Rh1DG411600

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
62881919 .. 62885274
3356 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG411600.1

Sequence Viewer

Length: 1233 bp
ATGGAGTTCATCGGGTTCTTAACAATGGCAGTCTTCATCGTCGTCGTTCTGTACTTACTCTGCAGATTGTTACTTTCTTGCTGGGTTTTTCCTGTTCTGACTTACAGGAAGCTTAAGAAAAATGGGTTAACTGGTCCGACTCCTAGTTTTCCTTTAGGAAATCTTAGCGAGATGAAGAAGAAGACTAGCCAAAGCTCTTCTTCTTCTTCATTTGGGCCATCTTCAAATGGTATAACCCATGACATACACTCAACTCTCTTTCCCTACTTTGCTCGCTGGCAGAAAGCCTACGGAAAAATGTTCGTTTACTGGTTGGGCACAGAGCCATTCCTATACGTAGCAGATGCAGCCTTACTGAAAAAATTGTCTTCGGAGGTCACCGCAAAGAATTGGGGCAAACCGGCTGTGTTTAGACGCGATAGAGCTCCCATGTTTGGTAATGGCCTTGTCATGTCCGAAGGGGATGATTGGGCCCGTCACCGCCATGTTATCACTCCAGCATTTAACCCTACTAACTTGAAGGCAATGGCTAGTTTGATGGTGGAGACCGCAACAACAATGCTAGACAACTGGGCCACTCAGATCAACACTTCCGGCATCCAAGAAATTGACGTTGAGGATTCAATCACGGCAACAGCTGGGGAGATCATTGCCAAGACCAGCTTCGGTATTAGTTACCACAGTGGTCGCCTAGTGTTCGAAAAATTAAGAGCACTACAAATGACCCTCTTCAAGACGACCCGTTTTGTGGGAGTTCCTTTTGGCAACTTCATATATCCCATGAAAACCCTCGAGGCCGGAAGACTCGGGGAAGAAATCAACCAGCTCTTTTTATCGATCATCGCTGCACGAAAGAAATCGATTAGATCAGAATCCCCGCAACACGACCTTCTCGGGATGCTACTCAAAGAGAGCGATAAACCGGGCAACTTCTCGAGGTCTCTGACCACACAGGAACTGGTGGACGAGTGCAAGACATTTTTCTTCGGCGGCCACGAGACAACGGCATTGGCGATCACATGGACGATGCTACTTCTAGCTACCCATACAGATTGGCAAGATCAATTGAGGGCAGAGATTAAGGAAGTTGTGGGAGATAAAGAAATTGATGTCAATAACCTTGCTGGACTAAAGAAGGTAATAACTCGATGCAACCACGTTGGATCATATCATGCATGTGTTTGTGTTATAAATTTATACTGGTATGGTGCTACTTATCTTCTATATAGATAA

Protein Analysis

410

Amino Acids

46.07

Weight (kDa)

