Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008149.1

Orthogroup ID

OG0001260

Physical Location & Seq

Genomic Coordinates Reverse (-)

29484 .. 30981

Gene Structure 1498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008149.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atggcagtcaaggatcctaatacttttgatccagattccgaaccatttgtggaggttgatccaacgggacgttttggcaggtatgatgttctccttggtcagggtgctgtcaagaaggtctatagggcatttgatcagcagcaaggtaacgaggtggcatggaataaggtgcggttgaagaactttaccgacgatccaatgctgttgaatcacctttacgcggaggttaagctattgagagagttggagaacaagtatattatcgagtgttacagtgtgtggaaggatgttgagcggaatgctttgaattttgtgacggaggtgtgcaattctgggaacctgagggattataggaagaagcatcgccgtgtgaatatcaaggctttgaagaagtggtcaaagcaggtgcttgagggattgcagtacctccatacacatgagccatgcatcattcatagagatctcaattgcagcaacatctttgtcaatgggaataatggccaggtgaagatcggtgatctgggatttgcagcaatactggggaggagccacaaagcacatactgttctaggaactcctgagtttatggcacctgagctctacgaggaggattacaatgagatggtggacatatactcgtttgggatgtgcttgctggagatggtaacgagggagataccatacagtgaatgtgacactgttgtcaagatatacaggaaggtcacagctggtataaggcctgaatccctgtccaaggtgactgatccagaggtgaaggcatttattgagaaatccataggccagccgagggcaagaccttcagcctctgacctactcagagaccccttcttttctgacgtcattgctgaagagcctgatccaagctattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

296

Amino Acids

33.97

Weight (kDa)

