Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001260

Physical Location & Seq

Genomic Coordinates Forward (+)

61181124 .. 61181994

Gene Structure 871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00042890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGTAGTCAAGGATCCTAATACTTTTGATCCAGATTCCGAACCATTTGTGGAGGTTGATCCTACCGGGCGTTTTGGAAGGTATGATGTTCTCCTTGGTAAGGGTGCTGTGAAGAAAGTGTATAGGGCATTTGATCAGCAACAAGGTAACGAGGTGGCGTGGAATAAGGTGTGGTTAAAGAAATTGATCAACAATCCAGTGCTATCGAATCATCTGGACGCAGAGATTAAGCTATTGAGAGAGTTGGAGAACAAGTATATCATTGAATGTTACAGTGTTTGGAAGGATGTCAAGCGTAATGCTTTGAATTTCGTTACTGAGGTGTGCAATTCTGGGAACCTGAGGGATTATAGGAAGAAGCATCACCATGTGAATACTAAGGCTTTGAAGAAGTGGTCAAAGCAGGTGCTTGAGGGATTGGAGTACCTCCATACACATAAGCCATGCATCATTCACAGAGATCTCAATTGCAGTAACATCTTCGTCAATGGGAATAATGGCCAGCAACAGTGGGTGGGAGCCACAAAGCTCACAGTTATAGGGACACCTGAGTTTATGGCACCTGAACTATACGAGGAGGATTACAATGAGATGGCGGACATATATTCGTTTGGGATGTGCTTGCTGGAGATGGCAACAAGGGAGATACCATACAGTGAATGTGAAACTGTTGTCAAGATTTACAGGAAGGTCTCAACTGCTATAAGGCCTGAATCCTTGTCCAAGGTGACCGATCCAGAGGTGAAGGCATTTATTGAGAAATCCCTAGGTCAGCCGAGGGCAAGACCTTCAGCCTCTGAGCTACTCAGAGACCCCTTCTTTTCTCAAGTCATTGCCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

280

Amino Acids

32.24

Weight (kDa)

7.05

Isoelectric Point (pI)

