Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001260

Physical Location & Seq

Genomic Coordinates Reverse (-)

19973162 .. 19975795

Gene Structure 2634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0201300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGCGTAAGGTATAGTCTTTTGCCGCAATACTACTCCACGACTCTAGTCTCCTCTGTTTGTGGGTGTAGGGTGCAGCAGACTGGCCTTCGTCTCTCTTCGGGTTCTCCCTTCTCCCAACACAAAGTTGCAGACCCATTATTCATTTATTCATCGCAAACCAATCTCTCTCCCTCTCGCTTTGAAGCTTCTTCTTCTCTGCTTCACGTTCGTTTTCTTCCCGAAGATTCTCCGATTCGTTTTCCGTTTCCGTCTTCAGAAGTTTATGGTTTTCTGAATTTGACGTGTTGTTTCCGAAGTAAGTTCTGTACAAAGTTTGAGAAAAATTGCAAGATCTGCTGGAGTAACGTGATAACAGAGCACAGCCAAGCCATTTTGAACTCTTTGGTAGTCTGTCTTTGCAGACAAAAGTTGGATGGATATGCGGCTAGGAGCATGAAGATTAATTATGTAGTCGGCTCCTACCTTGATCCCCTTACCGTTAAGTTGCCTAACTCAAGTTTAAACCATTGGTATCTTGTGTCTATTTTTGCTTTGATAAGTATTCATGGTGTTGTTTGGTATACTGATCGGACACATGTTCAAGGACAGTCACCATATGCCTCTGGTTCTCCATCAAAAGCCGTCTGCATTTCTGATATTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

215

Amino Acids

24.05

Weight (kDa)

