Rw1G036970

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
64730627 .. 64733189
2563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G036970.1

Sequence Viewer

Length: 1296 bp
ATGGAGCACATGGCCATGGCAGTGATATTCTTCTTCTTCATCATTCTCTACTTATTATGCAGGCTGTCCCTTTCTTGTTGGGTTTTTCCTTTCCTAACTCACCGGAGGCTCAAGAAAAATGGTTTGACTGGCCCATCTCCAAGTTTTCCATTAGGAAACCTCAGTGAGATGAAGAAGAAGACTAACACTGGAAGCTCTTCTTGCACTAATAGTATATCCCATGACATATACTCAACTCTATTCCCTCACTTTGCTCGTTGGAGGAATTCCCACGGCAAGGTGTTCGTATACTGGTTGGGAACAGAGCCATTTTTGTACATAGCAGATCCTGTTTTAGTGAAAAAACTATCAACTCAGGTCTCTGCAAAGAACTGGGGCAAACCTACTGTGTTCAAACGCGACAGAGCTCCCATGTTTGGCAATGGCCTCATTATGTCTGAAGGTGATAAATGGGCTCTTCACCGCCAAGTTATCACTCCTGCGTTTAACCCTACCAACTTGAAGGCAATGGTGAGTTTGATGGTGGAGACTACCAGAACAATGCTAGACACCTGGACTACCCAGCTCAGAAATTCCGGCACTCGAGAAATTGATGTAGAGAAATCAATCAGAGAAACAGCAGGGGAGATCATCGCCAAGGCCAGCTTTGGCATTAGTTACCAAAGTGATCACCATGTGTTTGAAAAATTTAGGGCCCTGCAAATCAGCCTCTTCCAAACAAAACGCCTTTTGGGAGTTCCATTTGGGAAATTCTTGTACCTCAAGCAAGCCCTCGAGGCCAGCAGACTTGGAAAAGAAATTAACCAACTGTTCTCATCGATCATAGCTGCACGAAAGAAAGCCATTAGGTCAGGATCGTCTACTATGCAGCACGACTTGCTTGGGTTATTGCTTAACCAGAGTGATCAACAAGGCAGCTTCAGAAAGGCTTTGACAACACAGCAGTTGGTGGATGAGTGCAAGACATTTTTCTTTTCAGGCCATGAGACATCGGCATTGTCTATCATATGGACGATGCTCCTTCTGGCCACGAATCCGGAGTGGCAAAATGAACTGAGGGAAGAGATTAGGGAGGTGGTAGGAGATAATAAAGAACTTCATTTCAACATGCTTGCTGGACTAAAGAAGGTAAGGAATTATGAGGTCTCATTCGGTACATTAATGTATCAAACTATCAATACGTACCAACTTCATATAGTGGTAGATCGGTCGATCATTGATCTACCATTCCATATAACTAATAGTCTACTATTTTCAACGCATTACAATAATTGTTTGATGGTTTGTTGTTTTTGA

Protein Analysis

431

Amino Acids

49.3

Weight (kDa)

9.49

Isoelectric Point (pI)