34.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	31 - 274	3.7e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	31 - 270	2.3e-25	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55560
fragaria_vesca	FvH4_3g22150 FvH4_6g41240
malus_domestica	MD03G1189000.v1.1 MD09G1121400.v1.1 MD11G1205200.v1.1 MD17G1112400.v1.1
prunus_persica	Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.4G232100_v2.0.a1 Prupe.4G232100_v2.0.a1
pyrus_communis	pycom03g14190 pycom03g14210 pycom09g04580 pycom11g17800 pycom17g10410
rosa_chinensis	RchiOBHm_Chr2g0156791 RchiOBHm_Chr5g0038001 RchiOBHm_Chr5g0038041 RchiOBHm_Chr5g0042541
rosa_laevigata	RLG00000020942 RLG00000034135
rosa_multiflora	Rmu_co8331393.1_g000001 Rmu_co8390513.1_g000001 Rmu_sc0002670.1_g000011 Rmu_sc0008149.1_g000008 Rmu_sc0008278.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038120 Rroxscaffold_1G00042890 Rroxscaffold_2G00092720
rosa_rugosa	Rorug02G0456200 Rorug05G0170100 Rorug05G0201300 Rorug05G0201400
rosa_samantha	Rh2AG521800 Rh2BG535200 Rh2CG506700 Rh2DG544200 Rh5BG261300 Rh5BG261600 Rh5BG291700 Rh5CG293600 Rh5CG323900 Rh5DG270500 Rh5DG270600 Rh5DG301500
rosa_wichuraiana	Rw2G043080 Rw5G023930 Rw5G024110 Rw5G024140 Rw5G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	394
Acc36I	ACCTGC	1 cut(s)	394
AccB1I	GGYRCC	1 cut(s)	559
AciI	CCGC	1 cut(s)	596
AclWI	GGATC	5 cut(s)	8, 21, 23, 53, 728
AcoI	YGGCCR	1 cut(s)	499
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	774
AdeI	CACNNNGTG	1 cut(s)	370
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	3 cut(s)	266, 307, 388
AluBI	AGCT	3 cut(s)	232, 529, 802
AluI	AGCT	3 cut(s)	232, 529, 802
Alw26I	GTCTC	2 cut(s)	697, 804
AlwI	GGATC	5 cut(s)	8, 21, 23, 53, 728
AlwNI	CAGNNNCTG	1 cut(s)	797
AoxI	GGCC	2 cut(s)	499, 707
ApoI	RAATTY	1 cut(s)	307
AspA2I	CCTAGG	1 cut(s)	766
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	3 cut(s)	356, 739, 754
AvrII	CCTAGG	1 cut(s)	766
AxyI	CCTNAGG	1 cut(s)	341
BalI	TGGCCA	1 cut(s)	501
BamHI	GGATCC	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	559
BccI	CCATC	2 cut(s)	586, 625
BclI	TGATCA	2 cut(s)	133, 186
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	2 cut(s)	697, 804
BfaI	CTAG	1 cut(s)	767
BfuAI	ACCTGC	1 cut(s)	394
BglII	AGATCT	1 cut(s)	460
BlnI	CCTAGG	1 cut(s)	766
Bme1390I	CCNGG	1 cut(s)	67
BmiI	GGNNCC	4 cut(s)	15, 338, 520, 561
BmrFI	CCNGG	1 cut(s)	67
BmsI	GCATC	2 cut(s)	370, 456
BpmI	CTGGAG	1 cut(s)	647
BpuEI	CTTGAG	2 cut(s)	431, 810
BpuMI	CCSGG	1 cut(s)	67
BsaI	GGTCTC	2 cut(s)	697, 804
BsaJI	CCNNGG	4 cut(s)	94, 723, 766, 776
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	197
Bse21I	CCTNAGG	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	831
BseDI	CCNNGG	4 cut(s)	94, 723, 766, 776
BseGI	GGATG	2 cut(s)	292, 621
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMI	GCAATG	1 cut(s)	831
BseMII	CTCAG	5 cut(s)	309, 332, 540, 789, 820
BseNI	ACTGG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	590
BshFI	GGCC	2 cut(s)	501, 709
BshNI	GGYRCC	1 cut(s)	559
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	556
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	2 cut(s)	697, 804
BsmFI	GGGAC	1 cut(s)	556
BsnI	GGCC	2 cut(s)	501, 709
Bso31I	GGTCTC	2 cut(s)	697, 804
Bsp143I	GATC	7 cut(s)	13, 28, 58, 133, 186, 460, 733
BspACI	CCGC	1 cut(s)	596
BspANI	GGCC	2 cut(s)	501, 709
BspCNI	CTCAG	5 cut(s)	310, 333, 541, 790, 819
BspLI	GGNNCC	4 cut(s)	15, 338, 520, 561
BspMI	ACCTGC	1 cut(s)	394
BspPI	GGATC	5 cut(s)	8, 21, 23, 53, 728
BspT107I	GGYRCC	1 cut(s)	559
BspTNI	GGTCTC	2 cut(s)	697, 804
BsrDI	GCAATG	1 cut(s)	831
BsrI	ACTGG	1 cut(s)	197
BssECI	CCNNGG	4 cut(s)	94, 723, 766, 776
BssMI	GATC	7 cut(s)	13, 28, 58, 133, 186, 460, 733
BssT1I	CCWWGG	3 cut(s)	94, 723, 766
Bst4CI	ACNGT	5 cut(s)	275, 510, 535, 656, 670
BstC8I	GCNNGC	2 cut(s)	503, 623
BstDEI	CTNAG	6 cut(s)	318, 341, 378, 549, 798, 806
BstEII	GGTNACC	1 cut(s)	727
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstF5I	GGATG	2 cut(s)	292, 621
BstKTI	GATC	7 cut(s)	16, 31, 61, 136, 189, 463, 736
BstMAI	GTCTC	2 cut(s)	697, 804
