AG429000 Rh1AG429100 Rh1BG380200 Rh1BG380400 Rh1CG394400 Rh1CG394600 Rh1DG411400 Rh1DG411600
rosa_wichuraiana	Rw1G036970 Rw1G036980 Rw1G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	791
AccII	CGCG	1 cut(s)	417
AciI	CCGC	5 cut(s)	381, 481, 549, 878, 990
AcsI	RAATTY	1 cut(s)	767
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	434, 748
AflII	CTTAAG	1 cut(s)	113
AgsI	TTSAA	4 cut(s)	225, 520, 624, 733
AjuI	GAANNNNNNNTTGG	2 cut(s)	647, 679
AleI	CACNNNNGTG	1 cut(s)	681
AluBI	AGCT	7 cut(s)	112, 195, 425, 638, 663, 826, 1040
AluI	AGCT	7 cut(s)	112, 195, 425, 638, 663, 826, 1040
Alw21I	GWGCWC	2 cut(s)	427, 715
Alw26I	GTCTC	3 cut(s)	539, 945, 992
AlwNI	CAGNNNCTG	1 cut(s)	958
Ama87I	CYCGRG	3 cut(s)	791, 806, 893
AoxI	GGCC	2 cut(s)	215, 442
ApeKI	GCWGC	2 cut(s)	347, 845
ApoI	RAATTY	1 cut(s)	767
AspS9I	GGNCC	3 cut(s)	134, 215, 472
AsuC2I	CCSGG	1 cut(s)	924
AsuHPI	GGTGA	3 cut(s)	370, 470, 668
AsuII	TTCGAA	1 cut(s)	699
AvaI	CYCGRG	3 cut(s)	791, 806, 893
AvaII	GGWCC	2 cut(s)	134, 472
BaeGI	GKGCMC	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	427
BauI	CACGAG	1 cut(s)	995
BbsI	GAAGAC	4 cut(s)	25, 188, 360, 808
Bbv12I	GWGCWC	2 cut(s)	427, 715
BbvI	GCAGC	2 cut(s)	359, 832
BccI	CCATC	2 cut(s)	226, 532
BceAI	ACGGC	2 cut(s)	645, 1020
BcnI	CCSGG	1 cut(s)	924
BcoDI	GTCTC	3 cut(s)	539, 945, 992
BfaI	CTAG	6 cut(s)	144, 186, 531, 563, 692, 1037
BfmI	CTRYAG	1 cut(s)	61
BfrI	CTTAAG	1 cut(s)	113
BisI	GCNGC	2 cut(s)	348, 846
BlsI	GCNGC	2 cut(s)	349, 847
Bme1390I	CCNGG	1 cut(s)	924
Bme18I	GGWCC	2 cut(s)	134, 472
BmeT110I	CYCGRG	3 cut(s)	791, 806, 893
BmgT120I	GGNCC	3 cut(s)	134, 215, 472
BmiI	GGNNCC	1 cut(s)	473
BmrFI	CCNGG	1 cut(s)	924
BmrI	ACTGGG	1 cut(s)	580
BmsI	GCATC	4 cut(s)	334, 606, 888, 1017
BmuI	ACTGGG	1 cut(s)	580
BpiI	GAAGAC	4 cut(s)	25, 188, 360, 808
BpmI	CTGGAG	1 cut(s)	480
Bpu14I	TTCGAA	1 cut(s)	699
BpuMI	CCSGG	1 cut(s)	924
Bsa29I	ATCGAT	2 cut(s)	836, 860
BsaAI	YACGTR	1 cut(s)	337
BsaBI	GATNNNNATC	1 cut(s)	871
BsaI	GGTCTC	1 cut(s)	539
Bsc4I	CCNNNNNNNGG	2 cut(s)	434, 748
Bse118I	RCCGGY	1 cut(s)	400
Bse1I	ACTGG	4 cut(s)	136, 314, 575, 963
Bse3DI	GCAATG	1 cut(s)	531
Bse8I	GATNNNNATC	1 cut(s)	871
BseCI	ATCGAT	2 cut(s)	836, 860
BseGI	GGATG	3 cut(s)	469, 597, 903
BseJI	GATNNNNATC	1 cut(s)	871
BseLI	CCNNNNNNNGG	2 cut(s)	434, 748
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	1 cut(s)	593
BseNI	ACTGG	4 cut(s)	136, 314, 575, 963
BseSI	GKGCMC	1 cut(s)	320
