Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001260

Physical Location & Seq

Genomic Coordinates Reverse (-)

22506216 .. 22507879

Gene Structure 1664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G55560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGATGACTTGTGCGAGCTCCGATGATAATGAGAGTGAAAAGGACAAGGACTCGGAGTCCTTCGTGGAGGTAGATCCGACAGGTAGATACGGTCGGTACGGCGAACTTCTTGGCTCAGGCGCCGTAAAAAAAGTCTACAGAGCCTTTGACCAAGAAGAAGGCATCGAGGTGGCTTGGAACCAAGTCAAACTGAGATGTTTTTCGGATGATCCAGCCATGACCGAGAGGCTTTACTCGGAGGTCAGGTTGCTTAAGAACCTTAAGAACAGTAACATCATCACCCTGTATAAAGTGTGGAGAGACGAGAGAAACAACACCTTGAACTTCATCACCGAGATCTGTACCTCCGGAAACCTGAGAGAGTACCGGAAGAAGCACAGACACGTCTCTATGAGGGCTTTGAAGAAGTGGTCCAAACAGATTCTCAAGGGCTTGGATTATCTCCACACTCACGACCCTTGCATCATCCACAGAGACCTCAACTGTAGCAATATCTTCGTCAATGGCAACATCGGCCAGGTCAAGATTGGTGATCTAGGTTTAGCTGCAATTGTGGGGAAGAACCATTTAGCTCACTCGATCCTCGGGACACCAGAGTTCATGGCTCCTGAGCTGTACGAGGAGAACTACACTGAGATGGTTGACATATACTCGTATGGAATGTGCGTTTTGGAGCTTGTGTCACTCGAGATTCCTTATAGCGAATGTGACAGCGTCGCCAAAATATACAAAAGGGTGAGCAAAGGCCTCAAACCAGAGGCTCTCAACAAAGTTAATGATCCAGAAGCTAAGGCATTTATTGAAAAATGCATCGCGCAGCCGAGAGCTAGACCTTCTGCAGCTGAGCTCCTCTGCGACCCGTTCTTTGATGGGATATTAGATGATGATGACGAAGACGGTGAAAACAATGACAACAATGGAGCTGGTCGTATTGTTGTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

314

Amino Acids

35.53

Weight (kDa)

5.25

Isoelectric Point (pI)

