Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001260

Physical Location & Seq

Genomic Coordinates Forward (+)

21035573 .. 21038740

Gene Structure 3168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G202300.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGCCAATTGACAACTCAAACACGTCTGATCGAGATACTGAGCCATTTGTGGAGGTTGATCCAACTGGGCGGTTTGGGCGGTATGATGATCTCCTTGGTCATGGTGCTGTGAAGAAGGTTTATAGGGCTTTTGATCAGGAGGAAGGTACAGAGGTGGCCTGGAATCAGGTCCGCTTGAGGACTTTCAGTGAAGATCCAACTCTCATAAACCGGCTTTACTCAGAGGTTAAGCTATTGAGCACATTGAAGAACAAGTATATCATTGTTTGTTACAGTGTTTGGAGGGATGAGGCGCACAACACTTTGAATTTCATCACTGAGGTGTGCACATCTGGAAACCTGAGGCAATACAGGAAGAAGCATCGCCATGTGTCTATTAGGGCTTTGAAGAAGTGGTCAAGACAGGTGCTTGAGGGATTGGAATACCTCCATACACATGAGCCATGCATCATTCACAGAGATCTCAATTGCAGCAACATCTTCATCAATGGGAACACTGCCCAGGTGAAAATTGGTGATCTGGGATTTGCAGCAATAGTTGGTAAGAACCATGAAGCGCATTCGATTATAGGGACACCTGAGTATATGGCACCTGAGCTATACGAGGAGGACTACACAGAGATGGTGGACATATACTCCTTTGGGATGTGCTTGCTGGAGATGGTGACAATGGAGATACCATACAGTGAATGTGACTCTGTTGCCAAGATATACAAGAAGGTCACGGCCGGTATTAAGCCTGAAGGCTTGAACAAGGTGACTGATCCAGAGGTGAAGGCGTTCATTGAGAAATCCATAGCCCAACCGAGGGCAAGACCTAGTGCCTCTGATCTTCTCAAGGACCCTTTCTTGTCTGAACCCAAATCCAATATTGAAGAGATTGAACAAATCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

299

Amino Acids

34.08

Weight (kDa)

