Rw5G026670

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
38661959 .. 38670186
8228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G026670.1

Sequence Viewer

Length: 1056 bp
ATGGAGCCACCCAGTTCTGAAAGTGAAGAAGCATTGGAAGGATTCAAATATGTGATGAAGGATGGTACTCAGGTGGTGGCCGAGGCTGTATCGGATCACCACACAATCAACCGTTGCCTCCACCTCATAACCAAGAAAATTCGTGACAAGAAAGACATGTGTCGGATGCCGAGTGAAGGTGCAGACCAGTCGGAGGGAGACAGCGAACCCTTCGTCGAAATAGACCCAACCCAGCGGTACGGCCGTTACGACGAGCTACTGGGTTCCGGCGCAGTCAAAAAGGTGTACCGAGCTTTTGATCAAGAAGAGGGCATAGAGGTGGCATGGAACCAGGTTAAACTGAGTAACTTCATCAACGATTCCGCCATGACCGAAAGGCTTTACTCTGAGGTTCGGTTGCTGAAGTCCCTGAAGAACAAAAACATCATTGCTTTGCATAACGTGTGGAGAGACGAGGAGAAAAACATTCTGAATTTCATGACTGAGGTTTGTAACAGTGGGAATCTGAGGGAGTACAGGAAGAAGCACAAGAACGTTTCGATGAAGGCCTTGAAGAAGTGGTCGTTTCAGATCTTGAAAGGGTTGGAGTATTTGCATACGCATGAGCCCTGTGTGATTCATAGAGATCTCAATTGCAGCAATGTGTTTGTCAACGGGAATCTTGGCCAGGTGAAGATTGGTGACTTGGGACTGGCTGCTATAGTAGGGAAGACTCACTCAGCTCATTCAGTGCTAGGCACACCAGAATTTATGGCACCGGAGCTTTATGAAGAGCATTACACTGAAATGGTGGACATATACTCATTTGGAATGTGTGTACTAGAGATGGTGACCTTGGAAATGCCCTACGGCGAATGCGACAATATTGCCAAAATATACAAGAAGGTAACCTCCGGGGTCAGACCTCAGGCCTTGAACAAGATCAAGGACCCGAAGGTGAGGGCATTTGTCGAGAGGTGCCTTGCACAACCTAGGGCGAGACCCTCTGCAACCGAACTCCTCAAGGACCCGTTCTTTGATGAGGTTGATGACGACGACGATGACGAAAATAATTAA

Protein Analysis

351

Amino Acids

40.06

Weight (kDa)