BseXI	GCAGC	2 cut(s)	359, 832
BseYI	CCCAGC	2 cut(s)	81, 638
BsgI	GTGCAG	1 cut(s)	831
Bsh1236I	CGCG	1 cut(s)	417
BshFI	GGCC	2 cut(s)	217, 444
BshVI	ATCGAT	2 cut(s)	836, 860
BsiHKAI	GWGCWC	2 cut(s)	427, 715
BsiHKCI	CYCGRG	3 cut(s)	791, 806, 893
BsiSI	CCGG	3 cut(s)	401, 594, 923
BslI	CCNNNNNNNGG	2 cut(s)	434, 748
BsmAI	GTCTC	3 cut(s)	539, 945, 992
BsnI	GGCC	2 cut(s)	217, 444
Bso31I	GGTCTC	1 cut(s)	539
BsoBI	CYCGRG	3 cut(s)	791, 806, 893
Bsp119I	TTCGAA	1 cut(s)	699
Bsp1286I	GDGCHC	3 cut(s)	320, 427, 715
Bsp143I	GATC	5 cut(s)	582, 645, 837, 866, 1014
BspACI	CCGC	5 cut(s)	381, 481, 549, 878, 990
BspANI	GGCC	2 cut(s)	217, 444
BspCNI	CTCAG	1 cut(s)	592
BspDI	ATCGAT	2 cut(s)	836, 860
BspFNI	CGCG	1 cut(s)	417
BspLI	GGNNCC	1 cut(s)	473
BspMAI	CTGCAG	1 cut(s)	65
BspT104I	TTCGAA	1 cut(s)	699
BspTI	CTTAAG	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	539
BsrDI	GCAATG	1 cut(s)	531
BsrFI	RCCGGY	1 cut(s)	400
BsrI	ACTGG	4 cut(s)	136, 314, 575, 963
BssAI	RCCGGY	1 cut(s)	400
BssMI	GATC	5 cut(s)	582, 645, 837, 866, 1014
BssSI	CACGAG	1 cut(s)	995
Bst2BI	CACGAG	1 cut(s)	995
Bst4CI	ACNGT	1 cut(s)	683
Bst6I	CTCTTC	1 cut(s)	734
BstAFI	CTTAAG	1 cut(s)	113
BstBAI	YACGTR	1 cut(s)	337
BstBI	TTCGAA	1 cut(s)	699
BstC8I	GCNNGC	2 cut(s)	274, 278
BstDEI	CTNAG	2 cut(s)	164, 579
BstEII	GGTNACC	1 cut(s)	376
BstF5I	GGATG	3 cut(s)	469, 597, 903
BstFNI	CGCG	1 cut(s)	417
BstKTI	GATC	5 cut(s)	585, 648, 840, 869, 1017
BstMAI	GTCTC	3 cut(s)	539, 945, 992
BstMBI	GATC	5 cut(s)	582, 645, 837, 866, 1014
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstPI	GGTNACC	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	922
BstSFI	CTRYAG	1 cut(s)	61
BstSLI	GKGCMC	1 cut(s)	320
BstSNI	TACGTA	1 cut(s)	337
BstUI	CGCG	1 cut(s)	417
BstV1I	GCAGC	2 cut(s)	359, 832
BstV2I	GAAGAC	4 cut(s)	25, 188, 360, 808
Bsu15I	ATCGAT	2 cut(s)	836, 860
BsuRI	GGCC	2 cut(s)	217, 444
BsuTUI	ATCGAT	2 cut(s)	836, 860
BtgZI	GCGATG	2 cut(s)	634, 826
BtsCI	GGATG	3 cut(s)	469, 597, 903
BtsIMutI	CAGTG	1 cut(s)	688
Cac8I	GCNNGC	2 cut(s)	274, 278
CaiI	CAGNNNCTG	1 cut(s)	958
Cfr10I	RCCGGY	1 cut(s)	400
Cfr13I	GGNCC	3 cut(s)	134, 215, 472
ClaI	ATCGAT	2 cut(s)	836, 860
CseI	GACGC	1 cut(s)	423
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	6 cut(s)	239, 430, 451, 485, 781, 1020
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	2 cut(s)	164, 579
DpnI	GATC	5 cut(s)	584, 647, 839, 868, 1016
DpnII	GATC	5 cut(s)	582, 645, 837, 866, 1014