5.56

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55560
fragaria_vesca	FvH4_3g22150 FvH4_6g41240
malus_domestica	MD03G1189000.v1.1 MD09G1121400.v1.1 MD11G1205200.v1.1 MD17G1112400.v1.1
prunus_persica	Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.4G232100_v2.0.a1 Prupe.4G232100_v2.0.a1
pyrus_communis	pycom03g14190 pycom03g14210 pycom09g04580 pycom11g17800 pycom17g10410
rosa_chinensis	RchiOBHm_Chr2g0156791 RchiOBHm_Chr5g0038001 RchiOBHm_Chr5g0038041 RchiOBHm_Chr5g0042541
rosa_laevigata	RLG00000020942 RLG00000034135
rosa_multiflora	Rmu_co8331393.1_g000001 Rmu_co8390513.1_g000001 Rmu_sc0002670.1_g000011 Rmu_sc0008149.1_g000008 Rmu_sc0008278.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038120 Rroxscaffold_1G00042890 Rroxscaffold_2G00092720
rosa_rugosa	Rorug02G0456200 Rorug05G0170100 Rorug05G0201300 Rorug05G0201400
rosa_samantha	Rh2AG521800 Rh2BG535200 Rh2CG506700 Rh2DG544200 Rh5BG261300 Rh5BG261600 Rh5BG291700 Rh5CG293600 Rh5CG323900 Rh5DG270500 Rh5DG270600 Rh5DG301500
rosa_wichuraiana	Rw2G043080 Rw5G023930 Rw5G024110 Rw5G024140 Rw5G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	589
AciI	CCGC	3 cut(s)	70, 79, 172
AclWI	GGATC	3 cut(s)	53, 188, 758
AcoI	YGGCCR	1 cut(s)	726
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	762
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	2 cut(s)	807, 808
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	6 cut(s)	247, 307, 388, 751, 875, 884
AjiI	CACGTC	1 cut(s)	24
AjnI	CCWGG	2 cut(s)	158, 501
AleI	CACNNNNGTG	1 cut(s)	320
AluBI	AGCT	2 cut(s)	232, 598
AluI	AGCT	2 cut(s)	232, 598
Alw21I	GWGCWC	2 cut(s)	242, 329
Alw44I	GTGCAC	1 cut(s)	325
AlwI	GGATC	3 cut(s)	53, 188, 758
AoxI	GGCC	2 cut(s)	156, 726
ApaLI	GTGCAC	1 cut(s)	325
ApeKI	GCWGC	2 cut(s)	471, 530
ApoI	RAATTY	1 cut(s)	307
Asp700I	GAANNNNTTC	1 cut(s)	779
AspLEI	GCGC	2 cut(s)	295, 559
AspS9I	GGNCC	2 cut(s)	169, 841
AsuHPI	GGTGA	5 cut(s)	517, 527, 676, 769, 784
AvaII	GGWCC	2 cut(s)	169, 841
AxyI	CCTNAGG	1 cut(s)	341
BaeGI	GKGCMC	1 cut(s)	329
BaeI	ACNNNNGTAYC	2 cut(s)	138, 171
BanI	GGYRCC	1 cut(s)	589
Bbv12I	GWGCWC	2 cut(s)	242, 329
BbvI	GCAGC	2 cut(s)	483, 542
BccI	CCATC	2 cut(s)	616, 655
BceAI	ACGGC	1 cut(s)	741
BciT130I	CCWGG	2 cut(s)	160, 503
BclI	TGATCA	1 cut(s)	133
BfaI	CTAG	1 cut(s)	819
BglII	AGATCT	1 cut(s)	460
BisI	GCNGC	2 cut(s)	472, 531
BlsI	GCNGC	2 cut(s)	473, 532
Bme1390I	CCNGG	2 cut(s)	160, 503
Bme18I	GGWCC	2 cut(s)	169, 841
BmgBI	CACGTC	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	169, 841
BmiI	GGNNCC	2 cut(s)	591, 843
BmrFI	CCNGG	2 cut(s)	160, 503
BmrI	ACTGGG	1 cut(s)	75
BmsI	GCATC	2 cut(s)	370, 456
BmuI	ACTGGG	1 cut(s)	75
BpmI	CTGGAG	1 cut(s)	677
Bpu10I	CCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	3 cut(s)	196, 431, 821
BsaJI	CCNNGG	3 cut(s)	94, 501, 806
BsaXI	ACNNNNNCTCC	2 cut(s)	620, 650
Bsc4I	CCNNNNNNNGG	2 cut(s)	807, 808
Bse118I	RCCGGY	2 cut(s)	210, 728
Bse1I	ACTGG	1 cut(s)	70
Bse21I	CCTNAGG	1 cut(s)	341
BseBI	CCWGG	2 cut(s)	160, 503
BseDI	CCNNGG	3 cut(s)	94, 501, 806
BseGI	GGATG	2 cut(s)	292, 651
BseLI	CCNNNNNNNGG	2 cut(s)	807, 808
BseMII	CTCAG	6 cut(s)	30, 234, 309, 332, 570, 585
BseNI	ACTGG	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	620
BseSI	GKGCMC	1 cut(s)	329
BseX3I	CGGCCG	1 cut(s)	726
BseXI	GCAGC	2 cut(s)	483, 542
Bsh1285I	CGRYCG	1 cut(s)	729
BshFI	GGCC	2 cut(s)	158, 728
BshNI	GGYRCC	1 cut(s)	589