5.49

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 84 - 339 2.7e-51 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 84 - 335 5.6e-38 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 754, 957
AciI CCGC 2 cut(s) 235, 363
AclI AACGTT 1 cut(s) 534
AclWI GGATC 1 cut(s) 102
AcoI YGGCCR 3 cut(s) 78, 241, 664
AcsI RAATTY 3 cut(s) 138, 472, 746
AcuI CTGAAG 2 cut(s) 422, 431
AfaI GTAC 5 cut(s) 67, 239, 287, 515, 819
AfiI CCNNNNNNNGG 2 cut(s) 176, 193
AflIII ACRYGT 2 cut(s) 156, 441
AgsI TTSAA 4 cut(s) 46, 553, 577, 916
AjnI CCWGG 2 cut(s) 330, 666
AluBI AGCT 4 cut(s) 256, 293, 722, 763
AluI AGCT 4 cut(s) 256, 293, 722, 763
Alw26I GTCTC 3 cut(s) 192, 444, 973
AlwI GGATC 1 cut(s) 102
AoxI GGCC 5 cut(s) 78, 241, 546, 664, 909
ApeKI GCWGC 2 cut(s) 636, 695
ApoI RAATTY 3 cut(s) 138, 472, 746
ArsI GACNNNNNNTTYG 4 cut(s) 198, 230, 998, 1030
AspA2I CCTAGG 1 cut(s) 971
AspLEI GCGC 1 cut(s) 272
AspS9I GGNCC 2 cut(s) 928, 1006
AsuC2I CCSGG 1 cut(s) 895
AsuHPI GGTGA 5 cut(s) 89, 682, 692, 841, 949
AvaII GGWCC 2 cut(s) 928, 1006
AvrII CCTAGG 1 cut(s) 971
AxyI CCTNAGG 1 cut(s) 906
BaeI ACNNNNGTAYC 4 cut(s) 57, 90, 229, 262
BalI TGGCCA 1 cut(s) 666
BanI GGYRCC 2 cut(s) 754, 957
BanII GRGCYC 1 cut(s) 609
BbsI GAAGAC 1 cut(s) 716
BbvI GCAGC 2 cut(s) 648, 682
BccI CCATC 2 cut(s) 56, 820
BceAI ACGGC 3 cut(s) 228, 256, 865
BcgI CGANNNNNNTGC 4 cut(s) 171, 205, 848, 882
BciT130I CCWGG 2 cut(s) 332, 668
BclI TGATCA 1 cut(s) 298
BcnI CCSGG 1 cut(s) 895
BcoDI GTCTC 3 cut(s) 192, 444, 973
BfaI CTAG 3 cut(s) 734, 821, 972
BfmI CTRYAG 1 cut(s) 699
BglII AGATCT 2 cut(s) 570, 625
BisI GCNGC 2 cut(s) 637, 696
BlnI CCTAGG 1 cut(s) 971
BlsI GCNGC 2 cut(s) 638, 697
Bme1390I CCNGG 3 cut(s) 332, 668, 895
Bme18I GGWCC 2 cut(s) 928, 1006
BmgT120I GGNCC 2 cut(s) 928, 1006
BmiI GGNNCC 7 cut(s) 6, 265, 329, 756, 930, 959, 1008
BmrFI CCNGG 3 cut(s) 332, 668, 895
BmrI ACTGGG 2 cut(s) 6, 269
BmsI GCATC 1 cut(s) 156
BmuI ACTGGG 2 cut(s) 6, 269
BoxI GACNNNNGTC 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 716
BpuEI CTTGAG 1 cut(s) 986
BpuMI CCSGG 1 cut(s) 895
BsaI GGTCTC 1 cut(s) 973
BsaJI CCNNGG 4 cut(s) 81, 834, 894, 971
BsaWI WCCGGW 1 cut(s) 757
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 193
Bse1I ACTGG 4 cut(s) 12, 187, 264, 696
Bse21I CCTNAGG 1 cut(s) 906
Bse3DI GCAATG 2 cut(s) 426, 646
BseBI CCWGG 2 cut(s) 332, 668
BseDI CCNNGG 4 cut(s) 81, 834, 894, 971
BseGI GGATG 2 cut(s) 67, 171
BseLI CCNNNNNNNGG 2 cut(s) 176, 193
BseMI GCAATG 2 cut(s) 426, 646
BseMII CTCAG 7 cut(s) 83, 332, 378, 474, 497, 732, 920
BseNI ACTGG 4 cut(s) 12, 187, 264, 696
BseRI GAGGAG 2 cut(s) 470, 989
BseX3I CGGCCG 1 cut(s) 241
