Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001260

Physical Location & Seq

Genomic Coordinates Reverse (-)

3387408 .. 3388822

Gene Structure 1415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g04580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCCAGTTGAGAGTTCGAATGCATCTGATCGAGATGCTGAACCATTTGTGGAGGTTGATCCAACTGGACGGTATGGGCGGTATGCTGACCTCCTTGGTCATGGTGCTGTGAAAAATGTTTATAGGGCGATCGATCAGGAGGAAGGTACAGAGGTGGCCTGGAATCAGGTCCGGTTGTACAATTACAGTGATGACCCAACACTCATAAATCGGCTTTACTCTGAGGTTATGCTGTTGAGGCAATTGAAGAACAAGTATATCATTGTTTGTCACAGCGTTTGGAAGGACGAGGCGCATAGCACTTTGAATTTTATCACTGAGGTGTGCAATTCTGGAAACCTGAGGGAGTACAGGGAGAAGCATCGCCGTGTGTCGCTTAAGGCTCTGAAGAAGTGGTCGAGACAGGTGCTTGAGGGATTGGAATACCTCCATACGCACGAGCCGTGCATCATTCACAGAGATCTCAATTGCAGCAACATCTTCATCAACGGGAATACTGGCCAGGTGAAAATTGGTGATCTGGGGTTTGCAGCAATAGTGGGAAAGAACCATTTAGCACATTCGATTATAGGTACACCCGAGTATATGGCGCCCGAGCTGTACGACGAGGATTACACAGAAATGGTGGATATATACTCGTTCGGGATGTGCTTGCTGGAGATGGTGACAATGGAGATACCATACAGTGAGTGTGACTCTGTTGCCAAGATATACAGGAAGGTGACAATGGGTGTCAAGCCTTTAGCCTTGAACAAGGTGACTGATCCGGAGGTGAAGGCGTTCATTGAGAAAGCCATAGGCCAGCCGAGGGCAAGACCTACAGCCTCTGATCTTCTCAAGGATCCCTTCTTGTCTGATGTCAGTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

290

Amino Acids

32.88

Weight (kDa)

5.64

Isoelectric Point (pI)

