Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002024

Physical Location & Seq

Genomic Coordinates Forward (+)

25408586 .. 25409230

Gene Structure 645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g24880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCGAGCTTAATGGTGGAGACCACCAACAAAATGCTAGACAATTGGACGACCCTCGTAGATTCCGGCACTCAAGAATTCGATATCGAAAGAGAAATCACAGCAACCGCCGGAGAGATCATCGCCAAAACCAGCTTTGGCATCAGCTACCAAAGTGGCCGGCTAGTGTTCGAAAAACTAAGAGCCTTGCAAACGACACTATTCAAAACGATCCGTTTCGTGGGAGTTCCTTTCGGGAAAATAATGCACCCTAAGAAAGCCCTAGAGGCCAGAAAACTTGGGCAAGAAATTAACCAATTGTTCTTGTCACTAATTGACGAAAGACGCAAAATGATCACAGGGTCGGGGCCGCAGAACGACCTGCTTGGCTCGTTGCTTAAACAGAGTGAACATGGAGGGTTCACAAAGTCCTTAACTACAAAAGAAGTTGTGGATGAGTGCAAGACATTCTTCTTTGGAGGTCATGAGACAACTGCATTGGCAATCACATGGACAATGTTGCTCCTGGCCACCCACCAGGATTGGCAAGATCAGTTGAGAGAGGAGATTAGGGAAGTGGTCGGAGACAAAGAAATTGACGTGAACATGCTTTCTGGACTAAAGAAGGTAAACCTTTTTTTCTCCCTTTTTTCTTTTATTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

215

Amino Acids

24.2

Weight (kDa)

