Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002024

Physical Location & Seq

Genomic Coordinates Forward (+)

51125526 .. 51127650

Gene Structure 2125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0403800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGTGAATCTGAGGAGGACCCGGAAAAGAGTCCGTGCAATCCCTCGTGCCCCAGATGGAAGTGCCTTTCAAAATTGTAATAAATGTGGGGTTTCTGTGCCTATTGCTTTGGCTGTGATGCATGAGTGTGAACCCAACAAGGAGGTGAAGAGGTTTAAAGGTGTAGGCTATGATGTTGAGGAGAAGCAGAGCTTTTGGGACCAACTAGTTGTGATGGCGCCTTTTCATTTCTTCATGAAAGAGTTTACAAAGACCAGGAAGGGTGGAGATTGGGTTGAGACTAATCGAGACGGGTTTGAGGTGTGGAAGAAAATGTCCGAGAAGGAGAGGCAACCATATGTCAAAGAAGCAGAGAGGATTGATGAGGCTTATCAGAAAGCTTTGCTCAAAGAATCAAATGATGGGCTAAAGGTAGATGATGAAGCAGATTCTGCAAATACAGCTGGGAACAATGGGAAGTTTGGTGAGTTGTATGAAGACTCAGACAGTGAGAGTTCTGATTTTCTTGGTGAATCATGGGACAATTCTGTTAGAACTGGATCTTGGCACACCTACCATCGGCCAGTGGTGCATCAGTTTACCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

195

Amino Acids

22.45

Weight (kDa)