30.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55560
fragaria_vesca	FvH4_3g22150 FvH4_6g41240
malus_domestica	MD03G1189000.v1.1 MD09G1121400.v1.1 MD11G1205200.v1.1 MD17G1112400.v1.1
prunus_persica	Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.4G232100_v2.0.a1 Prupe.4G232100_v2.0.a1
pyrus_communis	pycom03g14190 pycom03g14210 pycom09g04580 pycom11g17800 pycom17g10410
rosa_chinensis	RchiOBHm_Chr2g0156791 RchiOBHm_Chr5g0038001 RchiOBHm_Chr5g0038041 RchiOBHm_Chr5g0042541
rosa_laevigata	RLG00000020942 RLG00000034135
rosa_multiflora	Rmu_co8331393.1_g000001 Rmu_co8390513.1_g000001 Rmu_sc0002670.1_g000011 Rmu_sc0008149.1_g000008 Rmu_sc0008278.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038120 Rroxscaffold_1G00042890 Rroxscaffold_2G00092720
rosa_rugosa	Rorug02G0456200 Rorug05G0170100 Rorug05G0201300 Rorug05G0201400
rosa_samantha	Rh2AG521800 Rh2BG535200 Rh2CG506700 Rh2DG544200 Rh5BG261300 Rh5BG261600 Rh5BG291700 Rh5CG293600 Rh5CG323900 Rh5DG270500 Rh5DG270600 Rh5DG301500
rosa_wichuraiana	Rw2G043080 Rw5G023930 Rw5G024110 Rw5G024140 Rw5G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	589
AccIII	TCCGGA	1 cut(s)	766
AciI	CCGC	1 cut(s)	79
AclWI	GGATC	4 cut(s)	53, 758, 836, 849
AcoI	YGGCCR	1 cut(s)	499
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	407
AcyI	GRCGYC	1 cut(s)	590
AfaI	GTAC	5 cut(s)	148, 179, 350, 574, 602
AfiI	CCNNNNNNNGG	1 cut(s)	808
AflII	CTTAAG	1 cut(s)	377
AgsI	TTSAA	3 cut(s)	247, 307, 751
AjnI	CCWGG	2 cut(s)	158, 501
AleI	CACNNNNGTG	1 cut(s)	320
AluBI	AGCT	1 cut(s)	598
AluI	AGCT	1 cut(s)	598
Alw26I	GTCTC	1 cut(s)	394
AlwI	GGATC	4 cut(s)	53, 758, 836, 849
AlwNI	CAGNNNCTG	1 cut(s)	827
Ama87I	CYCGRG	2 cut(s)	578, 593
Aor13HI	TCCGGA	1 cut(s)	766
AoxI	GGCC	3 cut(s)	156, 499, 799
ApeKI	GCWGC	2 cut(s)	471, 530
ApoI	RAATTY	1 cut(s)	307
Asp700I	GAANNNNTTC	1 cut(s)	779
AspLEI	GCGC	2 cut(s)	295, 592
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	6 cut(s)	517, 527, 676, 733, 769, 784
AsuII	TTCGAA	1 cut(s)	17
AvaI	CYCGRG	2 cut(s)	578, 593
AvaII	GGWCC	1 cut(s)	169
AxyI	CCTNAGG	1 cut(s)	341
BaeI	ACNNNNGTAYC	2 cut(s)	138, 171
BalI	TGGCCA	1 cut(s)	501
BamHI	GGATCC	1 cut(s)	841
BanI	GGYRCC	1 cut(s)	589
BauI	CACGAG	1 cut(s)	437
BbvI	GCAGC	2 cut(s)	483, 542
BccI	CCATC	1 cut(s)	655
BceAI	ACGGC	2 cut(s)	351, 427
BcgI	CGANNNNNNTGC	2 cut(s)	388, 422
BciT130I	CCWGG	2 cut(s)	160, 503
BcoDI	GTCTC	1 cut(s)	394
BfmI	CTRYAG	1 cut(s)	819
BfoI	RGCGCY	1 cut(s)	593
BfrI	CTTAAG	1 cut(s)	377
BglII	AGATCT	1 cut(s)	460
BisI	GCNGC	2 cut(s)	472, 531
BlsI	GCNGC	2 cut(s)	473, 532
Bme1390I	CCNGG	2 cut(s)	160, 503
Bme18I	GGWCC	1 cut(s)	169
BmeT110I	CYCGRG	2 cut(s)	578, 593