30.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	34 - 289	6.3e-52	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	34 - 284	7e-36	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55560
fragaria_vesca	FvH4_3g22150 FvH4_6g41240
malus_domestica	MD03G1189000.v1.1 MD09G1121400.v1.1 MD11G1205200.v1.1 MD17G1112400.v1.1
prunus_persica	Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.4G232100_v2.0.a1 Prupe.4G232100_v2.0.a1
pyrus_communis	pycom03g14190 pycom03g14210 pycom09g04580 pycom11g17800 pycom17g10410
rosa_chinensis	RchiOBHm_Chr2g0156791 RchiOBHm_Chr5g0038001 RchiOBHm_Chr5g0038041 RchiOBHm_Chr5g0042541
rosa_laevigata	RLG00000020942 RLG00000034135
rosa_multiflora	Rmu_co8331393.1_g000001 Rmu_co8390513.1_g000001 Rmu_sc0002670.1_g000011 Rmu_sc0008149.1_g000008 Rmu_sc0008278.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038120 Rroxscaffold_1G00042890 Rroxscaffold_2G00092720
rosa_rugosa	Rorug02G0456200 Rorug05G0170100 Rorug05G0201300 Rorug05G0201400
rosa_samantha	Rh2AG521800 Rh2BG535200 Rh2CG506700 Rh2DG544200 Rh5BG261300 Rh5BG261600 Rh5BG291700 Rh5CG293600 Rh5CG323900 Rh5DG270500 Rh5DG270600 Rh5DG301500
rosa_wichuraiana	Rw2G043080 Rw5G023930 Rw5G024110 Rw5G024140 Rw5G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	1 cut(s)	815
AccIII	TCCGGA	1 cut(s)	347
AclWI	GGATC	4 cut(s)	68, 203, 574, 773
AcoI	YGGCCR	1 cut(s)	514
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	4 cut(s)	98, 343, 365, 617
AflII	CTTAAG	2 cut(s)	251, 260
AflIII	ACRYGT	1 cut(s)	382
AgsI	TTSAA	3 cut(s)	322, 403, 803
AhdI	GACNNNNNGTC	1 cut(s)	55
AjiI	CACGTC	1 cut(s)	385
AjnI	CCWGG	1 cut(s)	516
Alw21I	GWGCWC	2 cut(s)	20, 849
Alw26I	GTCTC	3 cut(s)	294, 391, 468
AlwI	GGATC	4 cut(s)	68, 203, 574, 773
Ama87I	CYCGRG	2 cut(s)	584, 686
Aor13HI	TCCGGA	1 cut(s)	347
AoxI	GGCC	2 cut(s)	514, 745
ApeKI	GCWGC	3 cut(s)	545, 817, 839
ArsI	GACNNNNNNTTYG	2 cut(s)	848, 880
AspLEI	GCGC	2 cut(s)	122, 817
AspS9I	GGNCC	1 cut(s)	411
AsuHPI	GGTGA	5 cut(s)	271, 322, 542, 748, 911
AvaI	CYCGRG	2 cut(s)	584, 686
AvaII	GGWCC	1 cut(s)	411
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	2 cut(s)	20, 849
BbsI	GAAGAC	1 cut(s)	900
Bbv12I	GWGCWC	2 cut(s)	20, 849
BbvI	GCAGC	3 cut(s)	532, 829, 851
BccI	CCATC	2 cut(s)	631, 863
BceAI	ACGGC	2 cut(s)	107, 115
BcgI	CGANNNNNNTGC	2 cut(s)	478, 512
BciT130I	CCWGG	1 cut(s)	518
BcoDI	GTCTC	3 cut(s)	294, 391, 468
BfaI	CTAG	2 cut(s)	536, 828
BfmI	CTRYAG	3 cut(s)	136, 484, 837
BfoI	RGCGCY	1 cut(s)	123
BfrI	CTTAAG	2 cut(s)	251, 260
BglII	AGATCT	1 cut(s)	336
BisI	GCNGC	3 cut(s)	546, 818, 840
BlpI	GCTNAGC	1 cut(s)	843
BlsI	GCNGC	3 cut(s)	547, 819, 841
Bme1390I	CCNGG	1 cut(s)	518
Bme18I	GGWCC	1 cut(s)	411
BmeRI	GACNNNNNGTC	1 cut(s)	55
BmeT110I	CYCGRG	2 cut(s)	584, 686