9.04

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 85 - 376 3.2e-41 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1190
AbsI CCTCGAGG 1 cut(s) 791
AccII CGCG 1 cut(s) 417
AciI CCGC 5 cut(s) 381, 481, 549, 878, 990
AclWI GGATC 1 cut(s) 1171
AcoI YGGCCR 1 cut(s) 991
AcsI RAATTY 1 cut(s) 1192
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 2 cut(s) 434, 748
AflII CTTAAG 1 cut(s) 113
AgsI TTSAA 4 cut(s) 225, 520, 624, 733
AjuI GAANNNNNNNTTGG 2 cut(s) 647, 679
AluBI AGCT 7 cut(s) 112, 195, 425, 638, 663, 826, 1040
AluI AGCT 7 cut(s) 112, 195, 425, 638, 663, 826, 1040
Alw21I GWGCWC 2 cut(s) 427, 715
Alw26I GTCTC 3 cut(s) 539, 945, 992
AlwI GGATC 1 cut(s) 1171
AlwNI CAGNNNCTG 1 cut(s) 958
Ama87I CYCGRG 4 cut(s) 791, 806, 893, 934
AoxI GGCC 6 cut(s) 215, 442, 471, 573, 795, 991
ApaI GGGCCC 1 cut(s) 475
ApeKI GCWGC 2 cut(s) 347, 845
ApoI RAATTY 1 cut(s) 1192
AspS9I GGNCC 5 cut(s) 134, 215, 471, 472, 573
AsuC2I CCSGG 1 cut(s) 924
AsuHPI GGTGA 2 cut(s) 370, 470
AsuII TTCGAA 1 cut(s) 699
AvaI CYCGRG 4 cut(s) 791, 806, 893, 934
AvaII GGWCC 1 cut(s) 134
BaeGI GKGCMC 2 cut(s) 320, 475
BanII GRGCYC 2 cut(s) 427, 475
BauI CACGAG 1 cut(s) 995
BbsI GAAGAC 4 cut(s) 25, 188, 360, 808
Bbv12I GWGCWC 2 cut(s) 427, 715
BbvI GCAGC 2 cut(s) 359, 832
BccI CCATC 2 cut(s) 226, 532
BceAI ACGGC 2 cut(s) 645, 1020
BcnI CCSGG 1 cut(s) 924
BcoDI GTCTC 3 cut(s) 539, 945, 992
BfaI CTAG 6 cut(s) 144, 186, 531, 563, 692, 1037
BfmI CTRYAG 1 cut(s) 61
BfrI CTTAAG 1 cut(s) 113
BisI GCNGC 3 cut(s) 348, 846, 991
BlsI GCNGC 3 cut(s) 349, 847, 992
Bme1390I CCNGG 1 cut(s) 924
Bme18I GGWCC 1 cut(s) 134
BmeT110I CYCGRG 4 cut(s) 791, 806, 893, 934
BmgT120I GGNCC 5 cut(s) 134, 215, 471, 472, 573
BmiI GGNNCC 1 cut(s) 473
BmrFI CCNGG 1 cut(s) 924
BmrI ACTGGG 1 cut(s) 580
BmsI GCATC 5 cut(s) 334, 606, 888, 1017, 1139
BmuI ACTGGG 1 cut(s) 580
BpiI GAAGAC 4 cut(s) 25, 188, 360, 808
BpmI CTGGAG 1 cut(s) 480
Bpu14I TTCGAA 1 cut(s) 699
BpuMI CCSGG 1 cut(s) 924
Bsa29I ATCGAT 2 cut(s) 836, 860
BsaAI YACGTR 1 cut(s) 337
BsaBI GATNNNNATC 1 cut(s) 871
BsaI GGTCTC 2 cut(s) 539, 945
Bsc4I CCNNNNNNNGG 2 cut(s) 434, 748
Bse118I RCCGGY 1 cut(s) 400
Bse1I ACTGG 5 cut(s) 136, 314, 575, 963, 1205
Bse3DI GCAATG 2 cut(s) 531, 648
Bse8I GATNNNNATC 1 cut(s) 871
BseCI ATCGAT 2 cut(s) 836, 860
BseGI GGATG 3 cut(s) 469, 597, 903
BseJI GATNNNNATC 1 cut(s) 871
BseLI CCNNNNNNNGG 2 cut(s) 434, 748
BseMI GCAATG 2 cut(s) 531, 648
BseMII CTCAG 1 cut(s) 593
BseNI ACTGG 5 cut(s) 136, 314, 575, 963, 1205
BseSI GKGCMC 2 cut(s) 320, 475
BseXI GCAGC 2 cut(s) 359, 832
BseYI CCCAGC 2 cut(s) 81, 638
BsgI GTGCAG 1 cut(s) 831
Bsh1236I CGCG 1 cut(s) 417
BshFI GGCC 6 cut(s) 217, 444, 473, 575, 797, 993