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	2 cut(s)	591, 843
BmrFI	CCNGG	2 cut(s)	160, 503
BmsI	GCATC	4 cut(s)	25, 32, 370, 456
BplI	GAGNNNNNCTC	2 cut(s)	680, 712
BpmI	CTGGAG	1 cut(s)	677
Bpu14I	TTCGAA	1 cut(s)	17
BpuEI	CTTGAG	2 cut(s)	431, 821
Bsa29I	ATCGAT	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	590
BsaJI	CCNNGG	2 cut(s)	94, 806
BsaWI	WCCGGW	2 cut(s)	171, 766
Bsc4I	CCNNNNNNNGG	1 cut(s)	808
Bse1I	ACTGG	3 cut(s)	5, 70, 502
Bse21I	CCTNAGG	1 cut(s)	341
BseAI	TCCGGA	1 cut(s)	766
BseBI	CCWGG	2 cut(s)	160, 503
BseCI	ATCGAT	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	94, 806
BseGI	GGATG	1 cut(s)	651
BseLI	CCNNNNNNNGG	1 cut(s)	808
BseMII	CTCAG	3 cut(s)	213, 309, 332
BseNI	ACTGG	3 cut(s)	5, 70, 502
BseXI	GCAGC	2 cut(s)	483, 542
Bsh1285I	CGRYCG	1 cut(s)	132
BshFI	GGCC	3 cut(s)	158, 501, 801
BshNI	GGYRCC	1 cut(s)	589
BshVI	ATCGAT	1 cut(s)	132
BsiEI	CGRYCG	1 cut(s)	132
BsiHKCI	CYCGRG	2 cut(s)	578, 593
BsiSI	CCGG	2 cut(s)	172, 767
BslI	CCNNNNNNNGG	1 cut(s)	808
BsmAI	GTCTC	1 cut(s)	394
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	3 cut(s)	158, 501, 801
BsoBI	CYCGRG	2 cut(s)	578, 593
Bsp119I	TTCGAA	1 cut(s)	17
Bsp13I	TCCGGA	1 cut(s)	766
Bsp1407I	TGTACA	1 cut(s)	177
Bsp143I	GATC	9 cut(s)	28, 58, 129, 133, 460, 517, 763, 829, 841
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	3 cut(s)	158, 501, 801
BspCNI	CTCAG	3 cut(s)	214, 310, 333
BspDI	ATCGAT	1 cut(s)	132
BspEI	TCCGGA	1 cut(s)	766
BspLI	GGNNCC	2 cut(s)	591, 843
BspPI	GGATC	4 cut(s)	53, 758, 836, 849
BspT104I	TTCGAA	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	589
BspTI	CTTAAG	1 cut(s)	377
BsrGI	TGTACA	1 cut(s)	177
BsrI	ACTGG	3 cut(s)	5, 70, 502
BssECI	CCNNGG	2 cut(s)	94, 806
BssMI	GATC	9 cut(s)	28, 58, 129, 133, 460, 517, 763, 829, 841
BssNI	GRCGYC	1 cut(s)	590
BssSI	CACGAG	1 cut(s)	437
BssT1I	CCWWGG	1 cut(s)	94
Bst2BI	CACGAG	1 cut(s)	437
Bst2UI	CCWGG	2 cut(s)	160, 503
Bst4CI	ACNGT	3 cut(s)	72, 188, 686
BstACI	GRCGYC	1 cut(s)	590
BstAFI	CTTAAG	1 cut(s)	377
BstAUI	TGTACA	1 cut(s)	177
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	653, 803
BstDEI	CTNAG	3 cut(s)	222, 318, 341
BstF5I	GGATG	1 cut(s)	651
BstH2I	RGCGCY	1 cut(s)	593
BstHHI	GCGC	2 cut(s)	295, 592
BstKTI	GATC	9 cut(s)	31, 61, 132, 136, 463, 520, 766, 832, 844
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	9 cut(s)	28, 58, 129, 133, 460, 517, 763, 829, 841
BstMCI	CGRYCG	1 cut(s)	132
BstMWI	GCNNNNNNNGC	1 cut(s)	238
BstNI	CCWGG	2 cut(s)	160, 503
BstSCI	CCNGG	2 cut(s)	158, 501
BstSFI	CTRYAG	1 cut(s)	819
BstV1I	GCAGC	2 cut(s)	483, 542
BstX2I	RGATCY	2 cut(s)	460, 841
BstYI	RGATCY	2 cut(s)	460, 841
Bsu15I	ATCGAT	1 cut(s)	132
