Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001260

Physical Location & Seq

Genomic Coordinates Forward (+)

29995919 .. 29997839

Gene Structure 1921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1205200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGATGCCGAGTGAAAACGAAGATCAGTCGGACAAAGAACCATTCATCGAAATTGACCCAACAGGGCGCTACGGTCGGTACAACGAGCTCCTAGGGTGCGGGGCTGTTAAAAAGGTGTACCGGGCTTTCGATCAAGAGGAGGGCATAGAGGTGGCATGGAACCAAGTGAAGCTACGTAACTTCACGAACGATCCTGCTATGATTGAAAGGCTCTACTCTGAGGTTCGGCTTCTCAGGTCGTTGATGAACAAGAACATCATCACTTTGTACAATGTGTGGCGGGACGCTGAGCATAACACGCTCAATTTCATGACTGAGGTTTGTACAAATGGGAATTTGAGGGAGTACAGGAAGAAGCATAAGCATGTTTCGATGAAGGCCTTGAAGAAGTGGTCAAAACAGATCTTGGAAGGGCTGGAGTATTTGCATACTCACGAACCTTGTGTTATTCATAGAGATCTCAATTGCAGCAATGTATTTATCAATGGGAATGTTGGCCAGGTGAAGATTGGTGATTTGGGATTGGCTGCTATAGTGGGAAAGAACCATTCAGCACATTCGGTGTTAGGGACTCCAGAATTTATGGCGCCAGAGCTGTATGAAGAAGATTACACTGAGATGGTGGACATCTACTCATTTGGTATGTGTGTGCTTGAGATGGTAACCTTGGAAATACCCTATAGTGAATGTGACAATGTTGCAAAAATATATAAGAAGGTATCCTCAGGAGTAAGACCCCAGGCCTTGAACAAAATCAAAGACCCGGAGGTGAGGGTGTTTGTTGAGAAGTGCCTCGCCCAGCCTAGAGCGAGGCCTTCCGCTACTGAACTTCTCAAGGATCCCTTCTTTTATGAAGTTGAAGGTGACGATAATGACGGAGACGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

296

Amino Acids

33.85

Weight (kDa)

