Rroxscaffold_1G00038120

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
55559427 .. 55562752
3326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00038120.1

Sequence Viewer

Length: 1059 bp
ATGGAGCCACCCAGTTCTGAAAGCAAAGAAGCATTGGAAGGATTCAAATGTGTGATGAAGGATGGTACTCAGGTGGTGACCGAGGTTGTATCGGATCACCACACAATCAACCGTTGCCTCCACCTCATAACCAGGAAAATTCGTGACAAGAAAGACATGCGTCGTCGGATGCCGAGTGAAGGTGCAGACCAGTCGGAGGGAGACAGCGAACCCTTCGTCGAAATAGACCCAACCCAGCGGTACGGCCGTTACGACGACCTACTGGGTTCCGGCGGTGTCAAAAAGGTGTACCGAGCTTTTGATCAAGAAGAGGGCATAGAGGTGGCATGGAACCAGGTCAAACTGAGTAACTTCATCAACGATTCCGCCATGACCGAAAGGCTTTACTCAGAGGTTCGGTTGCTGAAGTCCCTGCAGAACAAAAACATCATTGCTTTGCATAACGTGTGGAGAGACGAGGAGAAAAACATTCTGAATTTCATGACTGAGGTTTGTACCAGTGGGAATCTGAGGGAGTACAGGAAGAAGCACAAGAACGTTTCGATGAAGGCCTTGAAGAAGTGGTCGTTTCAGATCTTGAAAGGGTTGGAGTATTTGCATACGCATGAGCCCTGTGTGATTCATAGAGATCTCAATTGCAGCAATGTGTTTGTCAACGGGAATCTTGGCAAGGTGAAGATTGGTGACTTGGGACTGGCTGCTATAGTAGGGAAGACTCACTCAGCTCATTCAGTGCTAGGCACACCAGAATTTATGGCACCGGAGCTTTATGAAGAGCATTACACTGAAATGGTGGACATATACTCATTTGGAATGTGTGTACTAGAGATGGTGACCTTGGAAATGCCCTACGGCGAATGCGACAATATTGCCAAAATATACAAGAAAGTAACCTCCGGGGTCAGACCTCAGACCTTGAACAAGATCAAGGACCCGGAGGTGAGGGCATTTGTCGAGAGGTGCCTTGCACAACCTAGGGCGAGACCTTCTGCAACCGAACTCCTCAAGGACCCGTTCTTTGATGAGGTTGATGACGACGACGATGACGAAAATAATTAA

Protein Analysis

352

Amino Acids

40.28

Weight (kDa)