5.88

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55560
fragaria_vesca	FvH4_3g22150 FvH4_6g41240
malus_domestica	MD03G1189000.v1.1 MD09G1121400.v1.1 MD11G1205200.v1.1 MD17G1112400.v1.1
prunus_persica	Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.4G232100_v2.0.a1 Prupe.4G232100_v2.0.a1
pyrus_communis	pycom03g14190 pycom03g14210 pycom09g04580 pycom11g17800 pycom17g10410
rosa_chinensis	RchiOBHm_Chr2g0156791 RchiOBHm_Chr5g0038001 RchiOBHm_Chr5g0038041 RchiOBHm_Chr5g0042541
rosa_laevigata	RLG00000020942 RLG00000034135
rosa_multiflora	Rmu_co8331393.1_g000001 Rmu_co8390513.1_g000001 Rmu_sc0002670.1_g000011 Rmu_sc0008149.1_g000008 Rmu_sc0008278.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038120 Rroxscaffold_1G00042890 Rroxscaffold_2G00092720
rosa_rugosa	Rorug02G0456200 Rorug05G0170100 Rorug05G0201300 Rorug05G0201400
rosa_samantha	Rh2AG521800 Rh2BG535200 Rh2CG506700 Rh2DG544200 Rh5BG261300 Rh5BG261600 Rh5BG291700 Rh5CG293600 Rh5CG323900 Rh5DG270500 Rh5DG270600 Rh5DG301500
rosa_wichuraiana	Rw2G043080 Rw5G023930 Rw5G024110 Rw5G024140 Rw5G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	394
AasI	GACNNNNNNGTC	1 cut(s)	701
AatII	GACGTC	1 cut(s)	861
Acc36I	ACCTGC	2 cut(s)	69, 394
AccB1I	GGYRCC	1 cut(s)	589
AccBSI	CCGCTC	1 cut(s)	295
AccII	CGCG	1 cut(s)	221
AciI	CCGC	3 cut(s)	172, 221, 295
AclWI	GGATC	7 cut(s)	8, 21, 23, 53, 188, 758, 872
AcoI	YGGCCR	1 cut(s)	499
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	2 cut(s)	804, 888
AcyI	GRCGYC	1 cut(s)	858
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	4 cut(s)	100, 220, 754, 808
AgsI	TTSAA	4 cut(s)	178, 208, 307, 388
AjnI	CCWGG	1 cut(s)	501
AluBI	AGCT	4 cut(s)	232, 598, 728, 885
AluI	AGCT	4 cut(s)	232, 598, 728, 885
Alw21I	GWGCWC	1 cut(s)	600
Alw26I	GTCTC	1 cut(s)	834
AlwI	GGATC	7 cut(s)	8, 21, 23, 53, 188, 758, 872
AlwNI	CAGNNNCTG	1 cut(s)	827
AoxI	GGCC	3 cut(s)	499, 737, 799
ApeKI	GCWGC	3 cut(s)	139, 471, 530
ApoI	RAATTY	1 cut(s)	307
AsuHPI	GGTGA	5 cut(s)	203, 517, 527, 769, 784
AxyI	CCTNAGG	1 cut(s)	341
BalI	TGGCCA	1 cut(s)	501
BamHI	GGATCC	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	589
BanII	GRGCYC	1 cut(s)	600
Bbv12I	GWGCWC	1 cut(s)	600
BbvI	GCAGC	3 cut(s)	151, 483, 542
BccI	CCATC	2 cut(s)	616, 655
BceAI	ACGGC	1 cut(s)	351
BciT130I	CCWGG	1 cut(s)	503
BclI	TGATCA	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	834
BfaI	CTAG	1 cut(s)	569
BfmI	CTRYAG	1 cut(s)	121
BfuAI	ACCTGC	2 cut(s)	69, 394
BglII	AGATCT	1 cut(s)	460
BisI	GCNGC	3 cut(s)	140, 472, 531
BlsI	GCNGC	3 cut(s)	141, 473, 532
Bme1390I	CCNGG	1 cut(s)	503
BmiI	GGNNCC	4 cut(s)	15, 338, 548, 591
BmrFI	CCNGG	1 cut(s)	503
BmrI	ACTGGG	1 cut(s)	548
BmsI	GCATC	2 cut(s)	370, 456
BmuI	ACTGGG	1 cut(s)	548
BpmI	CTGGAG	1 cut(s)	677
Bpu10I	CCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	431
BsaHI	GRCGYC	1 cut(s)	858
BsaI	GGTCTC	1 cut(s)	834
BsaJI	CCNNGG	3 cut(s)	94, 753, 806
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	4 cut(s)	100, 220, 754, 808
Bse1I	ACTGG	1 cut(s)	543
Bse21I	CCTNAGG	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	861
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	3 cut(s)	94, 753, 806
BseGI	GGATG	2 cut(s)	292, 651