Bsu36I	CCTNAGG	1 cut(s)	341
BsuRI	GGCC	3 cut(s)	158, 501, 801
BsuTUI	ATCGAT	1 cut(s)	132
BtgZI	GCGATG	1 cut(s)	347
BtsCI	GGATG	1 cut(s)	651
BtsIMutI	CAGTG	3 cut(s)	193, 315, 691
Cac8I	GCNNGC	2 cut(s)	653, 803
CaiI	CAGNNNCTG	1 cut(s)	827
CfoI	GCGC	2 cut(s)	295, 592
Cfr13I	GGNCC	1 cut(s)	169
ClaI	ATCGAT	1 cut(s)	132
Csp6I	GTAC	5 cut(s)	147, 178, 349, 573, 601
CviAII	CATG	1 cut(s)	101
CviQI	GTAC	5 cut(s)	147, 178, 349, 573, 601
DdeI	CTNAG	3 cut(s)	222, 318, 341
DinI	GGCGCC	1 cut(s)	591
DpnI	GATC	9 cut(s)	30, 60, 131, 135, 462, 519, 765, 831, 843
DpnII	GATC	9 cut(s)	28, 58, 129, 133, 460, 517, 763, 829, 841
EaeI	YGGCCR	1 cut(s)	499
Eco130I	CCWWGG	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	407
Eco81I	CCTNAGG	1 cut(s)	341
Eco88I	CYCGRG	2 cut(s)	578, 593
EcoRII	CCWGG	2 cut(s)	158, 501
EcoT14I	CCWWGG	1 cut(s)	94
EcoT22I	ATGCAT	1 cut(s)	25
EgeI	GGCGCC	1 cut(s)	591
EheI	GGCGCC	1 cut(s)	591
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	1 cut(s)	104
FalI	AAGNNNNNCTT	2 cut(s)	830, 862
FatI	CATG	1 cut(s)	100
Fnu4HI	GCNGC	2 cut(s)	472, 531
FokI	GGATG	1 cut(s)	658
Fsp4HI	GCNGC	2 cut(s)	472, 531
GlaI	GCGC	2 cut(s)	294, 591
GluI	GCNGC	2 cut(s)	472, 531
GsuI	CTGGAG	1 cut(s)	677
HaeII	RGCGCY	1 cut(s)	593
HaeIII	GGCC	3 cut(s)	158, 501, 801
HapII	CCGG	2 cut(s)	172, 767
HhaI	GCGC	2 cut(s)	295, 592
Hin1I	GRCGYC	1 cut(s)	590
Hin1II	CATG	1 cut(s)	104
Hin6I	GCGC	2 cut(s)	293, 590
HinP1I	GCGC	2 cut(s)	293, 590
HinfI	GANTC	2 cut(s)	163, 695
HpaII	CCGG	2 cut(s)	172, 767
HphI	GGTGA	6 cut(s)	517, 527, 676, 733, 769, 784
Hpy166II	GTNNAC	1 cut(s)	575
Hpy188I	TCNGA	5 cut(s)	28, 223, 387, 829, 856
Hpy188III	TCNNGA	6 cut(s)	32, 137, 333, 399, 643, 767
Hpy8I	GTNNAC	1 cut(s)	575
Hpy99I	CGWCG	1 cut(s)	608
HpyAV	CCTTC	5 cut(s)	137, 277, 712, 769, 856
HpyCH4III	ACNGT	3 cut(s)	72, 188, 686
HpyCH4V	TGCA	5 cut(s)	23, 327, 447, 471, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	238
HpyF3I	CTNAG	3 cut(s)	222, 318, 341
Hsp92I	GRCGYC	1 cut(s)	590
Hsp92II	CATG	1 cut(s)	104
HspAI	GCGC	2 cut(s)	293, 590
KasI	GGCGCC	1 cut(s)	589
Kpn2I	TCCGGA	1 cut(s)	766
Kzo9I	GATC	9 cut(s)	28, 58, 129, 133, 460, 517, 763, 829, 841
Lsp1109I	GCAGC	2 cut(s)	483, 542
LweI	GCATC	4 cut(s)	25, 32, 370, 456
MaeIII	GTNAC	5 cut(s)	269, 664, 692, 721, 757
MalI	GATC	9 cut(s)	30, 60, 131, 135, 462, 519, 765, 831, 843
MboI	GATC	9 cut(s)	28, 58, 129, 133, 460, 517, 763, 829, 841
MboII	GAAGA	4 cut(s)	259, 400, 472, 824
MfeI	CAATTG	2 cut(s)	242, 466
MflI	RGATCY	2 cut(s)	460, 841
MlsI	TGGCCA	1 cut(s)	501
MluCI	AATT	6 cut(s)	181, 242, 307, 328, 466, 510
MluNI	TGGCCA	1 cut(s)	501
Mly113I	GGCGCC	1 cut(s)	590
MlyI	GAGTC	1 cut(s)	689
MmeI	TCCRAC	1 cut(s)	86