6.01

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52400
fragaria_vesca	FvH4_7g29610 FvH4_7g29611 FvH4_7g29620
malus_domestica	MD01G1202600.v1.1 MD01G1202700.v1.1 MD01G1203000.v1.1 MD07G1272000.v1.1 MD07G1272300.v1.1 MD07G1272400.v1.1
prunus_persica	Prupe.2G295700_v2.0.a1 Prupe.2G295800_v2.0.a1
pyrus_communis	pycom01g21190 pycom01g21200 pycom07g24870 pycom07g24880
rosa_chinensis	RchiOBHm_Chr1g0377591 RchiOBHm_Chr1g0377601 RchiOBHm_Chr1g0377631
rosa_laevigata	RLG00000026513 RLG00000026514
rosa_multiflora	Rmu_co8133244.1_g000001 Rmu_sc0002832.1_g000010 Rmu_sc0002832.1_g000011 Rmu_sc0002832.1_g000012 Rmu_sc0012587.1_g000009 Rmu_sc0035943.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281180 Rroxscaffold_4G00281200 Rroxscaffold_4G00281210
rosa_rugosa	Rorug01G0403700 Rorug01G0403800
rosa_samantha	Rh1AG428800 Rh1AG428900 Rh1AG429000 Rh1AG429100 Rh1BG380200 Rh1BG380400 Rh1CG394400 Rh1CG394600 Rh1DG411400 Rh1DG411600
rosa_wichuraiana	Rw1G036970 Rw1G036980 Rw1G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	217
AclWI	GGATC	1 cut(s)	547
AcoI	YGGCCR	1 cut(s)	560
AcyI	GRCGYC	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	558
AgsI	TTSAA	1 cut(s)	71
AhlI	ACTAGT	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	254
AjuI	GAANNNNNNNTTGG	2 cut(s)	526, 558
AluBI	AGCT	3 cut(s)	192, 380, 443
AluI	AGCT	3 cut(s)	192, 380, 443
Alw26I	GTCTC	2 cut(s)	272, 282
AlwI	GGATC	1 cut(s)	547
AlwNI	CAGNNNCTG	1 cut(s)	431
AoxI	GGCC	1 cut(s)	560
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	18, 199
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	4 cut(s)	16, 157, 476, 521
AvaII	GGWCC	2 cut(s)	18, 199
BaeGI	GKGCMC	1 cut(s)	52
BanI	GGYRCC	1 cut(s)	217
BauI	CACGAG	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	483
BccI	CCATC	4 cut(s)	50, 208, 395, 564
BciT130I	CCWGG	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	22
BcoDI	GTCTC	2 cut(s)	272, 282
BcuI	ACTAGT	1 cut(s)	205
BfaI	CTAG	1 cut(s)	206
BfoI	RGCGCY	1 cut(s)	221
Bme1390I	CCNGG	2 cut(s)	22, 256
Bme18I	GGWCC	2 cut(s)	18, 199
BmgT120I	GGNCC	2 cut(s)	18, 199
BmiI	GGNNCC	3 cut(s)	20, 200, 219
BmrFI	CCNGG	2 cut(s)	22, 256
BmsI	GCATC	2 cut(s)	108, 580
BpiI	GAAGAC	1 cut(s)	483
BpuMI	CCSGG	1 cut(s)	22
BsaHI	GRCGYC	1 cut(s)	218
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	1 cut(s)	558
Bse1I	ACTGG	2 cut(s)	541, 563
BseBI	CCWGG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	558
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	2 cut(s)	541, 563
BseRI	GAGGAG	2 cut(s)	28, 194
BseSI	GKGCMC	1 cut(s)	52
BseYI	CCCAGC	1 cut(s)	443
BshFI	GGCC	1 cut(s)	562
BshNI	GGYRCC	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	2 cut(s)	212, 533
BslI	CCNNNNNNNGG	1 cut(s)	558
BsmAI	GTCTC	2 cut(s)	272, 282
BsmBI	CGTCTC	1 cut(s)	282
BsmFI	GGGAC	2 cut(s)	212, 533
BsnI	GGCC	1 cut(s)	562
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	1 cut(s)	539
BspANI	GGCC	1 cut(s)	562
BspCNI	CTCAG	1 cut(s)	494
BspHI	TCATGA	2 cut(s)	234, 584
BspLI	GGNNCC	3 cut(s)	20, 200, 219
BspPI	GGATC	1 cut(s)	547
BspT107I	GGYRCC	1 cut(s)	217
BsrI	ACTGG	2 cut(s)	541, 563
BssMI	GATC	1 cut(s)	539
BssNI	GRCGYC	1 cut(s)	218
BssSI	CACGAG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	488
Bst6I	CTCTTC	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	218
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstDEI	CTNAG	2 cut(s)	11, 481
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	1 cut(s)	542
BstMAI	GTCTC	2 cut(s)	272, 282
BstMBI	GATC	1 cut(s)	539
BstMWI	GCNNNNNNNGC	3 cut(s)	431, 440, 568
BstNI	CCWGG	1 cut(s)	256
BstSCI	CCNGG	2 cut(s)	20, 254
BstSLI	GKGCMC	1 cut(s)	52
BstV2I	GAAGAC	1 cut(s)	483
BstX2I	RGATCY	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	539
BsuRI	GGCC	1 cut(s)	562
BtsIMutI	CAGTG	2 cut(s)	493, 570
CaiI	CAGNNNCTG	1 cut(s)	431
CciI	TCATGA	2 cut(s)	234, 584
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	18, 199
CviAII	CATG	4 cut(s)	122, 235, 516, 585