BsiEI	CGRYCG	1 cut(s)	729
BsiHKAI	GWGCWC	2 cut(s)	242, 329
BsiSI	CCGG	2 cut(s)	211, 729
BslFI	GGGAC	1 cut(s)	586
BslI	CCNNNNNNNGG	2 cut(s)	807, 808
BsmFI	GGGAC	1 cut(s)	586
BsmI	GAATGC	1 cut(s)	559
BsnI	GGCC	2 cut(s)	158, 728
Bsp1286I	GDGCHC	2 cut(s)	242, 329
Bsp143I	GATC	9 cut(s)	28, 58, 88, 133, 193, 460, 517, 763, 829
BspACI	CCGC	3 cut(s)	70, 79, 172
BspANI	GGCC	2 cut(s)	158, 728
BspCNI	CTCAG	6 cut(s)	31, 233, 310, 333, 571, 586
BspLI	GGNNCC	2 cut(s)	591, 843
BspPI	GGATC	3 cut(s)	53, 188, 758
BspT107I	GGYRCC	1 cut(s)	589
BsrFI	RCCGGY	2 cut(s)	210, 728
BsrI	ACTGG	1 cut(s)	70
BssAI	RCCGGY	2 cut(s)	210, 728
BssECI	CCNNGG	3 cut(s)	94, 501, 806
BssMI	GATC	9 cut(s)	28, 58, 88, 133, 193, 460, 517, 763, 829
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	2 cut(s)	160, 503
Bst4CI	ACNGT	2 cut(s)	275, 686
Bst6I	CTCTTC	1 cut(s)	870
BstC8I	GCNNGC	1 cut(s)	653
BstDEI	CTNAG	6 cut(s)	39, 220, 318, 341, 579, 594
BstF5I	GGATG	2 cut(s)	292, 651
BstHHI	GCGC	2 cut(s)	295, 559
BstKTI	GATC	9 cut(s)	31, 61, 91, 136, 196, 463, 520, 766, 832
BstMBI	GATC	9 cut(s)	28, 58, 88, 133, 193, 460, 517, 763, 829
BstMCI	CGRYCG	1 cut(s)	729
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstNI	CCWGG	2 cut(s)	160, 503
BstSCI	CCNGG	2 cut(s)	158, 501
BstSLI	GKGCMC	1 cut(s)	329
BstV1I	GCAGC	2 cut(s)	483, 542
BstX2I	RGATCY	2 cut(s)	193, 460
BstYI	RGATCY	2 cut(s)	193, 460
BstZI	CGGCCG	1 cut(s)	726
Bsu36I	CCTNAGG	1 cut(s)	341
BsuRI	GGCC	2 cut(s)	158, 728
BtgZI	GCGATG	1 cut(s)	347
BtrI	CACGTC	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	292, 651
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	5 cut(s)	193, 280, 315, 495, 691
Cac8I	GCNNGC	1 cut(s)	653
CfoI	GCGC	2 cut(s)	295, 559
Cfr10I	RCCGGY	2 cut(s)	210, 728
Cfr13I	GGNCC	2 cut(s)	169, 841
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	5 cut(s)	101, 368, 437, 444, 551
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	6 cut(s)	39, 220, 318, 341, 579, 594
DpnI	GATC	9 cut(s)	30, 60, 90, 135, 195, 462, 519, 765, 831
DpnII	GATC	9 cut(s)	28, 58, 88, 133, 193, 460, 517, 763, 829
EaeI	YGGCCR	1 cut(s)	726
EagI	CGGCCG	1 cut(s)	726
Eam1104I	CTCTTC	1 cut(s)	870
EarI	CTCTTC	1 cut(s)	870
EclXI	CGGCCG	1 cut(s)	726
Eco130I	CCWWGG	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	169, 841
Eco52I	CGGCCG	1 cut(s)	726
Eco57I	CTGAAG	1 cut(s)	762
Eco81I	CCTNAGG	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	841
EcoRII	CCWGG	2 cut(s)	158, 501
EcoT14I	CCWWGG	1 cut(s)	94
EcoT22I	ATGCAT	1 cut(s)	449
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	5 cut(s)	104, 371, 440, 447, 554
FaqI	GGGAC	1 cut(s)	586
FatI	CATG	5 cut(s)	100, 367, 436, 443, 550
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	472, 531
FokI	GGATG	2 cut(s)	299, 658
Fsp4HI	GCNGC	2 cut(s)	472, 531
FspBI	CTAG	1 cut(s)	819
GlaI	GCGC	2 cut(s)	294, 558
GluI	GCNGC	2 cut(s)	472, 531
GsuI	CTGGAG	1 cut(s)	677
HaeIII	GGCC	2 cut(s)	158, 728
HapII	CCGG	2 cut(s)	211, 729
HhaI	GCGC	2 cut(s)	295, 559
Hin1II	CATG	5 cut(s)	104, 371, 440, 447, 554
Hin6I	GCGC	2 cut(s)	293, 557
HinP1I	GCGC	2 cut(s)	293, 557
HinfI	GANTC	2 cut(s)	163, 695
HpaII	CCGG	2 cut(s)	211, 729
HphI	GGTGA	5 cut(s)	517, 527, 676, 769, 784
Hpy166II	GTNNAC	2 cut(s)	327, 628
Hpy188I	TCNGA	5 cut(s)	28, 223, 829, 856, 896
Hpy188III	TCNNGA	5 cut(s)	32, 137, 333, 399, 767
Hpy8I	GTNNAC	2 cut(s)	327, 628