32.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 83 - 374 1.3e-40 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 773
AccI GTMKAC 3 cut(s) 288, 860, 1246
AccII CGCG 1 cut(s) 399
AccIII TCCGGA 1 cut(s) 1036
AciI CCGC 1 cut(s) 463
AclWI GGATC 2 cut(s) 320, 862
AcoI YGGCCR 2 cut(s) 12, 1026
AcsI RAATTY 4 cut(s) 265, 571, 686, 749
AcuI CTGAAG 2 cut(s) 459, 904
AdeI CACNNNGTG 1 cut(s) 676
AfaI GTAC 4 cut(s) 317, 758, 1156, 1184
AfiI CCNNNNNNNGG 2 cut(s) 277, 416
AgsI TTSAA 5 cut(s) 394, 502, 683, 1105, 1257
AjnI CCWGG 1 cut(s) 551
AluBI AGCT 6 cut(s) 195, 407, 565, 645, 827, 918
AluI AGCT 6 cut(s) 195, 407, 565, 645, 827, 918
Alw21I GWGCWC 2 cut(s) 9, 409
Alw26I GTCTC 4 cut(s) 364, 521, 980, 1150
AlwI GGATC 2 cut(s) 320, 862
AlwNI CAGNNNCTG 1 cut(s) 329
Ama87I CYCGRG 2 cut(s) 582, 773
Aor13HI TCCGGA 1 cut(s) 1036
AoxI GGCC 8 cut(s) 12, 130, 424, 639, 693, 777, 979, 1026
ApaI GGGCCC 1 cut(s) 697
ApeKI GCWGC 3 cut(s) 827, 868, 915
ApoI RAATTY 4 cut(s) 265, 571, 686, 749
AseI ATTAAT 1 cut(s) 1160
Asp700I GAANNNNTTC 1 cut(s) 196
AspS9I GGNCC 3 cut(s) 131, 693, 694
AsuHPI GGTGA 5 cut(s) 92, 452, 455, 523, 662
AvaI CYCGRG 2 cut(s) 582, 773
BaeGI GKGCMC 1 cut(s) 697
BalI TGGCCA 2 cut(s) 14, 1028
BanII GRGCYC 3 cut(s) 409, 457, 697
BbsI GAAGAC 1 cut(s) 185
Bbv12I GWGCWC 2 cut(s) 9, 409
BbvI GCAGC 3 cut(s) 814, 880, 927
BccI CCATC 3 cut(s) 142, 514, 1273
BceAI ACGGC 1 cut(s) 289
BcgI CGANNNNNNTGC 2 cut(s) 265, 299
BciT130I CCWGG 1 cut(s) 553
BclI TGATCA 2 cut(s) 667, 904
BcoDI GTCTC 4 cut(s) 364, 521, 980, 1150
BfaI CTAG 1 cut(s) 545
BglI GCCNNNNNGGC 1 cut(s) 776
BisI GCNGC 3 cut(s) 828, 869, 916
BlsI GCNGC 3 cut(s) 829, 870, 917
Bme1390I CCNGG 1 cut(s) 553
BmeT110I CYCGRG 2 cut(s) 582, 773
BmgT120I GGNCC 3 cut(s) 131, 693, 694
BmiI GGNNCC 1 cut(s) 695
BmrFI CCNGG 1 cut(s) 553
BmrI ACTGGG 1 cut(s) 382
BmsI GCATC 1 cut(s) 1005
BmuI ACTGGG 1 cut(s) 382
BpiI GAAGAC 1 cut(s) 185
BpuEI CTTGAG 2 cut(s) 95, 746
Bsa29I ATCGAT 1 cut(s) 818
BsaAI YACGTR 1 cut(s) 1182
BsaI GGTCTC 2 cut(s) 364, 1150
BsaJI CCNNGG 3 cut(s) 15, 271, 636
BsaWI WCCGGW 2 cut(s) 102, 1036
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 416
Bse1I ACTGG 4 cut(s) 133, 193, 296, 377
Bse3DI GCAATG 2 cut(s) 427, 513
BseAI TCCGGA 1 cut(s) 1036
BseBI CCWGG 1 cut(s) 553
BseCI ATCGAT 1 cut(s) 818
BseDI CCNNGG 3 cut(s) 15, 271, 636
BseGI GGATG 1 cut(s) 958
BseLI CCNNNNNNNGG 2 cut(s) 277, 416
BseMI GCAATG 2 cut(s) 427, 513
BseMII CTCAG 4 cut(s) 175, 368, 580, 1046
BseNI ACTGG 4 cut(s) 133, 193, 296, 377
BseSI GKGCMC 1 cut(s) 697
BseXI GCAGC 3 cut(s) 814, 880, 927
BseYI CCCAGC 1 cut(s) 561
BsgI GTGCAG 1 cut(s) 813
Bsh1236I CGCG 1 cut(s) 399
Bsh1285I CGRYCG 1 cut(s) 1211