Mox20I	TGGCCA	1 cut(s)	501
Mph1103I	ATGCAT	1 cut(s)	25
MroI	TCCGGA	1 cut(s)	766
MroXI	GAANNNNTTC	1 cut(s)	779
MscI	TGGCCA	1 cut(s)	501
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	3 cut(s)	320, 366, 620
Msp20I	TGGCCA	1 cut(s)	501
MspCI	CTTAAG	1 cut(s)	377
MspI	CCGG	2 cut(s)	172, 767
MspR9I	CCNGG	2 cut(s)	160, 503
MunI	CAATTG	2 cut(s)	242, 466
Mva1269I	GAATGC	1 cut(s)	25
MvaI	CCWGG	2 cut(s)	160, 503
MwoI	GCNNNNNNNGC	1 cut(s)	238
NarI	GGCGCC	1 cut(s)	590
NdeII	GATC	9 cut(s)	28, 58, 129, 133, 460, 517, 763, 829, 841
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	2 cut(s)	591, 843
NmeAIII	GCCGAG	1 cut(s)	831
NmuCI	GTSAC	5 cut(s)	269, 664, 692, 721, 757
NsiI	ATGCAT	1 cut(s)	25
NspV	TTCGAA	1 cut(s)	17
OliI	CACNNNNGTG	1 cut(s)	320
PcsI	WCGNNNNNNNCGW	1 cut(s)	440
PctI	GAATGC	1 cut(s)	25
PdmI	GAANNNNTTC	1 cut(s)	779
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	473, 532
Ple19I	CGATCG	1 cut(s)	132
PleI	GAGTC	1 cut(s)	689
PluTI	GGCGCC	1 cut(s)	593
PpsI	GAGTC	1 cut(s)	689
Psp6I	CCWGG	2 cut(s)	158, 501
PspGI	CCWGG	2 cut(s)	158, 501
PspN4I	GGNNCC	2 cut(s)	591, 843
PspPI	GGNCC	1 cut(s)	169
PstNI	CAGNNNCTG	1 cut(s)	827
PsuI	RGATCY	2 cut(s)	460, 841
PvuI	CGATCG	1 cut(s)	132
RsaI	GTAC	5 cut(s)	148, 179, 350, 574, 602
RsaNI	GTAC	5 cut(s)	147, 178, 349, 573, 601
RseI	CAYNNNNRTG	3 cut(s)	320, 366, 620
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	2 cut(s)	472, 531
Sau3AI	GATC	9 cut(s)	28, 58, 129, 133, 460, 517, 763, 829, 841
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	689
ScrFI	CCNGG	2 cut(s)	160, 503
SfaNI	GCATC	4 cut(s)	25, 32, 370, 456
SfcI	CTRYAG	1 cut(s)	819
SfoI	GGCGCC	1 cut(s)	591
SfuI	TTCGAA	1 cut(s)	17
SinI	GGWCC	1 cut(s)	169
SmiMI	CAYNNNNRTG	3 cut(s)	320, 366, 620
SmlI	CTYRAG	3 cut(s)	377, 410, 836
SmoI	CTYRAG	3 cut(s)	377, 410, 836
Sse9I	AATT	6 cut(s)	181, 242, 307, 328, 466, 510
SsiI	CCGC	1 cut(s)	79
SspDI	GGCGCC	1 cut(s)	589
StyD4I	CCNGG	2 cut(s)	158, 501
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	3 cut(s)	72, 188, 686
TaqI	TCGA	5 cut(s)	17, 31, 132, 398, 563
TasI	AATT	6 cut(s)	181, 242, 307, 328, 466, 510
TatI	WGTACW	2 cut(s)	177, 348
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	3 cut(s)	193, 322, 691
TseFI	GTSAC	5 cut(s)	269, 664, 692, 721, 757
TseI	GCWGC	2 cut(s)	471, 530
Tsp45I	GTSAC	5 cut(s)	269, 664, 692, 721, 757
TspDTI	ATGAA	2 cut(s)	472, 772
TspRI	CASTG	3 cut(s)	193, 322, 691
Vha464I	CTTAAG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	169
XapI	RAATTY	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	509
XmnI	GAANNNNTTC	1 cut(s)	779
Zsp2I	ATGCAT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.