BseXI GCAGC 2 cut(s) 648, 682
BseYI CCCAGC 1 cut(s) 231
BsgI GTGCAG 1 cut(s) 201
Bsh1285I CGRYCG 1 cut(s) 244
BshFI GGCC 5 cut(s) 80, 243, 548, 666, 911
BshNI GGYRCC 2 cut(s) 754, 957
BsiEI CGRYCG 1 cut(s) 244
BsiSI CCGG 3 cut(s) 267, 758, 894
BslFI GGGAC 2 cut(s) 391, 702
BslI CCNNNNNNNGG 2 cut(s) 176, 193
BsmAI GTCTC 3 cut(s) 192, 444, 973
BsmBI CGTCTC 1 cut(s) 444
BsmFI GGGAC 2 cut(s) 391, 702
BsmI GAATGC 1 cut(s) 860
BsnI GGCC 5 cut(s) 80, 243, 548, 666, 911
Bso31I GGTCTC 1 cut(s) 973
Bsp1286I GDGCHC 1 cut(s) 609
Bsp143I GATC 5 cut(s) 94, 298, 570, 625, 921
BspACI CCGC 2 cut(s) 235, 363
BspANI GGCC 5 cut(s) 80, 243, 548, 666, 911
BspCNI CTCAG 7 cut(s) 82, 333, 379, 475, 498, 731, 919
BspHI TCATGA 1 cut(s) 477
BspLI GGNNCC 7 cut(s) 6, 265, 329, 756, 930, 959, 1008
BspPI GGATC 1 cut(s) 102
BspQI GCTCTTC 1 cut(s) 765
BspT107I GGYRCC 2 cut(s) 754, 957
BspTNI GGTCTC 1 cut(s) 973
BsrDI GCAATG 2 cut(s) 426, 646
BsrI ACTGG 4 cut(s) 12, 187, 264, 696
BssECI CCNNGG 4 cut(s) 81, 834, 894, 971
BssMI GATC 5 cut(s) 94, 298, 570, 625, 921
BssT1I CCWWGG 2 cut(s) 834, 971
Bst2UI CCWGG 2 cut(s) 332, 668
Bst4CI ACNGT 2 cut(s) 113, 497
Bst6I CTCTTC 2 cut(s) 300, 765
BstDEI CTNAG 7 cut(s) 69, 341, 387, 483, 506, 718, 906
BstEII GGTNACC 2 cut(s) 829, 886
BstF5I GGATG 2 cut(s) 67, 171
BstHHI GCGC 1 cut(s) 272
BstKTI GATC 5 cut(s) 97, 301, 573, 628, 924
BstMAI GTCTC 3 cut(s) 192, 444, 973
BstMBI GATC 5 cut(s) 94, 298, 570, 625, 921
BstMCI CGRYCG 1 cut(s) 244
BstNI CCWGG 2 cut(s) 332, 668
BstNSI RCATGY 1 cut(s) 160
BstPAI GACNNNNGTC 1 cut(s) 159
BstPI GGTNACC 2 cut(s) 829, 886
BstSCI CCNGG 3 cut(s) 330, 666, 893
BstSFI CTRYAG 1 cut(s) 699
BstV1I GCAGC 2 cut(s) 648, 682
BstV2I GAAGAC 1 cut(s) 716
BstX2I RGATCY 2 cut(s) 570, 625
BstYI RGATCY 2 cut(s) 570, 625
BstZI CGGCCG 1 cut(s) 241
Bsu36I CCTNAGG 1 cut(s) 906
BsuRI GGCC 5 cut(s) 80, 243, 548, 666, 911
BtsCI GGATG 2 cut(s) 67, 171
BtsIMutI CAGTG 3 cut(s) 502, 735, 780
CciI TCATGA 1 cut(s) 477
CfoI GCGC 1 cut(s) 272
Cfr13I GGNCC 2 cut(s) 928, 1006
CsiI ACCWGGT 1 cut(s) 330
Csp6I GTAC 5 cut(s) 66, 238, 286, 514, 818
CviAII CATG 5 cut(s) 157, 324, 367, 478, 602
CviQI GTAC 5 cut(s) 66, 238, 286, 514, 818
DdeI CTNAG 7 cut(s) 69, 341, 387, 483, 506, 718, 906
DpnI GATC 5 cut(s) 96, 300, 572, 627, 923
DpnII GATC 5 cut(s) 94, 298, 570, 625, 921
EaeI YGGCCR 3 cut(s) 78, 241, 664
EagI CGGCCG 1 cut(s) 241
Eam1104I CTCTTC 2 cut(s) 300, 765
EarI CTCTTC 2 cut(s) 300, 765
EciI GGCGGA 1 cut(s) 352
EclXI CGGCCG 1 cut(s) 241
Eco130I CCWWGG 2 cut(s) 834, 971
Eco147I AGGCCT 2 cut(s) 548, 911
Eco24I GRGCYC 1 cut(s) 609
Eco31I GGTCTC 1 cut(s) 973
Eco47I GGWCC 2 cut(s) 928, 1006