BstMBI	GATC	7 cut(s)	13, 28, 58, 133, 186, 460, 733
BstPI	GGTNACC	1 cut(s)	727
BstSCI	CCNGG	1 cut(s)	65
BstX2I	RGATCY	2 cut(s)	13, 460
BstYI	RGATCY	2 cut(s)	13, 460
Bsu36I	CCTNAGG	1 cut(s)	341
BsuRI	GGCC	2 cut(s)	501, 709
BtsCI	GGATG	2 cut(s)	292, 621
BtsIMutI	CAGTG	4 cut(s)	204, 280, 515, 661
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	2 cut(s)	503, 623
CaiI	CAGNNNCTG	1 cut(s)	797
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	2 cut(s)	368, 444
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	6 cut(s)	318, 341, 378, 549, 798, 806
DpnI	GATC	7 cut(s)	15, 30, 60, 135, 188, 462, 735
DpnII	GATC	7 cut(s)	13, 28, 58, 133, 186, 460, 733
DraIII	CACNNNGTG	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	499
EciI	GGCGGA	1 cut(s)	611
Eco130I	CCWWGG	3 cut(s)	94, 723, 766
Eco147I	AGGCCT	1 cut(s)	709
Eco31I	GGTCTC	2 cut(s)	697, 804
Eco57I	CTGAAG	1 cut(s)	774
Eco81I	CCTNAGG	1 cut(s)	341
Eco91I	GGTNACC	1 cut(s)	727
EcoNI	CCTNNNNNAGG	1 cut(s)	98
EcoO65I	GGTNACC	1 cut(s)	727
EcoT14I	CCWWGG	3 cut(s)	94, 723, 766
EcoT22I	ATGCAT	1 cut(s)	449
ErhI	CCWWGG	3 cut(s)	94, 723, 766
FaeI	CATG	2 cut(s)	371, 447
FaqI	GGGAC	1 cut(s)	556
FatI	CATG	2 cut(s)	367, 443
FbaI	TGATCA	2 cut(s)	133, 186
FokI	GGATG	2 cut(s)	299, 628
FspBI	CTAG	1 cut(s)	767
GsuI	CTGGAG	1 cut(s)	647
HaeIII	GGCC	2 cut(s)	501, 709
HapII	CCGG	1 cut(s)	66
HgaI	GACGC	1 cut(s)	227
Hin1II	CATG	2 cut(s)	371, 447
HinfI	GANTC	3 cut(s)	35, 208, 713
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	3 cut(s)	356, 739, 754
Hpy188I	TCNGA	3 cut(s)	40, 799, 809
Hpy188III	TCNNGA	4 cut(s)	32, 215, 676, 737
HpyAV	CCTTC	6 cut(s)	72, 277, 682, 739, 798, 826
HpyCH4III	ACNGT	5 cut(s)	275, 510, 535, 656, 670
HpyCH4V	TGCA	3 cut(s)	327, 447, 471
HpyF3I	CTNAG	6 cut(s)	318, 341, 378, 549, 798, 806
Hsp92II	CATG	2 cut(s)	371, 447
Ksp22I	TGATCA	2 cut(s)	133, 186
Kzo9I	GATC	7 cut(s)	13, 28, 58, 133, 186, 460, 733
LmnI	GCTCC	1 cut(s)	518
LweI	GCATC	2 cut(s)	370, 456
MaeI	CTAG	1 cut(s)	767
MaeIII	GTNAC	5 cut(s)	146, 269, 313, 473, 727
MalI	GATC	7 cut(s)	15, 30, 60, 135, 188, 462, 735
MboI	GATC	7 cut(s)	13, 28, 58, 133, 186, 460, 733
MboII	GAAGA	4 cut(s)	124, 367, 400, 472
MfeI	CAATTG	1 cut(s)	466
MflI	RGATCY	2 cut(s)	13, 460
MlsI	TGGCCA	1 cut(s)	501
MluCI	AATT	4 cut(s)	182, 307, 328, 466
MluNI	TGGCCA	1 cut(s)	501
MmeI	TCCRAC	1 cut(s)	225
Mox20I	TGGCCA	1 cut(s)	501
Mph1103I	ATGCAT	1 cut(s)	449
MscI	TGGCCA	1 cut(s)	501
MseI	TTAA	2 cut(s)	176, 228
MslI	CAYNNNNRTG	1 cut(s)	366
Msp20I	TGGCCA	1 cut(s)	501
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	67
MunI	CAATTG	1 cut(s)	466
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	7 cut(s)	13, 28, 58, 133, 186, 460, 733
NlaIII	CATG	2 cut(s)	371, 447
NlaIV	GGNNCC	4 cut(s)	15, 338, 520, 561
NmeAIII	GCCGAG	1 cut(s)	801
NmuCI	GTSAC	1 cut(s)	727
NsiI	ATGCAT	1 cut(s)	449
PaqCI	CACCTGC	1 cut(s)	394
PceI	AGGCCT	1 cut(s)	709
PfeI	GAWTC	3 cut(s)	35, 208, 713
PspEI	GGTNACC	1 cut(s)	727
PspN4I	GGNNCC	4 cut(s)	15, 338, 520, 561
PstNI	CAGNNNCTG	1 cut(s)	797
PsuI	RGATCY	2 cut(s)	13, 460
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	366
SaqAI	TTAA	2 cut(s)	176, 228
Sau3AI	GATC	7 cut(s)	13, 28, 58, 133, 186, 460, 733
ScrFI	CCNGG	1 cut(s)	67
SfaNI	GCATC	2 cut(s)	370, 456
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	2 cut(s)	410, 825
SmoI	CTYRAG	2 cut(s)	410, 825
Sse9I	AATT	4 cut(s)	182, 307, 328, 466
SseBI	AGGCCT	1 cut(s)	709
SsiI	CCGC	1 cut(s)	596
SspMI	CTAG	1 cut(s)	767
StuI	AGGCCT	1 cut(s)	709
StyD4I	CCNGG	1 cut(s)	65
StyI	CCWWGG	3 cut(s)	94, 723, 766
TaaI	ACNGT	5 cut(s)	275, 510, 535, 656, 670
TaqI	TCGA	1 cut(s)	206
TaqII	GACCGA	1 cut(s)	746
TasI	AATT	4 cut(s)	182, 307, 328, 466
TfiI	GAWTC	3 cut(s)	35, 208, 713
Tru1I	TTAA	2 cut(s)	176, 228
Tru9I	TTAA	2 cut(s)	176, 228
TscAI	CASTG	4 cut(s)	204, 280, 515, 661
TseFI	GTSAC	1 cut(s)	727
Tsp45I	GTSAC	1 cut(s)	727
TspRI	CASTG	4 cut(s)	204, 280, 515, 661
XagI	CCTNNNNNAGG	1 cut(s)	98
XapI	RAATTY	1 cut(s)	307
XmaJI	CCTAGG	1 cut(s)	766
XspI	CTAG	1 cut(s)	767
Zsp2I	ATGCAT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.