9.02

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55560
fragaria_vesca	FvH4_3g22150 FvH4_6g41240
malus_domestica	MD03G1189000.v1.1 MD09G1121400.v1.1 MD11G1205200.v1.1 MD17G1112400.v1.1
prunus_persica	Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.4G232100_v2.0.a1 Prupe.4G232100_v2.0.a1
pyrus_communis	pycom03g14190 pycom03g14210 pycom09g04580 pycom11g17800 pycom17g10410
rosa_chinensis	RchiOBHm_Chr2g0156791 RchiOBHm_Chr5g0038001 RchiOBHm_Chr5g0038041 RchiOBHm_Chr5g0042541
rosa_laevigata	RLG00000020942 RLG00000034135
rosa_multiflora	Rmu_co8331393.1_g000001 Rmu_co8390513.1_g000001 Rmu_sc0002670.1_g000011 Rmu_sc0008149.1_g000008 Rmu_sc0008278.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038120 Rroxscaffold_1G00042890 Rroxscaffold_2G00092720
rosa_rugosa	Rorug02G0456200 Rorug05G0170100 Rorug05G0201300 Rorug05G0201400
rosa_samantha	Rh2AG521800 Rh2BG535200 Rh2CG506700 Rh2DG544200 Rh5BG261300 Rh5BG261600 Rh5BG291700 Rh5CG293600 Rh5CG323900 Rh5DG270500 Rh5DG270600 Rh5DG301500
rosa_wichuraiana	Rw2G043080 Rw5G023930 Rw5G024110 Rw5G024140 Rw5G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	563
AciI	CCGC	2 cut(s)	26, 425
AclWI	GGATC	1 cut(s)	464
AcsI	RAATTY	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	310
AflIII	ACRYGT	2 cut(s)	284, 577
AgsI	TTSAA	3 cut(s)	185, 379, 584
AjiI	CACGTC	1 cut(s)	285
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	2 cut(s)	55, 98
AlwI	GGATC	1 cut(s)	464
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	1 cut(s)	76
ApoI	RAATTY	1 cut(s)	277
AseI	ATTAAT	2 cut(s)	444, 642
AsuHPI	GGTGA	1 cut(s)	585
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	2 cut(s)	410, 622
BceAI	ACGGC	1 cut(s)	608
BcoDI	GTCTC	2 cut(s)	55, 98
BfaI	CTAG	2 cut(s)	47, 429
BglII	AGATCT	1 cut(s)	333
BisI	GCNGC	3 cut(s)	26, 77, 426
BlsI	GCNGC	3 cut(s)	27, 78, 427
BmgBI	CACGTC	1 cut(s)	285
BmiI	GGNNCC	1 cut(s)	460
BoxI	GACNNNNGTC	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	361
BpuEI	CTTGAG	1 cut(s)	481
Bse1I	ACTGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	421
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	88
BsgI	GTGCAG	1 cut(s)	95
BshFI	GGCC	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	363
BsmAI	GTCTC	2 cut(s)	55, 98
BsmBI	CGTCTC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp1407I	TGTACA	1 cut(s)	308
Bsp143I	GATC	3 cut(s)	333, 469, 568
BspACI	CCGC	2 cut(s)	26, 425
BspANI	GGCC	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	460
BspPI	GGATC	1 cut(s)	464
BsrGI	TGTACA	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	88
BssMI	GATC	3 cut(s)	333, 469, 568
BssNAI	GTATAC	1 cut(s)	564
Bst1107I	GTATAC	1 cut(s)	564
Bst4CI	ACNGT	2 cut(s)	481, 591
Bst6I	CTCTTC	1 cut(s)	103
BstAPI	GCANNNNNTGC	1 cut(s)	336
BstAUI	TGTACA	1 cut(s)	308
BstF5I	GGATG	1 cut(s)	421
BstKTI	GATC	3 cut(s)	336, 472, 571
BstMAI	GTCTC	2 cut(s)	55, 98
BstMBI	GATC	3 cut(s)	333, 469, 568
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstNSI	RCATGY	1 cut(s)	581
BstPAI	GACNNNNGTC	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	88
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	333
BstYI	RGATCY	1 cut(s)	333
BstZ17I	GTATAC	1 cut(s)	564
BsuRI	GGCC	1 cut(s)	87
BtgZI	GCGATG	1 cut(s)	138
BtrI	CACGTC	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	421
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	3 cut(s)	436, 548, 578