BshFI GGCC 8 cut(s) 14, 132, 426, 641, 695, 779, 981, 1028
BshVI ATCGAT 1 cut(s) 818
BsiEI CGRYCG 1 cut(s) 1211
BsiHKAI GWGCWC 2 cut(s) 9, 409
BsiHKCI CYCGRG 2 cut(s) 582, 773
BsiSI CCGG 3 cut(s) 103, 576, 1037
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 2 cut(s) 277, 416
BsmAI GTCTC 4 cut(s) 364, 521, 980, 1150
BsmFI GGGAC 1 cut(s) 52
BsnI GGCC 8 cut(s) 14, 132, 426, 641, 695, 779, 981, 1028
Bso31I GGTCTC 2 cut(s) 364, 1150
BsoBI CYCGRG 2 cut(s) 582, 773
Bsp120I GGGCCC 1 cut(s) 693
Bsp1286I GDGCHC 4 cut(s) 9, 409, 457, 697
Bsp13I TCCGGA 1 cut(s) 1036
Bsp1407I TGTACA 1 cut(s) 315
Bsp143I GATC 9 cut(s) 325, 627, 667, 819, 854, 904, 1204, 1212, 1219
Bsp19I CCATGG 1 cut(s) 15
BspACI CCGC 1 cut(s) 463
BspANI GGCC 8 cut(s) 14, 132, 426, 641, 695, 779, 981, 1028
BspCNI CTCAG 4 cut(s) 174, 367, 579, 1047
BspDI ATCGAT 1 cut(s) 818
BspEI TCCGGA 1 cut(s) 1036
BspFNI CGCG 1 cut(s) 399
BspLI GGNNCC 1 cut(s) 695
BspPI GGATC 2 cut(s) 320, 862
BspQI GCTCTTC 2 cut(s) 202, 462
BspTNI GGTCTC 2 cut(s) 364, 1150
BsrDI GCAATG 2 cut(s) 427, 513
BsrGI TGTACA 1 cut(s) 315
BsrI ACTGG 4 cut(s) 133, 193, 296, 377
BssECI CCNNGG 3 cut(s) 15, 271, 636
BssMI GATC 9 cut(s) 325, 627, 667, 819, 854, 904, 1204, 1212, 1219
BssNAI GTATAC 1 cut(s) 289
BssT1I CCWWGG 2 cut(s) 15, 636
Bst1107I GTATAC 1 cut(s) 289
Bst2UI CCWGG 1 cut(s) 553
Bst4CI ACNGT 2 cut(s) 388, 810
Bst6I CTCTTC 4 cut(s) 202, 462, 716, 1056
BstAPI GCANNNNNTGC 1 cut(s) 877
BstAUI TGTACA 1 cut(s) 315
BstBAI YACGTR 1 cut(s) 1182
BstC8I GCNNGC 5 cut(s) 62, 643, 768, 781, 1113
BstDEI CTNAG 4 cut(s) 161, 354, 566, 1055
BstDSI CCRYGG 2 cut(s) 15, 271
BstF5I GGATG 1 cut(s) 958
BstFNI CGCG 1 cut(s) 399
BstKTI GATC 9 cut(s) 328, 630, 670, 822, 857, 907, 1207, 1215, 1222
BstMAI GTCTC 4 cut(s) 364, 521, 980, 1150
BstMBI GATC 9 cut(s) 325, 627, 667, 819, 854, 904, 1204, 1212, 1219
BstMCI CGRYCG 1 cut(s) 1211
BstMWI GCNNNNNNNGC 3 cut(s) 201, 776, 877
BstNI CCWGG 1 cut(s) 553
BstNSI RCATGY 1 cut(s) 1111
BstSCI CCNGG 1 cut(s) 551
BstSLI GKGCMC 1 cut(s) 697
BstSNI TACGTA 1 cut(s) 1182
BstUI CGCG 1 cut(s) 399
BstV1I GCAGC 3 cut(s) 814, 880, 927
BstV2I GAAGAC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BstZ17I GTATAC 1 cut(s) 289
Bsu15I ATCGAT 1 cut(s) 818
BsuRI GGCC 8 cut(s) 14, 132, 426, 641, 695, 779, 981, 1028
BsuTUI ATCGAT 1 cut(s) 818
BtgI CCRYGG 2 cut(s) 15, 271
BtgZI GCGATG 1 cut(s) 616
BtsCI GGATG 1 cut(s) 958
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 3 cut(s) 27, 169, 186
Cac8I GCNNGC 5 cut(s) 62, 643, 768, 781, 1113
CaiI CAGNNNCTG 1 cut(s) 329
Cfr13I GGNCC 3 cut(s) 131, 693, 694
ClaI ATCGAT 1 cut(s) 818
Csp6I GTAC 4 cut(s) 316, 757, 1155, 1183
CviAII CATG 7 cut(s) 10, 16, 221, 412, 674, 983, 1108
CviQI GTAC 4 cut(s) 316, 757, 1155, 1183