BmgBI	CACGTC	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	411
BmiI	GGNNCC	3 cut(s)	121, 179, 606
BmrFI	CCNGG	1 cut(s)	518
BmsI	GCATC	3 cut(s)	171, 471, 819
BpiI	GAAGAC	1 cut(s)	900
Bpu10I	CCTNAGC	3 cut(s)	115, 609, 789
Bpu1102I	GCTNAGC	1 cut(s)	843
BpuEI	CTTGAG	1 cut(s)	410
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	468
BsaJI	CCNNGG	1 cut(s)	583
BsaWI	WCCGGW	2 cut(s)	347, 366
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 260, 665, 695
BseAI	TCCGGA	1 cut(s)	347
BseBI	CCWGG	1 cut(s)	518
BseDI	CCNNGG	1 cut(s)	583
BseGI	GGATG	2 cut(s)	211, 465
BseMII	CTCAG	6 cut(s)	129, 182, 347, 600, 624, 834
BseRI	GAGGAG	2 cut(s)	635, 839
BseXI	GCAGC	3 cut(s)	532, 829, 851
Bsh1236I	CGCG	1 cut(s)	815
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	2 cut(s)	516, 747
BshNI	GGYRCC	1 cut(s)	119
BsiEI	CGRYCG	1 cut(s)	94
BsiHKAI	GWGCWC	2 cut(s)	20, 849
BsiHKCI	CYCGRG	2 cut(s)	584, 686
BsiSI	CCGG	2 cut(s)	348, 367
BslFI	GGGAC	1 cut(s)	601
BsmAI	GTCTC	3 cut(s)	294, 391, 468
BsmBI	CGTCTC	2 cut(s)	294, 391
BsmFI	GGGAC	1 cut(s)	601
BsnI	GGCC	2 cut(s)	516, 747
Bso31I	GGTCTC	1 cut(s)	468
BsoBI	CYCGRG	2 cut(s)	584, 686
Bsp1286I	GDGCHC	2 cut(s)	20, 849
Bsp13I	TCCGGA	1 cut(s)	347
Bsp143I	GATC	6 cut(s)	73, 208, 336, 532, 579, 778
Bsp1720I	GCTNAGC	1 cut(s)	843
BspANI	GGCC	2 cut(s)	516, 747
BspCNI	CTCAG	6 cut(s)	128, 183, 348, 601, 625, 835
BspEI	TCCGGA	1 cut(s)	347
BspFNI	CGCG	1 cut(s)	815
BspLI	GGNNCC	3 cut(s)	121, 179, 606
BspMAI	CTGCAG	1 cut(s)	841
BspPI	GGATC	4 cut(s)	68, 203, 574, 773
BspT107I	GGYRCC	1 cut(s)	119
BspTI	CTTAAG	2 cut(s)	251, 260
BspTNI	GGTCTC	1 cut(s)	468
BssECI	CCNNGG	1 cut(s)	583
BssMI	GATC	6 cut(s)	73, 208, 336, 532, 579, 778
BssNI	GRCGYC	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	518
Bst4CI	ACNGT	4 cut(s)	92, 269, 485, 899
BstACI	GRCGYC	1 cut(s)	120
BstAFI	CTTAAG	2 cut(s)	251, 260
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	7 cut(s)	115, 191, 356, 609, 633, 789, 843
BstF5I	GGATG	2 cut(s)	211, 465
BstFNI	CGCG	1 cut(s)	815
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	2 cut(s)	122, 817
BstKTI	GATC	6 cut(s)	76, 211, 339, 535, 582, 781
BstMAI	GTCTC	3 cut(s)	294, 391, 468
BstMBI	GATC	6 cut(s)	73, 208, 336, 532, 579, 778
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	1 cut(s)	513
BstNI	CCWGG	1 cut(s)	518
BstSCI	CCNGG	1 cut(s)	516
BstSFI	CTRYAG	3 cut(s)	136, 484, 837
BstUI	CGCG	1 cut(s)	815
BstV1I	GCAGC	3 cut(s)	532, 829, 851
BstV2I	GAAGAC	1 cut(s)	900
BstX2I	RGATCY	2 cut(s)	73, 336
BstYI	RGATCY	2 cut(s)	73, 336
BsuRI	GGCC	2 cut(s)	516, 747
BtgZI	GCGATG	1 cut(s)	796
BtrI	CACGTC	1 cut(s)	385
BtsCI	GGATG	2 cut(s)	211, 465
BtsIMutI	CAGTG	1 cut(s)	630
Cac8I	GCNNGC	1 cut(s)	16
CfoI	GCGC	2 cut(s)	122, 817
Cfr13I	GGNCC	1 cut(s)	411
CseI	GACGC	1 cut(s)	703