Eam1104I	CTCTTC	1 cut(s)	734
EarI	CTCTTC	1 cut(s)	734
Ecl136II	GAGCTC	1 cut(s)	425
Eco105I	TACGTA	1 cut(s)	337
Eco24I	GRGCYC	1 cut(s)	427
Eco31I	GGTCTC	1 cut(s)	539
Eco47I	GGWCC	2 cut(s)	134, 472
Eco53kI	GAGCTC	1 cut(s)	425
Eco88I	CYCGRG	3 cut(s)	791, 806, 893
Eco91I	GGTNACC	1 cut(s)	376
EcoICRI	GAGCTC	1 cut(s)	425
EcoO65I	GGTNACC	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	427
FaeI	CATG	6 cut(s)	242, 433, 454, 488, 784, 1023
FalI	AAGNNNNNCTT	4 cut(s)	184, 216, 647, 679
FatI	CATG	6 cut(s)	238, 429, 450, 484, 780, 1019
FauI	CCCGC	1 cut(s)	885
Fnu4HI	GCNGC	2 cut(s)	348, 846
FokI	GGATG	3 cut(s)	476, 584, 910
FriOI	GRGCYC	1 cut(s)	427
Fsp4HI	GCNGC	2 cut(s)	348, 846
FspBI	CTAG	6 cut(s)	144, 186, 531, 563, 692, 1037
GluI	GCNGC	2 cut(s)	348, 846
GsaI	CCCAGC	2 cut(s)	85, 642
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	2 cut(s)	217, 444
HapII	CCGG	3 cut(s)	401, 594, 923
HgaI	GACGC	1 cut(s)	423
Hin1II	CATG	6 cut(s)	242, 433, 454, 488, 784, 1023
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	4 cut(s)	139, 620, 804, 872
HpaI	GTTAAC	1 cut(s)	129
HpaII	CCGG	3 cut(s)	401, 594, 923
HphI	GGTGA	3 cut(s)	370, 470, 668
Hpy166II	GTNNAC	3 cut(s)	129, 307, 964
Hpy188I	TCNGA	6 cut(s)	138, 373, 457, 582, 871, 945
Hpy188III	TCNNGA	5 cut(s)	97, 733, 895, 934, 995
Hpy8I	GTNNAC	3 cut(s)	129, 307, 964
Hpy99I	CGWCG	2 cut(s)	44, 47
HpyAV	CCTTC	3 cut(s)	452, 514, 899
HpyCH4III	ACNGT	1 cut(s)	683
HpyCH4IV	ACGT	2 cut(s)	336, 612
HpyCH4V	TGCA	4 cut(s)	63, 347, 848, 972
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	2 cut(s)	164, 579
HpySE526I	ACGT	2 cut(s)	336, 612
Hsp92II	CATG	6 cut(s)	242, 433, 454, 488, 784, 1023
KspAI	GTTAAC	1 cut(s)	129
Kzo9I	GATC	5 cut(s)	582, 645, 837, 866, 1014
LmnI	GCTCC	1 cut(s)	430
Lsp1109I	GCAGC	2 cut(s)	359, 832
LweI	GCATC	4 cut(s)	334, 606, 888, 1017
MaeI	CTAG	6 cut(s)	144, 186, 531, 563, 692, 1037
MaeII	ACGT	2 cut(s)	336, 612
MaeIII	GTNAC	5 cut(s)	69, 376, 476, 674, 992
MalI	GATC	5 cut(s)	584, 647, 839, 868, 1016
MboI	GATC	5 cut(s)	582, 645, 837, 866, 1014
MfeI	CAATTG	1 cut(s)	1064
MhlI	GDGCHC	3 cut(s)	320, 427, 715
MluCI	AATT	6 cut(s)	362, 388, 606, 704, 767, 1064
MlyI	GAGTC	2 cut(s)	133, 798
MmeI	TCCRAC	1 cut(s)	161
MnlI	CCTC	6 cut(s)	367, 610, 737, 787, 800, 1062
MseI	TTAA	5 cut(s)	20, 114, 128, 504, 707
MslI	CAYNNNNRTG	2 cut(s)	483, 681
MspA1I	CMGCKG	1 cut(s)	638
MspCI	CTTAAG	1 cut(s)	113
MspI	CCGG	3 cut(s)	401, 594, 923