6.12

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	3 - 200	1.4e-27	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52400
fragaria_vesca	FvH4_7g29610 FvH4_7g29611 FvH4_7g29620
malus_domestica	MD01G1202600.v1.1 MD01G1202700.v1.1 MD01G1203000.v1.1 MD07G1272000.v1.1 MD07G1272300.v1.1 MD07G1272400.v1.1
prunus_persica	Prupe.2G295700_v2.0.a1 Prupe.2G295800_v2.0.a1
pyrus_communis	pycom01g21190 pycom01g21200 pycom07g24870 pycom07g24880
rosa_chinensis	RchiOBHm_Chr1g0377591 RchiOBHm_Chr1g0377601 RchiOBHm_Chr1g0377631
rosa_laevigata	RLG00000026513 RLG00000026514
rosa_multiflora	Rmu_co8133244.1_g000001 Rmu_sc0002832.1_g000010 Rmu_sc0002832.1_g000011 Rmu_sc0002832.1_g000012 Rmu_sc0012587.1_g000009 Rmu_sc0035943.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281180 Rroxscaffold_4G00281200 Rroxscaffold_4G00281210
rosa_rugosa	Rorug01G0403700 Rorug01G0403800
rosa_samantha	Rh1AG428800 Rh1AG428900 Rh1AG429000 Rh1AG429100 Rh1BG380200 Rh1BG380400 Rh1CG394400 Rh1CG394600 Rh1DG411400 Rh1DG411600
rosa_wichuraiana	Rw1G036970 Rw1G036980 Rw1G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	369
AciI	CCGC	2 cut(s)	108, 350
AclWI	GGATC	1 cut(s)	205
AcoI	YGGCCR	2 cut(s)	157, 507
AcsI	RAATTY	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	220
AgsI	TTSAA	2 cut(s)	205, 641
AjiI	CACGTC	1 cut(s)	580
AjnI	CCWGG	2 cut(s)	504, 516
AluBI	AGCT	3 cut(s)	9, 135, 147
AluI	AGCT	3 cut(s)	9, 135, 147
Alw26I	GTCTC	3 cut(s)	14, 461, 558
AlwI	GGATC	1 cut(s)	205
AoxI	GGCC	4 cut(s)	157, 267, 347, 507
ApoI	RAATTY	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	347
AsuII	TTCGAA	1 cut(s)	171
BalI	TGGCCA	1 cut(s)	509
BciT130I	CCWGG	2 cut(s)	506, 518
BclI	TGATCA	1 cut(s)	333
BcoDI	GTCTC	3 cut(s)	14, 461, 558
BfaI	CTAG	3 cut(s)	38, 164, 263
BfuAI	ACCTGC	1 cut(s)	369
BglI	GCCNNNNNGGC	1 cut(s)	266
BisI	GCNGC	1 cut(s)	350
BlsI	GCNGC	1 cut(s)	351
Bme1390I	CCNGG	2 cut(s)	506, 518
BmgBI	CACGTC	1 cut(s)	580
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	2 cut(s)	506, 518
BmsI	GCATC	1 cut(s)	150
Bpu14I	TTCGAA	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse118I	RCCGGY	1 cut(s)	159
BseBI	CCWGG	2 cut(s)	506, 518
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseRI	GAGGAG	1 cut(s)	557
BshFI	GGCC	4 cut(s)	159, 269, 349, 509
BsiSI	CCGG	3 cut(s)	66, 111, 160
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmAI	GTCTC	3 cut(s)	14, 461, 558
BsnI	GGCC	4 cut(s)	159, 269, 349, 509
Bso31I	GGTCTC	1 cut(s)	14
Bsp119I	TTCGAA	1 cut(s)	171
Bsp143I	GATC	4 cut(s)	117, 210, 333, 529
BspACI	CCGC	2 cut(s)	108, 350
BspANI	GGCC	4 cut(s)	159, 269, 349, 509
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	1 cut(s)	348
BspMI	ACCTGC	1 cut(s)	369
BspPI	GGATC	1 cut(s)	205
BspT104I	TTCGAA	1 cut(s)	171
BspTNI	GGTCTC	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	159
BssAI	RCCGGY	1 cut(s)	159
BssMI	GATC	4 cut(s)	117, 210, 333, 529
Bst2UI	CCWGG	2 cut(s)	506, 518
BstBI	TTCGAA	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	7, 161
BstDEI	CTNAG	2 cut(s)	179, 252
BstF5I	GGATG	1 cut(s)	439
BstKTI	GATC	4 cut(s)	120, 213, 336, 532
BstMAI	GTCTC	3 cut(s)	14, 461, 558
BstMBI	GATC	4 cut(s)	117, 210, 333, 529
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNI	CCWGG	2 cut(s)	506, 518
BstNSI	RCATGY	1 cut(s)	589
BstSCI	CCNGG	2 cut(s)	504, 516
BsuRI	GGCC	4 cut(s)	159, 269, 349, 509
BtgZI	GCGATG	1 cut(s)	106
BtrI	CACGTC	1 cut(s)	580
BtsCI	GGATG	1 cut(s)	439
BveI	ACCTGC	1 cut(s)	369
Cac8I	GCNNGC	2 cut(s)	7, 161
CciI	TCATGA	1 cut(s)	463
Cfr10I	RCCGGY	1 cut(s)	159
Cfr13I	GGNCC	1 cut(s)	347
CseI	GACGC	1 cut(s)	333
CspCI	CAANNNNNGTGG	2 cut(s)	503, 538