5.4

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	28 - 283	2e-52	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	28 - 279	4.8e-37	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55560
fragaria_vesca	FvH4_3g22150 FvH4_6g41240
malus_domestica	MD03G1189000.v1.1 MD09G1121400.v1.1 MD11G1205200.v1.1 MD17G1112400.v1.1
prunus_persica	Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.4G232100_v2.0.a1 Prupe.4G232100_v2.0.a1
pyrus_communis	pycom03g14190 pycom03g14210 pycom09g04580 pycom11g17800 pycom17g10410
rosa_chinensis	RchiOBHm_Chr2g0156791 RchiOBHm_Chr5g0038001 RchiOBHm_Chr5g0038041 RchiOBHm_Chr5g0042541
rosa_laevigata	RLG00000020942 RLG00000034135
rosa_multiflora	Rmu_co8331393.1_g000001 Rmu_co8390513.1_g000001 Rmu_sc0002670.1_g000011 Rmu_sc0008149.1_g000008 Rmu_sc0008278.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038120 Rroxscaffold_1G00042890 Rroxscaffold_2G00092720
rosa_rugosa	Rorug02G0456200 Rorug05G0170100 Rorug05G0201300 Rorug05G0201400
rosa_samantha	Rh2AG521800 Rh2BG535200 Rh2CG506700 Rh2DG544200 Rh5BG261300 Rh5BG261600 Rh5BG291700 Rh5CG293600 Rh5CG323900 Rh5DG270500 Rh5DG270600 Rh5DG301500
rosa_wichuraiana	Rw2G043080 Rw5G023930 Rw5G024110 Rw5G024140 Rw5G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	586
AciI	CCGC	3 cut(s)	99, 280, 819
AclWI	GGATC	3 cut(s)	185, 833, 846
AcoI	YGGCCR	1 cut(s)	496
AcsI	RAATTY	2 cut(s)	334, 578
AcyI	GRCGYC	1 cut(s)	587
AfaI	GTAC	5 cut(s)	80, 119, 269, 325, 347
AgsI	TTSAA	4 cut(s)	206, 385, 748, 860
AjnI	CCWGG	2 cut(s)	498, 738
AluBI	AGCT	3 cut(s)	88, 172, 595
AluI	AGCT	3 cut(s)	88, 172, 595
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	873
AlwI	GGATC	3 cut(s)	185, 833, 846
AoxI	GGCC	4 cut(s)	378, 496, 741, 812
ApeKI	GCWGC	2 cut(s)	468, 527
ApoI	RAATTY	2 cut(s)	334, 578
AspA2I	CCTAGG	1 cut(s)	91
AspLEI	GCGC	2 cut(s)	69, 589
AsuC2I	CCSGG	2 cut(s)	122, 764
AsuHPI	GGTGA	4 cut(s)	514, 524, 781, 875
AvrII	CCTAGG	1 cut(s)	91
AxyI	CCTNAGG	1 cut(s)	724
BalI	TGGCCA	1 cut(s)	498
BamHI	GGATCC	1 cut(s)	838
BanI	GGYRCC	1 cut(s)	586
BanII	GRGCYC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	480, 514
BccI	CCATC	2 cut(s)	613, 652
BciT130I	CCWGG	2 cut(s)	500, 740
BciVI	GTATCC	1 cut(s)	730
BcnI	CCSGG	2 cut(s)	122, 764
BcoDI	GTCTC	1 cut(s)	873
BfaI	CTAG	2 cut(s)	92, 804
BfmI	CTRYAG	2 cut(s)	531, 679
BfoI	RGCGCY	2 cut(s)	70, 590
BfuI	GTATCC	1 cut(s)	730
BglII	AGATCT	2 cut(s)	402, 457
BisI	GCNGC	2 cut(s)	469, 528
BlnI	CCTAGG	1 cut(s)	91
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	2 cut(s)	470, 529
Bme1390I	CCNGG	4 cut(s)	122, 500, 740, 764