MspR9I	CCNGG	1 cut(s)	924
MunI	CAATTG	1 cut(s)	1064
MvnI	CGCG	1 cut(s)	417
MwoI	GCNNNNNNNGC	1 cut(s)	347
NciI	CCSGG	1 cut(s)	924
NdeII	GATC	5 cut(s)	582, 645, 837, 866, 1014
NlaIII	CATG	6 cut(s)	242, 433, 454, 488, 784, 1023
NlaIV	GGNNCC	1 cut(s)	473
NmuCI	GTSAC	4 cut(s)	376, 476, 674, 992
NspV	TTCGAA	1 cut(s)	699
OliI	CACNNNNGTG	1 cut(s)	681
PaeR7I	CTCGAG	1 cut(s)	791
PcsI	WCGNNNNNNNCGW	2 cut(s)	993, 1010
PfeI	GAWTC	2 cut(s)	620, 872
PkrI	GCNGC	2 cut(s)	349, 847
PleI	GAGTC	2 cut(s)	133, 798
PpsI	GAGTC	2 cut(s)	133, 798
Ppu21I	YACGTR	1 cut(s)	337
Psp124BI	GAGCTC	1 cut(s)	427
PspEI	GGTNACC	1 cut(s)	376
PspFI	CCCAGC	2 cut(s)	81, 638
PspN4I	GGNNCC	1 cut(s)	473
PspPI	GGNCC	3 cut(s)	134, 215, 472
PspXI	VCTCGAGB	1 cut(s)	791
PstI	CTGCAG	1 cut(s)	65
PstNI	CAGNNNCTG	1 cut(s)	958
PvuII	CAGCTG	1 cut(s)	638
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	2 cut(s)	483, 681
SacI	GAGCTC	1 cut(s)	427
SaqAI	TTAA	5 cut(s)	20, 114, 128, 504, 707
SatI	GCNGC	2 cut(s)	348, 846
Sau3AI	GATC	5 cut(s)	582, 645, 837, 866, 1014
Sau96I	GGNCC	3 cut(s)	134, 215, 472
SchI	GAGTC	2 cut(s)	133, 798
ScrFI	CCNGG	1 cut(s)	924
SduI	GDGCHC	3 cut(s)	320, 427, 715
SfaNI	GCATC	4 cut(s)	334, 606, 888, 1017
SfcI	CTRYAG	1 cut(s)	61
Sfr274I	CTCGAG	1 cut(s)	791
SfuI	TTCGAA	1 cut(s)	699
SinI	GGWCC	2 cut(s)	134, 472
SlaI	CTCGAG	1 cut(s)	791
SmiMI	CAYNNNNRTG	2 cut(s)	483, 681
SmlI	CTYRAG	2 cut(s)	113, 791
SmoI	CTYRAG	2 cut(s)	113, 791
SnaBI	TACGTA	1 cut(s)	337
Sse9I	AATT	6 cut(s)	362, 388, 606, 704, 767, 1064
SsiI	CCGC	5 cut(s)	381, 481, 549, 878, 990
SspMI	CTAG	6 cut(s)	144, 186, 531, 563, 692, 1037
SstI	GAGCTC	1 cut(s)	427
StyD4I	CCNGG	1 cut(s)	922
TaaI	ACNGT	1 cut(s)	683
TaiI	ACGT	2 cut(s)	339, 615
TaqI	TCGA	5 cut(s)	699, 792, 836, 860, 935
TasI	AATT	6 cut(s)	362, 388, 606, 704, 767, 1064
TatI	WGTACW	1 cut(s)	51
TfiI	GAWTC	2 cut(s)	620, 872
Tru1I	TTAA	5 cut(s)	20, 114, 128, 504, 707
Tru9I	TTAA	5 cut(s)	20, 114, 128, 504, 707
TscAI	CASTG	1 cut(s)	688
TseFI	GTSAC	4 cut(s)	376, 476, 674, 992
TseI	GCWGC	2 cut(s)	347, 845
Tsp45I	GTSAC	4 cut(s)	376, 476, 674, 992
TspDTI	ATGAA	5 cut(s)	25, 188, 198, 760, 797
TspGWI	ACGGA	2 cut(s)	306, 464
TspRI	CASTG	1 cut(s)	688
Vha464I	CTTAAG	1 cut(s)	113
VpaK11BI	GGWCC	2 cut(s)	134, 472
XapI	RAATTY	1 cut(s)	767
XcmI	CCANNNNNNNNNTGG	1 cut(s)	955
XhoI	CTCGAG	1 cut(s)	791
XspI	CTAG	6 cut(s)	144, 186, 531, 563, 692, 1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.