DdeI CTNAG 4 cut(s) 161, 354, 566, 1055
DpnI GATC 9 cut(s) 327, 629, 669, 821, 856, 906, 1206, 1214, 1221
DpnII GATC 9 cut(s) 325, 627, 667, 819, 854, 904, 1204, 1212, 1219
DraIII CACNNNGTG 1 cut(s) 676
EaeI YGGCCR 2 cut(s) 12, 1026
Eam1104I CTCTTC 4 cut(s) 202, 462, 716, 1056
EarI CTCTTC 4 cut(s) 202, 462, 716, 1056
Ecl136II GAGCTC 1 cut(s) 407
Eco105I TACGTA 1 cut(s) 1182
Eco130I CCWWGG 2 cut(s) 15, 636
Eco24I GRGCYC 3 cut(s) 409, 457, 697
Eco31I GGTCTC 2 cut(s) 364, 1150
Eco53kI GAGCTC 1 cut(s) 407
Eco57I CTGAAG 2 cut(s) 459, 904
Eco88I CYCGRG 2 cut(s) 582, 773
EcoICRI GAGCTC 1 cut(s) 407
EcoO109I RGGNCCY 2 cut(s) 693, 694
EcoRI GAATTC 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 551
EcoT14I CCWWGG 2 cut(s) 15, 636
EcoT38I GRGCYC 3 cut(s) 409, 457, 697
ErhI CCWWGG 2 cut(s) 15, 636
FaeI CATG 7 cut(s) 13, 19, 224, 415, 677, 986, 1111
FalI AAGNNNNNCTT 4 cut(s) 184, 216, 629, 661
FaqI GGGAC 1 cut(s) 52
FatI CATG 7 cut(s) 9, 15, 220, 411, 673, 982, 1107
FauNDI CATATG 1 cut(s) 1007
FbaI TGATCA 2 cut(s) 667, 904
FblI GTMKAC 3 cut(s) 288, 860, 1246
Fnu4HI GCNGC 3 cut(s) 828, 869, 916
FokI GGATG 1 cut(s) 965
FriOI GRGCYC 3 cut(s) 409, 457, 697
Fsp4HI GCNGC 3 cut(s) 828, 869, 916
FspBI CTAG 1 cut(s) 545
GluI GCNGC 3 cut(s) 828, 869, 916
GsaI CCCAGC 1 cut(s) 565
HaeIII GGCC 8 cut(s) 14, 132, 426, 641, 695, 779, 981, 1028
HapII CCGG 3 cut(s) 103, 576, 1037
Hin1II CATG 7 cut(s) 13, 19, 224, 415, 677, 986, 1111
HinfI GANTC 1 cut(s) 1033
HpaII CCGG 3 cut(s) 103, 576, 1037
HphI GGTGA 5 cut(s) 92, 452, 455, 523, 662
Hpy166II GTNNAC 3 cut(s) 289, 861, 1247
Hpy188I TCNGA 4 cut(s) 439, 569, 611, 923
Hpy188III TCNNGA 4 cut(s) 112, 584, 852, 1037
Hpy8I GTNNAC 3 cut(s) 289, 861, 1247
HpyAV CCTTC 4 cut(s) 434, 496, 1031, 1120
HpyCH4III ACNGT 2 cut(s) 388, 810
HpyCH4IV ACGT 1 cut(s) 1181
HpyCH4V TGCA 7 cut(s) 60, 204, 365, 700, 830, 868, 960
HpyF10VI GCNNNNNNNGC 3 cut(s) 201, 776, 877
HpyF3I CTNAG 4 cut(s) 161, 354, 566, 1055
HpySE526I ACGT 1 cut(s) 1181
Hsp92II CATG 7 cut(s) 13, 19, 224, 415, 677, 986, 1111
Kpn2I TCCGGA 1 cut(s) 1036
Ksp22I TGATCA 2 cut(s) 667, 904
Kzo9I GATC 9 cut(s) 325, 627, 667, 819, 854, 904, 1204, 1212, 1219
LguI GCTCTTC 2 cut(s) 202, 462
LmnI GCTCC 3 cut(s) 4, 412, 1023
Lsp1109I GCAGC 3 cut(s) 814, 880, 927
LweI GCATC 1 cut(s) 1005
MaeI CTAG 1 cut(s) 545
MaeII ACGT 1 cut(s) 1181
MaeIII GTNAC 1 cut(s) 656
MalI GATC 9 cut(s) 327, 629, 669, 821, 856, 906, 1206, 1214, 1221
MboI GATC 9 cut(s) 325, 627, 667, 819, 854, 904, 1204, 1212, 1219
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 4 cut(s) 9, 409, 457, 697
MlsI TGGCCA 2 cut(s) 14, 1028
MluCI AATT 8 cut(s) 265, 571, 588, 686, 749, 798, 1135, 1270
MluNI TGGCCA 2 cut(s) 14, 1028