Eco52I CGGCCG 1 cut(s) 241
Eco57I CTGAAG 2 cut(s) 422, 431
Eco81I CCTNAGG 1 cut(s) 906
Eco91I GGTNACC 2 cut(s) 829, 886
EcoO109I RGGNCCY 2 cut(s) 928, 1006
EcoO65I GGTNACC 2 cut(s) 829, 886
EcoRII CCWGG 2 cut(s) 330, 666
EcoT14I CCWWGG 2 cut(s) 834, 971
EcoT38I GRGCYC 1 cut(s) 609
ErhI CCWWGG 2 cut(s) 834, 971
Esp3I CGTCTC 1 cut(s) 444
FaeI CATG 5 cut(s) 160, 327, 370, 481, 605
FaqI GGGAC 2 cut(s) 391, 702
FatI CATG 5 cut(s) 156, 323, 366, 477, 601
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 2 cut(s) 637, 696
FokI GGATG 2 cut(s) 74, 178
FriOI GRGCYC 1 cut(s) 609
Fsp4HI GCNGC 2 cut(s) 637, 696
FspBI CTAG 3 cut(s) 734, 821, 972
GlaI GCGC 1 cut(s) 271
GluI GCNGC 2 cut(s) 637, 696
GsaI CCCAGC 1 cut(s) 235
HaeIII GGCC 5 cut(s) 80, 243, 548, 666, 911
HapII CCGG 3 cut(s) 267, 758, 894
HhaI GCGC 1 cut(s) 272
Hin1II CATG 5 cut(s) 160, 327, 370, 481, 605
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HincII GTYRAC 1 cut(s) 652
HindII GTYRAC 1 cut(s) 652
HinfI GANTC 6 cut(s) 42, 359, 502, 616, 658, 712
HpaII CCGG 3 cut(s) 267, 758, 894
HphI GGTGA 5 cut(s) 89, 682, 692, 841, 949
Hpy166II GTNNAC 4 cut(s) 286, 652, 793, 818
Hpy188I TCNGA 9 cut(s) 19, 94, 165, 193, 388, 471, 507, 570, 902
Hpy188III TCNNGA 5 cut(s) 143, 302, 478, 574, 952
Hpy8I GTNNAC 4 cut(s) 286, 652, 793, 818
Hpy99I CGWCG 4 cut(s) 218, 254, 1037, 1040
HpyAV CCTTC 7 cut(s) 32, 52, 170, 220, 538, 877, 928
HpyCH4III ACNGT 2 cut(s) 113, 497
HpyCH4IV ACGT 2 cut(s) 441, 534
HpyCH4V TGCA 6 cut(s) 182, 436, 595, 636, 965, 989
HpyF3I CTNAG 7 cut(s) 69, 341, 387, 483, 506, 718, 906
HpySE526I ACGT 2 cut(s) 441, 534
Hsp92II CATG 5 cut(s) 160, 327, 370, 481, 605
HspAI GCGC 1 cut(s) 270
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 5 cut(s) 94, 298, 570, 625, 921
LguI GCTCTTC 1 cut(s) 765
LmnI GCTCC 2 cut(s) 4, 760
Lsp1109I GCAGC 2 cut(s) 648, 682
LweI GCATC 1 cut(s) 156
MabI ACCWGGT 1 cut(s) 330
MaeI CTAG 3 cut(s) 734, 821, 972
MaeII ACGT 2 cut(s) 441, 534
MaeIII GTNAC 7 cut(s) 143, 245, 344, 491, 680, 829, 886
MalI GATC 5 cut(s) 96, 300, 572, 627, 923
MboI GATC 5 cut(s) 94, 298, 570, 625, 921
MboII GAAGA 8 cut(s) 38, 317, 424, 532, 565, 685, 721, 782
MfeI CAATTG 1 cut(s) 631
MflI RGATCY 2 cut(s) 570, 625
MhlI GDGCHC 1 cut(s) 609
MlsI TGGCCA 1 cut(s) 666
MluCI AATT 5 cut(s) 138, 472, 631, 746, 1051
MluNI TGGCCA 1 cut(s) 666
MlyI GAGTC 1 cut(s) 706
MmeI TCCRAC 3 cut(s) 143, 171, 564
Mox20I TGGCCA 1 cut(s) 666
MscI TGGCCA 1 cut(s) 666
MseI TTAA 2 cut(s) 336, 1054
MslI CAYNNNNRTG 3 cut(s) 317, 600, 785
Msp20I TGGCCA 1 cut(s) 666
MspA1I CMGCKG 1 cut(s) 235
MspI CCGG 3 cut(s) 267, 758, 894
MspR9I CCNGG 3 cut(s) 332, 668, 895