HpyAV	CCTTC	5 cut(s)	109, 137, 712, 737, 769
HpyCH4III	ACNGT	2 cut(s)	275, 686
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	4 cut(s)	327, 447, 471, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	6 cut(s)	39, 220, 318, 341, 579, 594
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	5 cut(s)	104, 371, 440, 447, 554
HspAI	GCGC	2 cut(s)	293, 557
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	9 cut(s)	28, 58, 88, 133, 193, 460, 517, 763, 829
Lsp1109I	GCAGC	2 cut(s)	483, 542
LweI	GCATC	2 cut(s)	370, 456
MaeI	CTAG	1 cut(s)	819
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	5 cut(s)	269, 664, 692, 721, 757
MalI	GATC	9 cut(s)	30, 60, 90, 135, 195, 462, 519, 765, 831
MboI	GATC	9 cut(s)	28, 58, 88, 133, 193, 460, 517, 763, 829
MboII	GAAGA	8 cut(s)	124, 203, 259, 367, 400, 472, 824, 887
MfeI	CAATTG	2 cut(s)	6, 466
MflI	RGATCY	2 cut(s)	193, 460
MhlI	GDGCHC	2 cut(s)	242, 329
MluCI	AATT	4 cut(s)	6, 307, 466, 510
MlyI	GAGTC	1 cut(s)	689
MmeI	TCCRAC	2 cut(s)	86, 221
Mph1103I	ATGCAT	1 cut(s)	449
MroXI	GAANNNNTTC	1 cut(s)	779
MseI	TTAA	2 cut(s)	228, 735
MslI	CAYNNNNRTG	4 cut(s)	320, 366, 435, 620
MspI	CCGG	2 cut(s)	211, 729
MspR9I	CCNGG	2 cut(s)	160, 503
MunI	CAATTG	2 cut(s)	6, 466
Mva1269I	GAATGC	1 cut(s)	559
MvaI	CCWGG	2 cut(s)	160, 503
MwoI	GCNNNNNNNGC	1 cut(s)	76
NdeII	GATC	9 cut(s)	28, 58, 88, 133, 193, 460, 517, 763, 829
NlaIII	CATG	5 cut(s)	104, 371, 440, 447, 554
NlaIV	GGNNCC	2 cut(s)	591, 843
NmuCI	GTSAC	4 cut(s)	664, 692, 721, 757
NsiI	ATGCAT	1 cut(s)	449
OliI	CACNNNNGTG	1 cut(s)	320
PctI	GAATGC	1 cut(s)	559
PdmI	GAANNNNTTC	1 cut(s)	779
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	473, 532
PleI	GAGTC	1 cut(s)	689
PpsI	GAGTC	1 cut(s)	689
PpuMI	RGGWCCY	1 cut(s)	841
Psp5II	RGGWCCY	1 cut(s)	841
Psp6I	CCWGG	2 cut(s)	158, 501
PspGI	CCWGG	2 cut(s)	158, 501
PspN4I	GGNNCC	2 cut(s)	591, 843
PspPI	GGNCC	2 cut(s)	169, 841
PspPPI	RGGWCCY	1 cut(s)	841
PsuI	RGATCY	2 cut(s)	193, 460
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
RseI	CAYNNNNRTG	4 cut(s)	320, 366, 435, 620
SaqAI	TTAA	2 cut(s)	228, 735
SatI	GCNGC	2 cut(s)	472, 531
Sau3AI	GATC	9 cut(s)	28, 58, 88, 133, 193, 460, 517, 763, 829
Sau96I	GGNCC	2 cut(s)	169, 841
SchI	GAGTC	1 cut(s)	689
ScrFI	CCNGG	2 cut(s)	160, 503
SduI	GDGCHC	2 cut(s)	242, 329
SfaNI	GCATC	2 cut(s)	370, 456
SinI	GGWCC	2 cut(s)	169, 841
SmiMI	CAYNNNNRTG	4 cut(s)	320, 366, 435, 620
SmlI	CTYRAG	3 cut(s)	175, 410, 836
SmoI	CTYRAG	3 cut(s)	175, 410, 836
Sse9I	AATT	4 cut(s)	6, 307, 466, 510
SsiI	CCGC	3 cut(s)	70, 79, 172
SspI	AATATT	1 cut(s)	871
SspMI	CTAG	1 cut(s)	819
StyD4I	CCNGG	2 cut(s)	158, 501
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	2 cut(s)	275, 686
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	2 cut(s)	31, 563
TasI	AATT	4 cut(s)	6, 307, 466, 510
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	2 cut(s)	228, 735
Tru9I	TTAA	2 cut(s)	228, 735
TscAI	CASTG	5 cut(s)	193, 280, 322, 502, 691
TseFI	GTSAC	4 cut(s)	664, 692, 721, 757
TseI	GCWGC	2 cut(s)	471, 530
Tsp45I	GTSAC	4 cut(s)	664, 692, 721, 757
TspDTI	ATGAA	4 cut(s)	301, 472, 567, 772
TspRI	CASTG	5 cut(s)	193, 280, 322, 502, 691
VneI	GTGCAC	1 cut(s)	325
VpaK11BI	GGWCC	2 cut(s)	169, 841
XapI	RAATTY	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	509
XmnI	GAANNNNTTC	1 cut(s)	779
XspI	CTAG	1 cut(s)	819
Zsp2I	ATGCAT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.