MmeI TCCRAC 1 cut(s) 239
Mox20I TGGCCA 2 cut(s) 14, 1028
MroI TCCGGA 1 cut(s) 1036
MroXI GAANNNNTTC 1 cut(s) 196
MscI TGGCCA 2 cut(s) 14, 1028
MseI TTAA 4 cut(s) 486, 801, 894, 1160
MslI CAYNNNNRTG 2 cut(s) 14, 20
Msp20I TGGCCA 2 cut(s) 14, 1028
MspI CCGG 3 cut(s) 103, 576, 1037
MspR9I CCNGG 1 cut(s) 553
MvaI CCWGG 1 cut(s) 553
MvnI CGCG 1 cut(s) 399
MwoI GCNNNNNNNGC 3 cut(s) 201, 776, 877
NcoI CCATGG 1 cut(s) 15
NdeI CATATG 1 cut(s) 1007
NdeII GATC 9 cut(s) 325, 627, 667, 819, 854, 904, 1204, 1212, 1219
NlaIII CATG 7 cut(s) 13, 19, 224, 415, 677, 986, 1111
NlaIV GGNNCC 1 cut(s) 695
NspI RCATGY 1 cut(s) 1111
PaeR7I CTCGAG 2 cut(s) 582, 773
PciSI GCTCTTC 2 cut(s) 202, 462
PdmI GAANNNNTTC 1 cut(s) 196
PfeI GAWTC 1 cut(s) 1033
PkrI GCNGC 3 cut(s) 829, 870, 917
Ppu21I YACGTR 1 cut(s) 1182
PshBI ATTAAT 1 cut(s) 1160
Psp124BI GAGCTC 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 551
PspFI CCCAGC 1 cut(s) 561
PspGI CCWGG 1 cut(s) 551
PspN4I GGNNCC 1 cut(s) 695
PspOMI GGGCCC 1 cut(s) 693
PspPI GGNCC 3 cut(s) 131, 693, 694
PspXI VCTCGAGB 1 cut(s) 773
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 1 cut(s) 325
RsaI GTAC 4 cut(s) 317, 758, 1156, 1184
RsaNI GTAC 4 cut(s) 316, 757, 1155, 1183
RseI CAYNNNNRTG 2 cut(s) 14, 20
SacI GAGCTC 1 cut(s) 409
SapI GCTCTTC 2 cut(s) 202, 462
SaqAI TTAA 4 cut(s) 486, 801, 894, 1160
SatI GCNGC 3 cut(s) 828, 869, 916
Sau3AI GATC 9 cut(s) 325, 627, 667, 819, 854, 904, 1204, 1212, 1219
Sau96I GGNCC 3 cut(s) 131, 693, 694
ScrFI CCNGG 1 cut(s) 553
SduI GDGCHC 4 cut(s) 9, 409, 457, 697
SfaNI GCATC 1 cut(s) 1005
Sfr274I CTCGAG 2 cut(s) 582, 773
SlaI CTCGAG 2 cut(s) 582, 773
SmiMI CAYNNNNRTG 2 cut(s) 14, 20
SmlI CTYRAG 4 cut(s) 110, 582, 761, 773
SmoI CTYRAG 4 cut(s) 110, 582, 761, 773
SnaBI TACGTA 1 cut(s) 1182
Sse9I AATT 8 cut(s) 265, 571, 588, 686, 749, 798, 1135, 1270
SsiI CCGC 1 cut(s) 463
SspMI CTAG 1 cut(s) 545
SstI GAGCTC 1 cut(s) 409
StyD4I CCNGG 1 cut(s) 551
StyI CCWWGG 2 cut(s) 15, 636
TaaI ACNGT 2 cut(s) 388, 810
TaiI ACGT 1 cut(s) 1184
TaqI TCGA 4 cut(s) 583, 774, 818, 1211
TaqII GACCGA 1 cut(s) 1197
TasI AATT 8 cut(s) 265, 571, 588, 686, 749, 798, 1135, 1270
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 1 cut(s) 1033
Tru1I TTAA 4 cut(s) 486, 801, 894, 1160
Tru9I TTAA 4 cut(s) 486, 801, 894, 1160
TscAI CASTG 3 cut(s) 27, 169, 193
TseI GCWGC 3 cut(s) 827, 868, 915
TspDTI ATGAA 5 cut(s) 28, 185, 1065, 1088, 1181
TspRI CASTG 3 cut(s) 27, 169, 193
VspI ATTAAT 1 cut(s) 1160
XapI RAATTY 4 cut(s) 265, 571, 686, 749
XceI RCATGY 1 cut(s) 1111
XhoI CTCGAG 2 cut(s) 582, 773
XmiI GTMKAC 3 cut(s) 288, 860, 1246
XmnI GAANNNNTTC 1 cut(s) 196
XspI CTAG 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.