BmiI	GGNNCC	3 cut(s)	161, 588, 840
BmrFI	CCNGG	4 cut(s)	122, 500, 740, 764
BpmI	CTGGAG	2 cut(s)	437, 558
Bpu1102I	GCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	2 cut(s)	674, 818
BpuMI	CCSGG	2 cut(s)	122, 764
BsaAI	YACGTR	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	587
BsaJI	CCNNGG	3 cut(s)	91, 666, 738
Bse21I	CCTNAGG	1 cut(s)	724
Bse3DI	GCAATG	1 cut(s)	478
BseBI	CCWGG	2 cut(s)	500, 740
BseDI	CCNNGG	3 cut(s)	91, 666, 738
BseMI	GCAATG	1 cut(s)	478
BseMII	CTCAG	6 cut(s)	210, 247, 279, 306, 606, 738
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	2 cut(s)	480, 514
BseYI	CCCAGC	1 cut(s)	798
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	4 cut(s)	380, 498, 743, 814
BshNI	GGYRCC	1 cut(s)	586
BsiEI	CGRYCG	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	2 cut(s)	121, 764
BslFI	GGGAC	2 cut(s)	296, 583
BsmAI	GTCTC	1 cut(s)	873
BsmBI	CGTCTC	1 cut(s)	873
BsmFI	GGGAC	2 cut(s)	296, 583
BsnI	GGCC	4 cut(s)	380, 498, 743, 814
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp1407I	TGTACA	2 cut(s)	267, 323
Bsp143I	GATC	6 cut(s)	22, 130, 190, 402, 457, 838
Bsp1720I	GCTNAGC	1 cut(s)	288
BspACI	CCGC	3 cut(s)	99, 280, 819
BspANI	GGCC	4 cut(s)	380, 498, 743, 814
BspCNI	CTCAG	6 cut(s)	211, 246, 280, 307, 607, 737
BspHI	TCATGA	1 cut(s)	309
BspLI	GGNNCC	3 cut(s)	161, 588, 840
BspPI	GGATC	3 cut(s)	185, 833, 846
BspT107I	GGYRCC	1 cut(s)	586
BsrDI	GCAATG	1 cut(s)	478
BsrGI	TGTACA	2 cut(s)	267, 323
BssECI	CCNNGG	3 cut(s)	91, 666, 738
BssMI	GATC	6 cut(s)	22, 130, 190, 402, 457, 838
BssNI	GRCGYC	1 cut(s)	587
BssT1I	CCWWGG	2 cut(s)	91, 666
Bst2UI	CCWGG	2 cut(s)	500, 740
Bst4CI	ACNGT	1 cut(s)	74
BstACI	GRCGYC	1 cut(s)	587
BstAUI	TGTACA	2 cut(s)	267, 323
BstBAI	YACGTR	1 cut(s)	176
BstDEI	CTNAG	6 cut(s)	219, 233, 288, 315, 615, 724
BstEII	GGTNACC	1 cut(s)	661
BstH2I	RGCGCY	2 cut(s)	70, 590
BstHHI	GCGC	2 cut(s)	69, 589
BstKTI	GATC	6 cut(s)	25, 133, 193, 405, 460, 841
BstMAI	GTCTC	1 cut(s)	873
BstMBI	GATC	6 cut(s)	22, 130, 190, 402, 457, 838
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstNI	CCWGG	2 cut(s)	500, 740
BstNSI	RCATGY	1 cut(s)	368
BstPI	GGTNACC	1 cut(s)	661
BstSCI	CCNGG	4 cut(s)	120, 498, 738, 762
BstSFI	CTRYAG	2 cut(s)	531, 679
BstSNI	TACGTA	1 cut(s)	176
BstV1I	GCAGC	2 cut(s)	480, 514
BstX2I	RGATCY	3 cut(s)	402, 457, 838
BstYI	RGATCY	3 cut(s)	402, 457, 838
Bsu36I	CCTNAGG	1 cut(s)	724
BsuI	GTATCC	1 cut(s)	730
BsuRI	GGCC	4 cut(s)	380, 498, 743, 814
BtsIMutI	CAGTG	1 cut(s)	612
CciI	TCATGA	1 cut(s)	309
CfoI	GCGC	2 cut(s)	69, 589
CseI	GACGC	1 cut(s)	293
Csp6I	GTAC	5 cut(s)	79, 118, 268, 324, 346
CviAII	CATG	3 cut(s)	156, 310, 365