CviAII	CATG	4 cut(s)	392, 464, 489, 586
DdeI	CTNAG	2 cut(s)	179, 252
DpnI	GATC	4 cut(s)	119, 212, 335, 531
DpnII	GATC	4 cut(s)	117, 210, 333, 529
EaeI	YGGCCR	2 cut(s)	157, 507
Eco31I	GGTCTC	1 cut(s)	14
Eco32I	GATATC	1 cut(s)	85
EcoRI	GAATTC	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	504, 516
EcoRV	GATATC	1 cut(s)	85
FaeI	CATG	4 cut(s)	395, 467, 492, 589
FaiI	YATR	4 cut(s)	393, 465, 490, 587
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FatI	CATG	4 cut(s)	391, 463, 488, 585
FbaI	TGATCA	1 cut(s)	333
Fnu4HI	GCNGC	1 cut(s)	350
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	1 cut(s)	350
FspBI	CTAG	3 cut(s)	38, 164, 263
GluI	GCNGC	1 cut(s)	350
HaeIII	GGCC	4 cut(s)	159, 269, 349, 509
HapII	CCGG	3 cut(s)	66, 111, 160
HgaI	GACGC	1 cut(s)	333
Hin1II	CATG	4 cut(s)	395, 467, 492, 589
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	3 cut(s)	66, 111, 160
Hpy166II	GTNNAC	4 cut(s)	389, 402, 583, 610
Hpy188I	TCNGA	1 cut(s)	563
Hpy188III	TCNNGA	4 cut(s)	74, 235, 464, 594
Hpy8I	GTNNAC	4 cut(s)	389, 402, 583, 610
HpyAV	CCTTC	1 cut(s)	598
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	4 cut(s)	190, 247, 441, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	2 cut(s)	179, 252
HpySE526I	ACGT	1 cut(s)	579
Hsp92II	CATG	4 cut(s)	395, 467, 492, 589
KroI	GCCGGC	1 cut(s)	159
KroNI	GCCGGC	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	333
Kzo9I	GATC	4 cut(s)	117, 210, 333, 529
LmnI	GCTCC	1 cut(s)	507
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	3 cut(s)	38, 164, 263
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	1 cut(s)	306
MalI	GATC	4 cut(s)	119, 212, 335, 531
MboI	GATC	4 cut(s)	117, 210, 333, 529
MboII	GAAGA	1 cut(s)	442
MfeI	CAATTG	2 cut(s)	43, 296
MlsI	TGGCCA	1 cut(s)	509
MluCI	AATT	6 cut(s)	43, 77, 288, 296, 312, 573
MluNI	TGGCCA	1 cut(s)	509
MmeI	TCCRAC	1 cut(s)	541
MnlI	CCTC	5 cut(s)	65, 259, 389, 452, 535
Mox20I	TGGCCA	1 cut(s)	509
MroNI	GCCGGC	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	509
MseI	TTAA	4 cut(s)	11, 291, 378, 413
Msp20I	TGGCCA	1 cut(s)	509
MspI	CCGG	3 cut(s)	66, 111, 160
MspR9I	CCNGG	2 cut(s)	506, 518
MunI	CAATTG	2 cut(s)	43, 296
MvaI	CCWGG	2 cut(s)	506, 518
MwoI	GCNNNNNNNGC	1 cut(s)	266
NaeI	GCCGGC	1 cut(s)	161
NdeII	GATC	4 cut(s)	117, 210, 333, 529
NgoMIV	GCCGGC	1 cut(s)	159
NlaIII	CATG	4 cut(s)	395, 467, 492, 589
NlaIV	GGNNCC	1 cut(s)	348
NmuCI	GTSAC	1 cut(s)	306
NspI	RCATGY	1 cut(s)	589
NspV	TTCGAA	1 cut(s)	171
PagI	TCATGA	1 cut(s)	463
PdiI	GCCGGC	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	351
Psp6I	CCWGG	2 cut(s)	504, 516
PspGI	CCWGG	2 cut(s)	504, 516
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	1 cut(s)	347
SaqAI	TTAA	4 cut(s)	11, 291, 378, 413
SatI	GCNGC	1 cut(s)	350
Sau3AI	GATC	4 cut(s)	117, 210, 333, 529
Sau96I	GGNCC	1 cut(s)	347
ScrFI	CCNGG	2 cut(s)	506, 518
SetI	ASST	8 cut(s)	11, 137, 149, 363, 463, 582, 609, 615
SfaNI	GCATC	1 cut(s)	150
SfuI	TTCGAA	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	6 cut(s)	43, 77, 288, 296, 312, 573
SsiI	CCGC	2 cut(s)	108, 350
SspMI	CTAG	3 cut(s)	38, 164, 263
StyD4I	CCNGG	2 cut(s)	504, 516
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	3 cut(s)	81, 87, 171
TasI	AATT	6 cut(s)	43, 77, 288, 296, 312, 573
TauI	GCSGC	1 cut(s)	352
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	4 cut(s)	11, 291, 378, 413
Tru9I	TTAA	4 cut(s)	11, 291, 378, 413
TseFI	GTSAC	1 cut(s)	306
Tsp45I	GTSAC	1 cut(s)	306
TspGWI	ACGGA	1 cut(s)	203
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	1 cut(s)	589
XspI	CTAG	3 cut(s)	38, 164, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.