BseLI	CCNNNNNNNGG	4 cut(s)	100, 220, 754, 808
BseMI	GCAATG	1 cut(s)	861
BseMII	CTCAG	4 cut(s)	332, 570, 585, 850
BseNI	ACTGG	1 cut(s)	543
BseRI	GAGGAG	2 cut(s)	559, 620
BseXI	GCAGC	3 cut(s)	151, 483, 542
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	3 cut(s)	501, 739, 801
BshNI	GGYRCC	1 cut(s)	589
BsiHKAI	GWGCWC	1 cut(s)	600
BslFI	GGGAC	1 cut(s)	81
BslI	CCNNNNNNNGG	4 cut(s)	100, 220, 754, 808
BsmAI	GTCTC	1 cut(s)	834
BsmFI	GGGAC	1 cut(s)	81
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	3 cut(s)	501, 739, 801
Bso31I	GGTCTC	1 cut(s)	834
Bsp1286I	GDGCHC	1 cut(s)	600
BspACI	CCGC	3 cut(s)	172, 221, 295
BspANI	GGCC	3 cut(s)	501, 739, 801
BspCNI	CTCAG	4 cut(s)	333, 571, 586, 849
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	4 cut(s)	15, 338, 548, 591
BspMI	ACCTGC	2 cut(s)	69, 394
BspPI	GGATC	7 cut(s)	8, 21, 23, 53, 188, 758, 872
BspQI	GCTCTTC	1 cut(s)	864
BspT107I	GGYRCC	1 cut(s)	589
BspTNI	GGTCTC	1 cut(s)	834
BsrBI	CCGCTC	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	861
BsrI	ACTGG	1 cut(s)	543
BssECI	CCNNGG	3 cut(s)	94, 753, 806
BssNI	GRCGYC	1 cut(s)	858
BssT1I	CCWWGG	2 cut(s)	94, 753
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	4 cut(s)	275, 565, 686, 700
Bst6I	CTCTTC	1 cut(s)	864
BstACI	GRCGYC	1 cut(s)	858
BstC8I	GCNNGC	2 cut(s)	653, 803
BstDEI	CTNAG	4 cut(s)	341, 579, 594, 836
BstENI	CCTNNNNNAGG	2 cut(s)	98, 752
BstF5I	GGATG	2 cut(s)	292, 651
BstFNI	CGCG	1 cut(s)	221
BstMAI	GTCTC	1 cut(s)	834
BstNI	CCWGG	1 cut(s)	503
BstSCI	CCNGG	1 cut(s)	501
BstSFI	CTRYAG	1 cut(s)	121
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	3 cut(s)	151, 483, 542
BstX2I	RGATCY	2 cut(s)	13, 460
BstYI	RGATCY	2 cut(s)	13, 460
Bsu36I	CCTNAGG	1 cut(s)	341
BsuRI	GGCC	3 cut(s)	501, 739, 801
BtgZI	GCGATG	1 cut(s)	347
BtsCI	GGATG	2 cut(s)	292, 651
BtsIMutI	CAGTG	3 cut(s)	280, 691, 696
BveI	ACCTGC	2 cut(s)	69, 394
Cac8I	GCNNGC	2 cut(s)	653, 803
CaiI	CAGNNNCTG	1 cut(s)	827
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	3 cut(s)	159, 437, 444
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	4 cut(s)	341, 579, 594, 836
DrdI	GACNNNNNNGTC	1 cut(s)	701
DseDI	GACNNNNNNGTC	1 cut(s)	701
EaeI	YGGCCR	1 cut(s)	499
Eam1104I	CTCTTC	1 cut(s)	864
EarI	CTCTTC	1 cut(s)	864
Ecl136II	GAGCTC	1 cut(s)	598
Eco130I	CCWWGG	2 cut(s)	94, 753
Eco147I	AGGCCT	1 cut(s)	739
Eco24I	GRGCYC	1 cut(s)	600
Eco31I	GGTCTC	1 cut(s)	834
Eco53kI	GAGCTC	1 cut(s)	598
Eco57I	CTGAAG	2 cut(s)	804, 888
Eco81I	CCTNAGG	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	598
EcoNI	CCTNNNNNAGG	2 cut(s)	98, 752
EcoRII	CCWGG	1 cut(s)	501
EcoT14I	CCWWGG	2 cut(s)	94, 753
EcoT22I	ATGCAT	1 cut(s)	449
EcoT38I	GRGCYC	1 cut(s)	600
ErhI	CCWWGG	2 cut(s)	94, 753
FaeI	CATG	3 cut(s)	162, 440, 447
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	3 cut(s)	158, 436, 443
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	3 cut(s)	140, 472, 531
FokI	GGATG	2 cut(s)	299, 658
FriOI	GRGCYC	1 cut(s)	600
Fsp4HI	GCNGC	3 cut(s)	140, 472, 531
FspBI	CTAG	1 cut(s)	569
GluI	GCNGC	3 cut(s)	140, 472, 531
GsuI	CTGGAG	1 cut(s)	677
HaeIII	GGCC	3 cut(s)	501, 739, 801
Hin1I	GRCGYC	1 cut(s)	858
Hin1II	CATG	3 cut(s)	162, 440, 447
HinfI	GANTC	3 cut(s)	35, 208, 743
HphI	GGTGA	5 cut(s)	203, 517, 527, 769, 784