CviQI	GTAC	5 cut(s)	79, 118, 268, 324, 346
DdeI	CTNAG	6 cut(s)	219, 233, 288, 315, 615, 724
DinI	GGCGCC	1 cut(s)	588
DpnI	GATC	6 cut(s)	24, 132, 192, 404, 459, 840
DpnII	GATC	6 cut(s)	22, 130, 190, 402, 457, 838
EaeI	YGGCCR	1 cut(s)	496
Ecl136II	GAGCTC	1 cut(s)	88
Eco105I	TACGTA	1 cut(s)	176
Eco130I	CCWWGG	2 cut(s)	91, 666
Eco147I	AGGCCT	3 cut(s)	380, 743, 814
Eco24I	GRGCYC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	88
Eco81I	CCTNAGG	1 cut(s)	724
Eco91I	GGTNACC	1 cut(s)	661
EcoICRI	GAGCTC	1 cut(s)	88
EcoO65I	GGTNACC	1 cut(s)	661
EcoRII	CCWGG	2 cut(s)	498, 738
EcoT14I	CCWWGG	2 cut(s)	91, 666
EcoT38I	GRGCYC	1 cut(s)	90
EgeI	GGCGCC	1 cut(s)	588
EheI	GGCGCC	1 cut(s)	588
ErhI	CCWWGG	2 cut(s)	91, 666
Esp3I	CGTCTC	1 cut(s)	873
FaeI	CATG	3 cut(s)	159, 313, 368
FalI	AAGNNNNNCTT	2 cut(s)	827, 859
FaqI	GGGAC	2 cut(s)	296, 583
FatI	CATG	3 cut(s)	155, 309, 364
FauI	CCCGC	2 cut(s)	92, 273
Fnu4HI	GCNGC	2 cut(s)	469, 528
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	2 cut(s)	469, 528
FspBI	CTAG	2 cut(s)	92, 804
GlaI	GCGC	2 cut(s)	68, 588
GluI	GCNGC	2 cut(s)	469, 528
GsaI	CCCAGC	1 cut(s)	802
GsuI	CTGGAG	2 cut(s)	437, 558
HaeII	RGCGCY	2 cut(s)	70, 590
HaeIII	GGCC	4 cut(s)	380, 498, 743, 814
HapII	CCGG	2 cut(s)	121, 764
HgaI	GACGC	1 cut(s)	293
HhaI	GCGC	2 cut(s)	69, 589
Hin1I	GRCGYC	1 cut(s)	587
Hin1II	CATG	3 cut(s)	159, 313, 368
Hin6I	GCGC	2 cut(s)	67, 587
HinP1I	GCGC	2 cut(s)	67, 587
HinfI	GANTC	1 cut(s)	571
HpaII	CCGG	2 cut(s)	121, 764
HphI	GGTGA	4 cut(s)	514, 524, 781, 875
Hpy166II	GTNNAC	2 cut(s)	118, 625
Hpy188I	TCNGA	2 cut(s)	31, 220
Hpy188III	TCNNGA	6 cut(s)	134, 184, 310, 434, 575, 726
Hpy8I	GTNNAC	2 cut(s)	118, 625
HpyAV	CCTTC	6 cut(s)	370, 404, 709, 825, 853, 854
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	2 cut(s)	175, 882
HpyCH4V	TGCA	3 cut(s)	427, 468, 701
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpyF3I	CTNAG	6 cut(s)	219, 233, 288, 315, 615, 724
HpySE526I	ACGT	2 cut(s)	175, 882
Hsp92I	GRCGYC	1 cut(s)	587
Hsp92II	CATG	3 cut(s)	159, 313, 368
HspAI	GCGC	2 cut(s)	67, 587
KasI	GGCGCC	1 cut(s)	586
Kzo9I	GATC	6 cut(s)	22, 130, 190, 402, 457, 838
LmnI	GCTCC	1 cut(s)	93
Lsp1109I	GCAGC	2 cut(s)	480, 514
MaeI	CTAG	2 cut(s)	92, 804
MaeII	ACGT	2 cut(s)	175, 882
MaeIII	GTNAC	4 cut(s)	176, 661, 689, 863
MalI	GATC	6 cut(s)	24, 132, 192, 404, 459, 840
MboI	GATC	6 cut(s)	22, 130, 190, 402, 457, 838
MboII	GAAGA	6 cut(s)	32, 364, 397, 517, 614, 617
MfeI	CAATTG	1 cut(s)	463
MflI	RGATCY	3 cut(s)	402, 457, 838
MhlI	GDGCHC	1 cut(s)	90
MlsI	TGGCCA	1 cut(s)	498
MluCI	AATT	5 cut(s)	51, 304, 334, 463, 578