CviJI	RGCY	8 cut(s)	113, 168, 192, 368, 380, 406, 443, 562
CviKI_1	RGCY	8 cut(s)	113, 168, 192, 368, 380, 406, 443, 562
DdeI	CTNAG	2 cut(s)	11, 481
DinI	GGCGCC	1 cut(s)	219
DpnI	GATC	1 cut(s)	541
DpnII	GATC	1 cut(s)	539
DraI	TTTAAA	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	560
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	18, 199
EcoO109I	RGGNCCY	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	254
EcoT22I	ATGCAT	1 cut(s)	123
EgeI	GGCGCC	1 cut(s)	219
EheI	GGCGCC	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	282
FaeI	CATG	4 cut(s)	125, 238, 519, 588
FaiI	YATR	8 cut(s)	123, 171, 236, 337, 339, 474, 517, 586
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FaqI	GGGAC	2 cut(s)	212, 533
FatI	CATG	4 cut(s)	121, 234, 515, 584
FauNDI	CATATG	1 cut(s)	337
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	219
GsaI	CCCAGC	1 cut(s)	447
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	562
HapII	CCGG	1 cut(s)	22
HhaI	GCGC	1 cut(s)	220
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	4 cut(s)	125, 238, 519, 588
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HindIII	AAGCTT	1 cut(s)	378
HinfI	GANTC	6 cut(s)	7, 30, 392, 428, 479, 512
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	4 cut(s)	16, 157, 476, 521
Hpy166II	GTNNAC	3 cut(s)	131, 246, 579
Hpy188I	TCNGA	5 cut(s)	12, 319, 375, 484, 499
Hpy188III	TCNNGA	3 cut(s)	235, 287, 585
Hpy8I	GTNNAC	3 cut(s)	131, 246, 579
HpyAV	CCTTC	2 cut(s)	253, 316
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4V	TGCA	4 cut(s)	38, 121, 434, 571
HpyF10VI	GCNNNNNNNGC	3 cut(s)	431, 440, 568
HpyF3I	CTNAG	2 cut(s)	11, 481
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	4 cut(s)	125, 238, 519, 588
HspAI	GCGC	1 cut(s)	218
KasI	GGCGCC	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	539
LpnPI	CCDG	7 cut(s)	35, 66, 241, 268, 429, 522, 576
LweI	GCATC	2 cut(s)	108, 580
MaeI	CTAG	1 cut(s)	206
MalI	GATC	1 cut(s)	541
MboI	GATC	1 cut(s)	539
MboII	GAAGA	4 cut(s)	160, 223, 319, 488
MflI	RGATCY	1 cut(s)	539
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	2 cut(s)	73, 523
Mly113I	GGCGCC	1 cut(s)	218
MlyI	GAGTC	2 cut(s)	39, 473
Mph1103I	ATGCAT	1 cut(s)	123
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	2 cut(s)	22, 256
MvaI	CCWGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	3 cut(s)	431, 440, 568
NarI	GGCGCC	1 cut(s)	218
NciI	CCSGG	1 cut(s)	22
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	1 cut(s)	539
NlaIII	CATG	4 cut(s)	125, 238, 519, 588
NlaIV	GGNNCC	3 cut(s)	20, 200, 219
NsiI	ATGCAT	1 cut(s)	123
PagI	TCATGA	2 cut(s)	234, 584
PfeI	GAWTC	4 cut(s)	7, 392, 428, 512
PleI	GAGTC	2 cut(s)	38, 473
PluTI	GGCGCC	1 cut(s)	221
PpsI	GAGTC	2 cut(s)	38, 473
PpuMI	RGGWCCY	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	443
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	3 cut(s)	20, 200, 219
PspPI	GGNCC	2 cut(s)	18, 199
PspPPI	RGGWCCY	1 cut(s)	18
PstNI	CAGNNNCTG	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	539
PvuII	CAGCTG	1 cut(s)	443
RseI	CAYNNNNRTG	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	156
Sau3AI	GATC	1 cut(s)	539
Sau96I	GGNCC	2 cut(s)	18, 199
SchI	GAGTC	2 cut(s)	39, 473
ScrFI	CCNGG	2 cut(s)	22, 256
SduI	GDGCHC	1 cut(s)	52
SfaNI	GCATC	2 cut(s)	108, 580
SfoI	GGCGCC	1 cut(s)	219
SinI	GGWCC	2 cut(s)	18, 199
SmiMI	CAYNNNNRTG	1 cut(s)	126
SpeI	ACTAGT	1 cut(s)	205
Sse9I	AATT	2 cut(s)	73, 523
SspDI	GGCGCC	1 cut(s)	217
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	2 cut(s)	20, 254
TaaI	ACNGT	1 cut(s)	488
TaqI	TCGA	1 cut(s)	286
TasI	AATT	2 cut(s)	73, 523
TfiI	GAWTC	4 cut(s)	7, 392, 428, 512
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	2 cut(s)	493, 570
TspDTI	ATGAA	5 cut(s)	215, 223, 251, 435, 489
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	2 cut(s)	493, 570
VpaK11BI	GGWCC	2 cut(s)	18, 199
XspI	CTAG	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.