BshVI ATCGAT 2 cut(s) 836, 860
BsiHKAI GWGCWC 2 cut(s) 427, 715
BsiHKCI CYCGRG 4 cut(s) 791, 806, 893, 934
BsiSI CCGG 4 cut(s) 401, 594, 798, 923
BslI CCNNNNNNNGG 2 cut(s) 434, 748
BsmAI GTCTC 3 cut(s) 539, 945, 992
BsnI GGCC 6 cut(s) 217, 444, 473, 575, 797, 993
Bso31I GGTCTC 2 cut(s) 539, 945
BsoBI CYCGRG 4 cut(s) 791, 806, 893, 934
Bsp119I TTCGAA 1 cut(s) 699
Bsp120I GGGCCC 1 cut(s) 471
Bsp1286I GDGCHC 4 cut(s) 320, 427, 475, 715
Bsp143I GATC 7 cut(s) 582, 645, 837, 866, 1014, 1060, 1163
BspACI CCGC 5 cut(s) 381, 481, 549, 878, 990
BspANI GGCC 6 cut(s) 217, 444, 473, 575, 797, 993
BspCNI CTCAG 1 cut(s) 592
BspDI ATCGAT 2 cut(s) 836, 860
BspFNI CGCG 1 cut(s) 417
BspLI GGNNCC 1 cut(s) 473
BspMAI CTGCAG 1 cut(s) 65
BspPI GGATC 1 cut(s) 1171
BspQI GCTCTTC 1 cut(s) 202
BspT104I TTCGAA 1 cut(s) 699
BspTI CTTAAG 1 cut(s) 113
BspTNI GGTCTC 2 cut(s) 539, 945
BsrDI GCAATG 2 cut(s) 531, 648
BsrFI RCCGGY 1 cut(s) 400
BsrI ACTGG 5 cut(s) 136, 314, 575, 963, 1205
BssAI RCCGGY 1 cut(s) 400
BssMI GATC 7 cut(s) 582, 645, 837, 866, 1014, 1060, 1163
BssSI CACGAG 1 cut(s) 995
Bst2BI CACGAG 1 cut(s) 995
Bst4CI ACNGT 1 cut(s) 683
Bst6I CTCTTC 2 cut(s) 202, 734
BstAFI CTTAAG 1 cut(s) 113
BstBAI YACGTR 1 cut(s) 337
BstBI TTCGAA 1 cut(s) 699
BstC8I GCNNGC 2 cut(s) 274, 278
BstDEI CTNAG 2 cut(s) 164, 579
BstEII GGTNACC 1 cut(s) 376
BstF5I GGATG 3 cut(s) 469, 597, 903
BstFNI CGCG 1 cut(s) 417
BstKTI GATC 7 cut(s) 585, 648, 840, 869, 1017, 1063, 1166
BstMAI GTCTC 3 cut(s) 539, 945, 992
BstMBI GATC 7 cut(s) 582, 645, 837, 866, 1014, 1060, 1163
BstMWI GCNNNNNNNGC 1 cut(s) 347
BstNSI RCATGY 1 cut(s) 1179
BstPI GGTNACC 1 cut(s) 376
BstSCI CCNGG 1 cut(s) 922
BstSFI CTRYAG 1 cut(s) 61
BstSLI GKGCMC 2 cut(s) 320, 475
BstSNI TACGTA 1 cut(s) 337
BstUI CGCG 1 cut(s) 417
BstV1I GCAGC 2 cut(s) 359, 832
BstV2I GAAGAC 4 cut(s) 25, 188, 360, 808
Bsu15I ATCGAT 2 cut(s) 836, 860
BsuRI GGCC 6 cut(s) 217, 444, 473, 575, 797, 993
BsuTUI ATCGAT 2 cut(s) 836, 860
BtgZI GCGATG 1 cut(s) 826
BtsCI GGATG 3 cut(s) 469, 597, 903
BtsIMutI CAGTG 1 cut(s) 688
Cac8I GCNNGC 2 cut(s) 274, 278
CaiI CAGNNNCTG 1 cut(s) 958
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 5 cut(s) 134, 215, 471, 472, 573
ClaI ATCGAT 2 cut(s) 836, 860
CseI GACGC 1 cut(s) 423
Csp6I GTAC 1 cut(s) 52
CviAII CATG 8 cut(s) 239, 430, 451, 485, 781, 1020, 1172, 1176
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 2 cut(s) 164, 579
DpnI GATC 7 cut(s) 584, 647, 839, 868, 1016, 1062, 1165
DpnII GATC 7 cut(s) 582, 645, 837, 866, 1014, 1060, 1163
EaeI YGGCCR 1 cut(s) 991
Eam1104I CTCTTC 2 cut(s) 202, 734
EarI CTCTTC 2 cut(s) 202, 734
Ecl136II GAGCTC 1 cut(s) 425