MluNI	TGGCCA	1 cut(s)	498
Mly113I	GGCGCC	1 cut(s)	587
MlyI	GAGTC	1 cut(s)	565
MmeI	TCCRAC	1 cut(s)	9
Mox20I	TGGCCA	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	498
MseI	TTAA	2 cut(s)	108, 886
MslI	CAYNNNNRTG	3 cut(s)	149, 363, 617
Msp20I	TGGCCA	1 cut(s)	498
MspI	CCGG	2 cut(s)	121, 764
MspR9I	CCNGG	4 cut(s)	122, 500, 740, 764
MunI	CAATTG	1 cut(s)	463
MvaI	CCWGG	2 cut(s)	500, 740
MwoI	GCNNNNNNNGC	1 cut(s)	298
NarI	GGCGCC	1 cut(s)	587
NciI	CCSGG	2 cut(s)	122, 764
NdeII	GATC	6 cut(s)	22, 130, 190, 402, 457, 838
NlaIII	CATG	3 cut(s)	159, 313, 368
NlaIV	GGNNCC	3 cut(s)	161, 588, 840
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	2 cut(s)	689, 863
NspI	RCATGY	1 cut(s)	368
PagI	TCATGA	1 cut(s)	309
PceI	AGGCCT	3 cut(s)	380, 743, 814
PkrI	GCNGC	2 cut(s)	470, 529
PleI	GAGTC	1 cut(s)	565
PluTI	GGCGCC	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	565
Ppu21I	YACGTR	1 cut(s)	176
Psp124BI	GAGCTC	1 cut(s)	90
Psp6I	CCWGG	2 cut(s)	498, 738
PspEI	GGTNACC	1 cut(s)	661
PspFI	CCCAGC	1 cut(s)	798
PspGI	CCWGG	2 cut(s)	498, 738
PspN4I	GGNNCC	3 cut(s)	161, 588, 840
PsuI	RGATCY	3 cut(s)	402, 457, 838
RsaI	GTAC	5 cut(s)	80, 119, 269, 325, 347
RsaNI	GTAC	5 cut(s)	79, 118, 268, 324, 346
RseI	CAYNNNNRTG	3 cut(s)	149, 363, 617
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	108, 886
SatI	GCNGC	2 cut(s)	469, 528
Sau3AI	GATC	6 cut(s)	22, 130, 190, 402, 457, 838
SchI	GAGTC	1 cut(s)	565
ScrFI	CCNGG	4 cut(s)	122, 500, 740, 764
SduI	GDGCHC	1 cut(s)	90
SfcI	CTRYAG	2 cut(s)	531, 679
SfoI	GGCGCC	1 cut(s)	588
SmiMI	CAYNNNNRTG	3 cut(s)	149, 363, 617
SmlI	CTYRAG	2 cut(s)	653, 833
SmoI	CTYRAG	2 cut(s)	653, 833
SnaBI	TACGTA	1 cut(s)	176
Sse9I	AATT	5 cut(s)	51, 304, 334, 463, 578
SseBI	AGGCCT	3 cut(s)	380, 743, 814
SsiI	CCGC	3 cut(s)	99, 280, 819
SspDI	GGCGCC	1 cut(s)	586
SspMI	CTAG	2 cut(s)	92, 804
SstI	GAGCTC	1 cut(s)	90
StuI	AGGCCT	3 cut(s)	380, 743, 814
StyD4I	CCNGG	4 cut(s)	120, 498, 738, 762
StyI	CCWWGG	2 cut(s)	91, 666
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	2 cut(s)	178, 885
TaqI	TCGA	3 cut(s)	48, 129, 371
TasI	AATT	5 cut(s)	51, 304, 334, 463, 578
TatI	WGTACW	3 cut(s)	267, 323, 345
Tru1I	TTAA	2 cut(s)	108, 886
Tru9I	TTAA	2 cut(s)	108, 886
TscAI	CASTG	1 cut(s)	619
TseFI	GTSAC	2 cut(s)	689, 863
TseI	GCWGC	2 cut(s)	468, 527
Tsp45I	GTSAC	2 cut(s)	689, 863
TspDTI	ATGAA	7 cut(s)	34, 260, 298, 389, 440, 615, 867
TspRI	CASTG	1 cut(s)	619
XapI	RAATTY	2 cut(s)	334, 578
XceI	RCATGY	1 cut(s)	368
XcmI	CCANNNNNNNNNTGG	1 cut(s)	506
XmaJI	CCTAGG	1 cut(s)	91
XspI	CTAG	2 cut(s)	92, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.