MunI CAATTG 1 cut(s) 631
Mva1269I GAATGC 1 cut(s) 860
MvaI CCWGG 2 cut(s) 332, 668
NciI CCSGG 1 cut(s) 895
NdeII GATC 5 cut(s) 94, 298, 570, 625, 921
NlaIII CATG 5 cut(s) 160, 327, 370, 481, 605
NlaIV GGNNCC 7 cut(s) 6, 265, 329, 756, 930, 959, 1008
NmeAIII GCCGAG 2 cut(s) 106, 195
NmuCI GTSAC 3 cut(s) 143, 680, 829
NspI RCATGY 1 cut(s) 160
PagI TCATGA 1 cut(s) 477
PceI AGGCCT 2 cut(s) 548, 911
PciI ACATGT 1 cut(s) 156
PciSI GCTCTTC 1 cut(s) 765
PcsI WCGNNNNNNNCGW 3 cut(s) 246, 855, 1041
PctI GAATGC 1 cut(s) 860
PfeI GAWTC 5 cut(s) 42, 359, 502, 616, 658
PkrI GCNGC 2 cut(s) 638, 697
PleI GAGTC 1 cut(s) 706
PpsI GAGTC 1 cut(s) 706
PpuMI RGGWCCY 2 cut(s) 928, 1006
PscI ACATGT 1 cut(s) 156
PshAI GACNNNNGTC 1 cut(s) 159
Psp1406I AACGTT 1 cut(s) 534
Psp5II RGGWCCY 2 cut(s) 928, 1006
Psp6I CCWGG 2 cut(s) 330, 666
PspEI GGTNACC 2 cut(s) 829, 886
PspFI CCCAGC 1 cut(s) 231
PspGI CCWGG 2 cut(s) 330, 666
PspN4I GGNNCC 7 cut(s) 6, 265, 329, 756, 930, 959, 1008
PspPI GGNCC 2 cut(s) 928, 1006
PspPPI RGGWCCY 2 cut(s) 928, 1006
PsuI RGATCY 2 cut(s) 570, 625
RsaI GTAC 5 cut(s) 67, 239, 287, 515, 819
RsaNI GTAC 5 cut(s) 66, 238, 286, 514, 818
RseI CAYNNNNRTG 3 cut(s) 317, 600, 785
SapI GCTCTTC 1 cut(s) 765
SaqAI TTAA 2 cut(s) 336, 1054
SatI GCNGC 2 cut(s) 637, 696
Sau3AI GATC 5 cut(s) 94, 298, 570, 625, 921
Sau96I GGNCC 2 cut(s) 928, 1006
SchI GAGTC 1 cut(s) 706
ScrFI CCNGG 3 cut(s) 332, 668, 895
SduI GDGCHC 1 cut(s) 609
SexAI ACCWGGT 1 cut(s) 330
SfaNI GCATC 1 cut(s) 156
SfcI CTRYAG 1 cut(s) 699
SinI GGWCC 2 cut(s) 928, 1006
SmiMI CAYNNNNRTG 3 cut(s) 317, 600, 785
SmlI CTYRAG 1 cut(s) 1001
SmoI CTYRAG 1 cut(s) 1001
Sse9I AATT 5 cut(s) 138, 472, 631, 746, 1051
SseBI AGGCCT 2 cut(s) 548, 911
SsiI CCGC 2 cut(s) 235, 363
SspI AATATT 1 cut(s) 865
SspMI CTAG 3 cut(s) 734, 821, 972
StuI AGGCCT 2 cut(s) 548, 911
StyD4I CCNGG 3 cut(s) 330, 666, 893
StyI CCWWGG 2 cut(s) 834, 971
TaaI ACNGT 2 cut(s) 113, 497
TaiI ACGT 2 cut(s) 444, 537
TaqI TCGA 3 cut(s) 216, 539, 951
TaqII GACCGA 1 cut(s) 386
TasI AATT 5 cut(s) 138, 472, 631, 746, 1051
TatI WGTACW 2 cut(s) 513, 817
TfiI GAWTC 5 cut(s) 42, 359, 502, 616, 658
Tru1I TTAA 2 cut(s) 336, 1054
Tru9I TTAA 2 cut(s) 336, 1054
TscAI CASTG 3 cut(s) 502, 735, 787
TseFI GTSAC 3 cut(s) 143, 680, 829
TseI GCWGC 2 cut(s) 636, 695
Tsp45I GTSAC 3 cut(s) 143, 680, 829
TspDTI ATGAA 6 cut(s) 71, 340, 466, 557, 608, 783
TspRI CASTG 3 cut(s) 502, 735, 787
VpaK11BI GGWCC 2 cut(s) 928, 1006
XapI RAATTY 3 cut(s) 138, 472, 746
XceI RCATGY 1 cut(s) 160
XcmI CCANNNNNNNNNTGG 1 cut(s) 674
XmaJI CCTAGG 1 cut(s) 971
XspI CTAG 3 cut(s) 734, 821, 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.