Eco105I TACGTA 1 cut(s) 337
Eco24I GRGCYC 2 cut(s) 427, 475
Eco31I GGTCTC 2 cut(s) 539, 945
Eco47I GGWCC 1 cut(s) 134
Eco53kI GAGCTC 1 cut(s) 425
Eco88I CYCGRG 4 cut(s) 791, 806, 893, 934
Eco91I GGTNACC 1 cut(s) 376
EcoICRI GAGCTC 1 cut(s) 425
EcoO65I GGTNACC 1 cut(s) 376
EcoT22I ATGCAT 1 cut(s) 1177
EcoT38I GRGCYC 2 cut(s) 427, 475
FaeI CATG 8 cut(s) 242, 433, 454, 488, 784, 1023, 1175, 1179
FalI AAGNNNNNCTT 4 cut(s) 184, 216, 647, 679
FatI CATG 8 cut(s) 238, 429, 450, 484, 780, 1019, 1171, 1175
FauI CCCGC 1 cut(s) 885
Fnu4HI GCNGC 3 cut(s) 348, 846, 991
FokI GGATG 3 cut(s) 476, 584, 910
FriOI GRGCYC 2 cut(s) 427, 475
Fsp4HI GCNGC 3 cut(s) 348, 846, 991
FspBI CTAG 6 cut(s) 144, 186, 531, 563, 692, 1037
GluI GCNGC 3 cut(s) 348, 846, 991
GsaI CCCAGC 2 cut(s) 85, 642
GsuI CTGGAG 1 cut(s) 480
HaeIII GGCC 6 cut(s) 217, 444, 473, 575, 797, 993
HapII CCGG 4 cut(s) 401, 594, 798, 923
HgaI GACGC 1 cut(s) 423
Hin1II CATG 8 cut(s) 242, 433, 454, 488, 784, 1023, 1175, 1179
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 4 cut(s) 139, 620, 804, 872
HpaI GTTAAC 1 cut(s) 129
HpaII CCGG 4 cut(s) 401, 594, 798, 923
HphI GGTGA 2 cut(s) 370, 470
Hpy166II GTNNAC 3 cut(s) 129, 307, 964
Hpy188I TCNGA 7 cut(s) 99, 138, 373, 457, 582, 871, 945
Hpy188III TCNNGA 3 cut(s) 733, 895, 934
Hpy8I GTNNAC 3 cut(s) 129, 307, 964
Hpy99I CGWCG 2 cut(s) 44, 47
HpyAV CCTTC 4 cut(s) 452, 514, 899, 1129
HpyCH4III ACNGT 1 cut(s) 683
HpyCH4IV ACGT 3 cut(s) 336, 612, 1158
HpyCH4V TGCA 6 cut(s) 63, 347, 848, 972, 1152, 1175
HpyF10VI GCNNNNNNNGC 1 cut(s) 347
HpyF3I CTNAG 2 cut(s) 164, 579
HpySE526I ACGT 3 cut(s) 336, 612, 1158
Hsp92II CATG 8 cut(s) 242, 433, 454, 488, 784, 1023, 1175, 1179
KspAI GTTAAC 1 cut(s) 129
Kzo9I GATC 7 cut(s) 582, 645, 837, 866, 1014, 1060, 1163
LguI GCTCTTC 1 cut(s) 202
LmnI GCTCC 1 cut(s) 430
Lsp1109I GCAGC 2 cut(s) 359, 832
LweI GCATC 5 cut(s) 334, 606, 888, 1017, 1139
MaeI CTAG 6 cut(s) 144, 186, 531, 563, 692, 1037
MaeII ACGT 3 cut(s) 336, 612, 1158
MaeIII GTNAC 4 cut(s) 69, 376, 476, 674
MalI GATC 7 cut(s) 584, 647, 839, 868, 1016, 1062, 1165
MboI GATC 7 cut(s) 582, 645, 837, 866, 1014, 1060, 1163
MfeI CAATTG 1 cut(s) 1064
MhlI GDGCHC 4 cut(s) 320, 427, 475, 715
MluCI AATT 7 cut(s) 362, 388, 606, 704, 1064, 1104, 1192
MlyI GAGTC 2 cut(s) 133, 798
MmeI TCCRAC 2 cut(s) 161, 1141
MnlI CCTC 7 cut(s) 367, 610, 737, 787, 800, 930, 1062
Mph1103I ATGCAT 1 cut(s) 1177
MseI TTAA 6 cut(s) 20, 114, 128, 504, 707, 1080
MslI CAYNNNNRTG 2 cut(s) 483, 1176
MspA1I CMGCKG 1 cut(s) 638
MspCI CTTAAG 1 cut(s) 113
MspI CCGG 4 cut(s) 401, 594, 798, 923
MspR9I CCNGG 1 cut(s) 924
MunI CAATTG 1 cut(s) 1064
MvnI CGCG 1 cut(s) 417
MwoI GCNNNNNNNGC 1 cut(s) 347