Csp6I	GTAC	4 cut(s)	97, 342, 364, 616
CviAII	CATG	2 cut(s)	217, 601
CviQI	GTAC	4 cut(s)	97, 342, 364, 616
DdeI	CTNAG	7 cut(s)	115, 191, 356, 609, 633, 789, 843
DinI	GGCGCC	1 cut(s)	121
DpnI	GATC	6 cut(s)	75, 210, 338, 534, 581, 780
DpnII	GATC	6 cut(s)	73, 208, 336, 532, 579, 778
DriI	GACNNNNNGTC	1 cut(s)	55
EaeI	YGGCCR	1 cut(s)	514
Eam1105I	GACNNNNNGTC	1 cut(s)	55
Ecl136II	GAGCTC	2 cut(s)	18, 847
Eco147I	AGGCCT	1 cut(s)	747
Eco24I	GRGCYC	2 cut(s)	20, 849
Eco31I	GGTCTC	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	411
Eco53kI	GAGCTC	2 cut(s)	18, 847
Eco88I	CYCGRG	2 cut(s)	584, 686
EcoICRI	GAGCTC	2 cut(s)	18, 847
EcoRII	CCWGG	1 cut(s)	516
EcoT22I	ATGCAT	1 cut(s)	812
EcoT38I	GRGCYC	2 cut(s)	20, 849
EgeI	GGCGCC	1 cut(s)	121
EheI	GGCGCC	1 cut(s)	121
Esp3I	CGTCTC	2 cut(s)	294, 391
FaeI	CATG	2 cut(s)	220, 604
FaiI	YATR	9 cut(s)	218, 288, 392, 602, 647, 649, 657, 699, 727
FaqI	GGGAC	1 cut(s)	601
FatI	CATG	2 cut(s)	216, 600
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	546, 818, 840
FokI	GGATG	2 cut(s)	218, 452
FriOI	GRGCYC	2 cut(s)	20, 849
Fsp4HI	GCNGC	3 cut(s)	546, 818, 840
FspBI	CTAG	2 cut(s)	536, 828
GlaI	GCGC	2 cut(s)	121, 816
GluI	GCNGC	3 cut(s)	546, 818, 840
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	516, 747
HapII	CCGG	2 cut(s)	348, 367
HgaI	GACGC	1 cut(s)	703
HhaI	GCGC	2 cut(s)	122, 817
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	2 cut(s)	220, 604
Hin6I	GCGC	2 cut(s)	120, 815
HinP1I	GCGC	2 cut(s)	120, 815
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HinfI	GANTC	4 cut(s)	50, 56, 421, 691
HpaII	CCGG	2 cut(s)	348, 367
HphI	GGTGA	5 cut(s)	271, 322, 542, 748, 911
Hpy166II	GTNNAC	2 cut(s)	136, 643
Hpy188I	TCNGA	5 cut(s)	22, 55, 78, 205, 238
Hpy188III	TCNNGA	8 cut(s)	348, 452, 523, 586, 608, 688, 782, 942
Hpy8I	GTNNAC	2 cut(s)	136, 643
Hpy99I	CGWCG	1 cut(s)	719
HpyAV	CCTTC	3 cut(s)	70, 152, 843
HpyCH4III	ACNGT	4 cut(s)	92, 269, 485, 899
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	4 cut(s)	462, 548, 810, 839
HpyF10VI	GCNNNNNNNGC	1 cut(s)	513
HpyF3I	CTNAG	7 cut(s)	115, 191, 356, 609, 633, 789, 843
HpySE526I	ACGT	1 cut(s)	384
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	220, 604
HspAI	GCGC	2 cut(s)	120, 815
KasI	GGCGCC	1 cut(s)	119
Kpn2I	TCCGGA	1 cut(s)	347
Kzo9I	GATC	6 cut(s)	73, 208, 336, 532, 579, 778
LmnI	GCTCC	5 cut(s)	23, 610, 673, 852, 920
Lsp1109I	GCAGC	3 cut(s)	532, 829, 851
LweI	GCATC	3 cut(s)	171, 471, 819
MaeI	CTAG	2 cut(s)	536, 828
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	3 cut(s)	269, 681, 707
MalI	GATC	6 cut(s)	75, 210, 338, 534, 581, 780
MboI	GATC	6 cut(s)	73, 208, 336, 532, 579, 778
MboII	GAAGA	6 cut(s)	167, 382, 415, 487, 571, 905
MfeI	CAATTG	1 cut(s)	549
MflI	RGATCY	2 cut(s)	73, 336
MhlI	GDGCHC	2 cut(s)	20, 849