Hpy166II	GTNNAC	1 cut(s)	628
Hpy188I	TCNGA	4 cut(s)	40, 829, 839, 856
Hpy188III	TCNNGA	5 cut(s)	32, 112, 578, 706, 767
Hpy8I	GTNNAC	1 cut(s)	628
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	6 cut(s)	109, 277, 712, 769, 828, 856
HpyCH4III	ACNGT	4 cut(s)	275, 565, 686, 700
HpyCH4IV	ACGT	2 cut(s)	70, 858
HpyCH4V	TGCA	5 cut(s)	327, 421, 447, 471, 530
HpyF3I	CTNAG	4 cut(s)	341, 579, 594, 836
HpySE526I	ACGT	2 cut(s)	70, 858
Hsp92I	GRCGYC	1 cut(s)	858
Hsp92II	CATG	3 cut(s)	162, 440, 447
Ksp22I	TGATCA	1 cut(s)	133
LguI	GCTCTTC	1 cut(s)	864
LmnI	GCTCC	1 cut(s)	546
Lsp1109I	GCAGC	3 cut(s)	151, 483, 542
LweI	GCATC	2 cut(s)	370, 456
MaeI	CTAG	1 cut(s)	569
MaeII	ACGT	2 cut(s)	70, 858
MaeIII	GTNAC	7 cut(s)	146, 269, 313, 664, 692, 721, 757
MbiI	CCGCTC	1 cut(s)	295
MboII	GAAGA	5 cut(s)	190, 367, 400, 520, 881
MfeI	CAATTG	1 cut(s)	466
MflI	RGATCY	2 cut(s)	13, 460
MhlI	GDGCHC	1 cut(s)	600
MlsI	TGGCCA	1 cut(s)	501
MluCI	AATT	3 cut(s)	307, 328, 466
MluNI	TGGCCA	1 cut(s)	501
MmeI	TCCRAC	2 cut(s)	86, 225
Mox20I	TGGCCA	1 cut(s)	501
Mph1103I	ATGCAT	1 cut(s)	449
MscI	TGGCCA	1 cut(s)	501
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	2 cut(s)	366, 435
Msp20I	TGGCCA	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	728
MspR9I	CCNGG	1 cut(s)	503
MunI	CAATTG	1 cut(s)	466
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	1 cut(s)	503
MvnI	CGCG	1 cut(s)	221
NlaIII	CATG	3 cut(s)	162, 440, 447
NlaIV	GGNNCC	4 cut(s)	15, 338, 548, 591
NmeAIII	GCCGAG	1 cut(s)	831
NmuCI	GTSAC	4 cut(s)	313, 692, 721, 757
NsiI	ATGCAT	1 cut(s)	449
PaqCI	CACCTGC	1 cut(s)	394
PceI	AGGCCT	1 cut(s)	739
PciSI	GCTCTTC	1 cut(s)	864
PctI	GAATGC	1 cut(s)	304
PfeI	GAWTC	3 cut(s)	35, 208, 743
PkrI	GCNGC	3 cut(s)	141, 473, 532
Psp124BI	GAGCTC	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	501
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	4 cut(s)	15, 338, 548, 591
PstNI	CAGNNNCTG	1 cut(s)	827
PsuI	RGATCY	2 cut(s)	13, 460
PvuII	CAGCTG	1 cut(s)	728
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	2 cut(s)	366, 435
SacI	GAGCTC	1 cut(s)	600
SapI	GCTCTTC	1 cut(s)	864
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	3 cut(s)	140, 472, 531
ScrFI	CCNGG	1 cut(s)	503
SduI	GDGCHC	1 cut(s)	600
SfaNI	GCATC	2 cut(s)	370, 456
SfcI	CTRYAG	1 cut(s)	121
SmiMI	CAYNNNNRTG	2 cut(s)	366, 435
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	3 cut(s)	307, 328, 466
SseBI	AGGCCT	1 cut(s)	739
SsiI	CCGC	3 cut(s)	172, 221, 295
SspMI	CTAG	1 cut(s)	569
SstI	GAGCTC	1 cut(s)	600
StuI	AGGCCT	1 cut(s)	739
StyD4I	CCNGG	1 cut(s)	501
StyI	CCWWGG	2 cut(s)	94, 753
TaaI	ACNGT	4 cut(s)	275, 565, 686, 700
TaiI	ACGT	2 cut(s)	73, 861
TaqI	TCGA	1 cut(s)	264
TasI	AATT	3 cut(s)	307, 328, 466
TfiI	GAWTC	3 cut(s)	35, 208, 743
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	3 cut(s)	280, 691, 703
TseFI	GTSAC	4 cut(s)	313, 692, 721, 757
TseI	GCWGC	3 cut(s)	139, 471, 530
Tsp45I	GTSAC	4 cut(s)	313, 692, 721, 757
TspDTI	ATGAA	1 cut(s)	443
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	3 cut(s)	280, 691, 703
XagI	CCTNNNNNAGG	2 cut(s)	98, 752
XapI	RAATTY	1 cut(s)	307
XspI	CTAG	1 cut(s)	569
ZraI	GACGTC	1 cut(s)	859
Zsp2I	ATGCAT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.