NciI CCSGG 1 cut(s) 924
NdeII GATC 7 cut(s) 582, 645, 837, 866, 1014, 1060, 1163
NlaIII CATG 8 cut(s) 242, 433, 454, 488, 784, 1023, 1175, 1179
NlaIV GGNNCC 1 cut(s) 473
NmuCI GTSAC 2 cut(s) 376, 476
NsiI ATGCAT 1 cut(s) 1177
NspI RCATGY 1 cut(s) 1179
NspV TTCGAA 1 cut(s) 699
PaeR7I CTCGAG 2 cut(s) 791, 934
PciSI GCTCTTC 1 cut(s) 202
PcsI WCGNNNNNNNCGW 2 cut(s) 993, 1010
PfeI GAWTC 2 cut(s) 620, 872
PkrI GCNGC 3 cut(s) 349, 847, 992
PleI GAGTC 2 cut(s) 133, 798
PpsI GAGTC 2 cut(s) 133, 798
Ppu21I YACGTR 1 cut(s) 337
PsiI TTATAA 1 cut(s) 1190
Psp124BI GAGCTC 1 cut(s) 427
PspEI GGTNACC 1 cut(s) 376
PspFI CCCAGC 2 cut(s) 81, 638
PspN4I GGNNCC 1 cut(s) 473
PspOMI GGGCCC 1 cut(s) 471
PspPI GGNCC 5 cut(s) 134, 215, 471, 472, 573
PspXI VCTCGAGB 1 cut(s) 791
PstI CTGCAG 1 cut(s) 65
PstNI CAGNNNCTG 1 cut(s) 958
PvuII CAGCTG 1 cut(s) 638
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
RseI CAYNNNNRTG 2 cut(s) 483, 1176
SacI GAGCTC 1 cut(s) 427
SapI GCTCTTC 1 cut(s) 202
SaqAI TTAA 6 cut(s) 20, 114, 128, 504, 707, 1080
SatI GCNGC 3 cut(s) 348, 846, 991
Sau3AI GATC 7 cut(s) 582, 645, 837, 866, 1014, 1060, 1163
Sau96I GGNCC 5 cut(s) 134, 215, 471, 472, 573
SchI GAGTC 2 cut(s) 133, 798
ScrFI CCNGG 1 cut(s) 924
SduI GDGCHC 4 cut(s) 320, 427, 475, 715
SfaNI GCATC 5 cut(s) 334, 606, 888, 1017, 1139
SfcI CTRYAG 1 cut(s) 61
Sfr274I CTCGAG 2 cut(s) 791, 934
SfuI TTCGAA 1 cut(s) 699
SinI GGWCC 1 cut(s) 134
SlaI CTCGAG 2 cut(s) 791, 934
SmiMI CAYNNNNRTG 2 cut(s) 483, 1176
SmlI CTYRAG 3 cut(s) 113, 791, 934
SmoI CTYRAG 3 cut(s) 113, 791, 934
SnaBI TACGTA 1 cut(s) 337
Sse9I AATT 7 cut(s) 362, 388, 606, 704, 1064, 1104, 1192
SsiI CCGC 5 cut(s) 381, 481, 549, 878, 990
SspMI CTAG 6 cut(s) 144, 186, 531, 563, 692, 1037
SstI GAGCTC 1 cut(s) 427
StyD4I CCNGG 1 cut(s) 922
TaaI ACNGT 1 cut(s) 683
TaiI ACGT 3 cut(s) 339, 615, 1161
TaqI TCGA 6 cut(s) 699, 792, 836, 860, 935, 1147
TasI AATT 7 cut(s) 362, 388, 606, 704, 1064, 1104, 1192
TatI WGTACW 1 cut(s) 51
TauI GCSGC 1 cut(s) 993
TfiI GAWTC 2 cut(s) 620, 872
Tru1I TTAA 6 cut(s) 20, 114, 128, 504, 707, 1080
Tru9I TTAA 6 cut(s) 20, 114, 128, 504, 707, 1080
TscAI CASTG 1 cut(s) 688
TseFI GTSAC 2 cut(s) 376, 476
TseI GCWGC 2 cut(s) 347, 845
Tsp45I GTSAC 2 cut(s) 376, 476
TspDTI ATGAA 5 cut(s) 25, 188, 198, 760, 797
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 1 cut(s) 688
Vha464I CTTAAG 1 cut(s) 113
VpaK11BI GGWCC 1 cut(s) 134
XapI RAATTY 1 cut(s) 1192
XceI RCATGY 1 cut(s) 1179
XcmI CCANNNNNNNNNTGG 1 cut(s) 955
XhoI CTCGAG 2 cut(s) 791, 934
XspI CTAG 6 cut(s) 144, 186, 531, 563, 692, 1037
Zsp2I ATGCAT 1 cut(s) 1177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.