MluCI	AATT	1 cut(s)	549
Mly113I	GGCGCC	1 cut(s)	120
MlyI	GAGTC	2 cut(s)	44, 65
MmeI	TCCRAC	1 cut(s)	101
Mph1103I	ATGCAT	1 cut(s)	812
MroI	TCCGGA	1 cut(s)	347
MseI	TTAA	3 cut(s)	252, 261, 774
MslI	CAYNNNNRTG	2 cut(s)	167, 635
MspA1I	CMGCKG	1 cut(s)	842
MspCI	CTTAAG	2 cut(s)	251, 260
MspI	CCGG	2 cut(s)	348, 367
MspR9I	CCNGG	1 cut(s)	518
MunI	CAATTG	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	518
MvnI	CGCG	1 cut(s)	815
MwoI	GCNNNNNNNGC	1 cut(s)	513
NarI	GGCGCC	1 cut(s)	120
NdeII	GATC	6 cut(s)	73, 208, 336, 532, 579, 778
NlaIII	CATG	2 cut(s)	220, 604
NlaIV	GGNNCC	3 cut(s)	121, 179, 606
NmeAIII	GCCGAG	1 cut(s)	846
NmuCI	GTSAC	2 cut(s)	681, 707
NsiI	ATGCAT	1 cut(s)	812
PaeR7I	CTCGAG	1 cut(s)	686
PceI	AGGCCT	1 cut(s)	747
PfeI	GAWTC	2 cut(s)	421, 691
PflFI	GACNNNGTC	1 cut(s)	713
PkrI	GCNGC	3 cut(s)	547, 819, 841
PleI	GAGTC	2 cut(s)	44, 64
PluTI	GGCGCC	1 cut(s)	123
PpsI	GAGTC	2 cut(s)	44, 64
Psp124BI	GAGCTC	2 cut(s)	20, 849
Psp6I	CCWGG	1 cut(s)	516
PspGI	CCWGG	1 cut(s)	516
PspN4I	GGNNCC	3 cut(s)	121, 179, 606
PspPI	GGNCC	1 cut(s)	411
PstI	CTGCAG	1 cut(s)	841
PsuI	RGATCY	2 cut(s)	73, 336
PsyI	GACNNNGTC	1 cut(s)	713
PvuII	CAGCTG	1 cut(s)	842
RsaI	GTAC	4 cut(s)	98, 343, 365, 617
RsaNI	GTAC	4 cut(s)	97, 342, 364, 616
RseI	CAYNNNNRTG	2 cut(s)	167, 635
SacI	GAGCTC	2 cut(s)	20, 849
SaqAI	TTAA	3 cut(s)	252, 261, 774
SatI	GCNGC	3 cut(s)	546, 818, 840
Sau3AI	GATC	6 cut(s)	73, 208, 336, 532, 579, 778
Sau96I	GGNCC	1 cut(s)	411
SchI	GAGTC	2 cut(s)	44, 65
ScrFI	CCNGG	1 cut(s)	518
SduI	GDGCHC	2 cut(s)	20, 849
SfaNI	GCATC	3 cut(s)	171, 471, 819
SfcI	CTRYAG	3 cut(s)	136, 484, 837
SfoI	GGCGCC	1 cut(s)	121
Sfr274I	CTCGAG	1 cut(s)	686
SinI	GGWCC	1 cut(s)	411
SlaI	CTCGAG	1 cut(s)	686
SmiMI	CAYNNNNRTG	2 cut(s)	167, 635
SmlI	CTYRAG	4 cut(s)	251, 260, 425, 686
SmoI	CTYRAG	4 cut(s)	251, 260, 425, 686
Sse9I	AATT	1 cut(s)	549
SseBI	AGGCCT	1 cut(s)	747
SspDI	GGCGCC	1 cut(s)	119
SspMI	CTAG	2 cut(s)	536, 828
SstI	GAGCTC	2 cut(s)	20, 849
StuI	AGGCCT	1 cut(s)	747
StyD4I	CCNGG	1 cut(s)	516
TaaI	ACNGT	4 cut(s)	92, 269, 485, 899
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	3 cut(s)	165, 578, 687
TaqII	GACCGA	1 cut(s)	236
TasI	AATT	1 cut(s)	549
TfiI	GAWTC	2 cut(s)	421, 691
Tru1I	TTAA	3 cut(s)	252, 261, 774
Tru9I	TTAA	3 cut(s)	252, 261, 774
TscAI	CASTG	1 cut(s)	637
TseFI	GTSAC	2 cut(s)	681, 707
TseI	GCWGC	3 cut(s)	545, 817, 839
Tsp45I	GTSAC	2 cut(s)	681, 707
TspDTI	ATGAA	2 cut(s)	316, 589
TspRI	CASTG	1 cut(s)	637
Tth111I	GACNNNGTC	1 cut(s)	713
Vha464I	CTTAAG	2 cut(s)	251, 260
VpaK11BI	GGWCC	1 cut(s)	411
XcmI	CCANNNNNNNNNTGG	1 cut(s)	524
XhoI	CTCGAG	1 cut(s)	686
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	2 cut(s)	536, 828
Zsp2I	ATGCAT	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.