CviJI	RGCY	7 cut(s)	87, 188, 366, 371, 428, 459, 623
CviKI_1	RGCY	7 cut(s)	87, 188, 366, 371, 428, 459, 623
CviQI	GTAC	1 cut(s)	309
DpnI	GATC	3 cut(s)	335, 471, 570
DpnII	GATC	3 cut(s)	333, 469, 568
DraI	TTTAAA	1 cut(s)	504
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	240
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	3 cut(s)	439, 551, 581
FatI	CATG	3 cut(s)	435, 547, 577
FauNDI	CATATG	1 cut(s)	598
FblI	GTMKAC	1 cut(s)	563
Fnu4HI	GCNGC	3 cut(s)	26, 77, 426
FokI	GGATG	1 cut(s)	428
Fsp4HI	GCNGC	3 cut(s)	26, 77, 426
FspBI	CTAG	2 cut(s)	47, 429
GluI	GCNGC	3 cut(s)	26, 77, 426
GsuI	CTGGAG	1 cut(s)	361
HaeIII	GGCC	1 cut(s)	87
Hin1II	CATG	3 cut(s)	439, 551, 581
HindIII	AAGCTT	1 cut(s)	186
HinfI	GANTC	3 cut(s)	43, 227, 235
HphI	GGTGA	1 cut(s)	585
Hpy166II	GTNNAC	1 cut(s)	564
Hpy188I	TCNGA	6 cut(s)	234, 259, 276, 296, 573, 637
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	1 cut(s)	564
HpyAV	CCTTC	2 cut(s)	98, 121
HpyCH4III	ACNGT	2 cut(s)	481, 591
HpyCH4IV	ACGT	3 cut(s)	207, 284, 348
HpyCH4V	TGCA	5 cut(s)	76, 131, 330, 402, 630
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
HpySE526I	ACGT	3 cut(s)	207, 284, 348
Hsp92II	CATG	3 cut(s)	439, 551, 581
Kzo9I	GATC	3 cut(s)	333, 469, 568
LmnI	GCTCC	2 cut(s)	432, 464
LpnPI	CCDG	3 cut(s)	69, 325, 591
Lsp1109I	GCAGC	1 cut(s)	88
MaeI	CTAG	2 cut(s)	47, 429
MaeII	ACGT	3 cut(s)	207, 284, 348
MaeIII	GTNAC	2 cut(s)	344, 591
MalI	GATC	3 cut(s)	335, 471, 570
MboI	GATC	3 cut(s)	333, 469, 568
MboII	GAAGA	7 cut(s)	90, 183, 186, 209, 236, 246, 451
MflI	RGATCY	1 cut(s)	333
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	4 cut(s)	277, 325, 445, 643
MlyI	GAGTC	1 cut(s)	37
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	3 cut(s)	64, 184, 613
MseI	TTAA	4 cut(s)	444, 483, 503, 642
MssI	GTTTAAAC	1 cut(s)	504
MwoI	GCNNNNNNNGC	1 cut(s)	336
NdeI	CATATG	1 cut(s)	598
NdeII	GATC	3 cut(s)	333, 469, 568
NlaIII	CATG	3 cut(s)	439, 551, 581
NlaIV	GGNNCC	1 cut(s)	460
NmuCI	GTSAC	1 cut(s)	591
NspI	RCATGY	1 cut(s)	581
PciI	ACATGT	1 cut(s)	577
PfeI	GAWTC	2 cut(s)	227, 235
PkrI	GCNGC	3 cut(s)	27, 78, 427
PleI	GAGTC	1 cut(s)	37
PmeI	GTTTAAAC	1 cut(s)	504
PpsI	GAGTC	1 cut(s)	37
PscI	ACATGT	1 cut(s)	577
PshAI	GACNNNNGTC	1 cut(s)	47
PshBI	ATTAAT	2 cut(s)	444, 642
PspN4I	GGNNCC	1 cut(s)	460
PsuI	RGATCY	1 cut(s)	333
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SaqAI	TTAA	4 cut(s)	444, 483, 503, 642
SatI	GCNGC	3 cut(s)	26, 77, 426
Sau3AI	GATC	3 cut(s)	333, 469, 568
SchI	GAGTC	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	363
SetI	ASST	6 cut(s)	14, 190, 210, 287, 351, 468
SmlI	CTYRAG	1 cut(s)	496
SmoI	CTYRAG	1 cut(s)	496
Sse9I	AATT	4 cut(s)	277, 325, 445, 643
SsiI	CCGC	2 cut(s)	26, 425
SspMI	CTAG	2 cut(s)	47, 429
TaaI	ACNGT	2 cut(s)	481, 591
TaiI	ACGT	3 cut(s)	210, 287, 351
TasI	AATT	4 cut(s)	277, 325, 445, 643
TatI	WGTACW	1 cut(s)	308
TauI	GCSGC	2 cut(s)	28, 428
TfiI	GAWTC	2 cut(s)	227, 235
Tru1I	TTAA	4 cut(s)	444, 483, 503, 642
Tru9I	TTAA	4 cut(s)	444, 483, 503, 642
TseFI	GTSAC	1 cut(s)	591
TseI	GCWGC	1 cut(s)	76
Tsp45I	GTSAC	1 cut(s)	591
TspDTI	ATGAA	4 cut(s)	133, 141, 452, 536
TspGWI	ACGGA	2 cut(s)	234, 240
VspI	ATTAAT	2 cut(s)	444, 642
XapI	RAATTY	1 cut(s)	277
XceI	RCATGY	1 cut(s)	581
XmiI	GTMKAC	1 cut(s)	563
XspI	CTAG	2 cut(s)	47, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.