5.65

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 86 - 340 6.1e-51 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 86 - 336 3e-37 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 757, 960
AciI CCGC 3 cut(s) 238, 273, 366
AclI AACGTT 1 cut(s) 537
AclWI GGATC 1 cut(s) 102
AcoI YGGCCR 1 cut(s) 244
AcsI RAATTY 3 cut(s) 138, 475, 749
AcuI CTGAAG 1 cut(s) 425
AfaI GTAC 6 cut(s) 67, 242, 290, 496, 518, 822
AfiI CCNNNNNNNGG 2 cut(s) 179, 196
AflIII ACRYGT 1 cut(s) 444
AgsI TTSAA 4 cut(s) 46, 556, 580, 919
AjnI CCWGG 2 cut(s) 131, 333
AluBI AGCT 3 cut(s) 296, 725, 766
AluI AGCT 3 cut(s) 296, 725, 766
Alw26I GTCTC 3 cut(s) 195, 447, 976
AlwI GGATC 1 cut(s) 102
AoxI GGCC 2 cut(s) 244, 549
ApeKI GCWGC 2 cut(s) 639, 698
ApoI RAATTY 3 cut(s) 138, 475, 749
ArsI GACNNNNNNTTYG 4 cut(s) 201, 233, 1001, 1033
AspA2I CCTAGG 1 cut(s) 974
AspS9I GGNCC 2 cut(s) 931, 1009
AsuC2I CCSGG 2 cut(s) 898, 935
AsuHPI GGTGA 6 cut(s) 88, 89, 685, 695, 844, 952
AvaII GGWCC 2 cut(s) 931, 1009
AvrII CCTAGG 1 cut(s) 974
BaeI ACNNNNGTAYC 4 cut(s) 57, 90, 232, 265
BanI GGYRCC 2 cut(s) 757, 960
BanII GRGCYC 1 cut(s) 612
BbsI GAAGAC 1 cut(s) 719
BbvI GCAGC 2 cut(s) 651, 685
BccI CCATC 2 cut(s) 56, 823
BceAI ACGGC 3 cut(s) 231, 259, 868
BcgI CGANNNNNNTGC 4 cut(s) 174, 208, 851, 885
BciT130I CCWGG 2 cut(s) 133, 335
BclI TGATCA 1 cut(s) 301
BcnI CCSGG 2 cut(s) 898, 935
BcoDI GTCTC 3 cut(s) 195, 447, 976
BfaI CTAG 3 cut(s) 737, 824, 975
BfmI CTRYAG 2 cut(s) 413, 702
BglII AGATCT 2 cut(s) 573, 628
BisI GCNGC 2 cut(s) 640, 699
BlnI CCTAGG 1 cut(s) 974
BlsI GCNGC 2 cut(s) 641, 700
Bme1390I CCNGG 4 cut(s) 133, 335, 898, 935
Bme18I GGWCC 2 cut(s) 931, 1009
BmgT120I GGNCC 2 cut(s) 931, 1009
BmiI GGNNCC 7 cut(s) 6, 268, 332, 759, 933, 962, 1011
BmrFI CCNGG 4 cut(s) 133, 335, 898, 935
BmrI ACTGGG 2 cut(s) 6, 272
BmsI GCATC 1 cut(s) 159
BmuI ACTGGG 2 cut(s) 6, 272
BoxI GACNNNNGTC 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 719
BpuEI CTTGAG 1 cut(s) 989
BpuMI CCSGG 2 cut(s) 898, 935
BsaI GGTCTC 1 cut(s) 976
BsaJI CCNNGG 4 cut(s) 81, 837, 897, 974
BsaWI WCCGGW 1 cut(s) 760
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 196
Bse1I ACTGG 5 cut(s) 12, 190, 267, 498, 699
Bse3DI GCAATG 2 cut(s) 429, 649
BseBI CCWGG 2 cut(s) 133, 335
BseDI CCNNGG 4 cut(s) 81, 837, 897, 974
BseGI GGATG 2 cut(s) 67, 174
BseLI CCNNNNNNNGG 2 cut(s) 179, 196
BseMI GCAATG 2 cut(s) 429, 649
BseMII CTCAG 7 cut(s) 83, 335, 402, 477, 500, 735, 923
BseNI ACTGG 5 cut(s) 12, 190, 267, 498, 699
BseRI GAGGAG 2 cut(s) 473, 992
BseX3I CGGCCG 1 cut(s) 244
BseXI GCAGC 2 cut(s) 651, 685
BseYI CCCAGC 1 cut(s) 234
BsgI GTGCAG 1 cut(s) 204
Bsh1285I CGRYCG 1 cut(s) 247
BshFI GGCC 2 cut(s) 246, 551
BshNI GGYRCC 2 cut(s) 757, 960
BsiEI CGRYCG 1 cut(s) 247
BsiSI CCGG 4 cut(s) 270, 761, 897, 935
BslFI GGGAC 2 cut(s) 394, 705
BslI CCNNNNNNNGG 2 cut(s) 179, 196
BsmAI GTCTC 3 cut(s) 195, 447, 976
BsmBI CGTCTC 1 cut(s) 447
BsmFI GGGAC 2 cut(s) 394, 705
BsmI GAATGC 1 cut(s) 863
BsnI GGCC 2 cut(s) 246, 551
Bso31I GGTCTC 1 cut(s) 976
Bsp1286I GDGCHC 1 cut(s) 612
Bsp143I GATC 5 cut(s) 94, 301, 573, 628, 924
BspACI CCGC 3 cut(s) 238, 273, 366
BspANI GGCC 2 cut(s) 246, 551
BspCNI CTCAG 7 cut(s) 82, 336, 401, 478, 501, 734, 922
BspHI TCATGA 1 cut(s) 480
BspLI GGNNCC 7 cut(s) 6, 268, 332, 759, 933, 962, 1011
BspMAI CTGCAG 1 cut(s) 417
BspPI GGATC 1 cut(s) 102
BspQI GCTCTTC 1 cut(s) 768
BspT107I GGYRCC 2 cut(s) 757, 960
BspTNI GGTCTC 1 cut(s) 976
BsrDI GCAATG 2 cut(s) 429, 649
BsrI ACTGG 5 cut(s) 12, 190, 267, 498, 699
BssECI CCNNGG 4 cut(s) 81, 837, 897, 974
BssMI GATC 5 cut(s) 94, 301, 573, 628, 924
BssT1I CCWWGG 2 cut(s) 837, 974
Bst2UI CCWGG 2 cut(s) 133, 335
Bst4CI ACNGT 1 cut(s) 113
Bst6I CTCTTC 2 cut(s) 303, 768
BstDEI CTNAG 7 cut(s) 69, 344, 388, 486, 509, 721, 909
BstEII GGTNACC 2 cut(s) 76, 832
BstF5I GGATG 2 cut(s) 67, 174
BstKTI GATC 5 cut(s) 97, 304, 576, 631, 927
BstMAI GTCTC 3 cut(s) 195, 447, 976
BstMBI GATC 5 cut(s) 94, 301, 573, 628, 924
BstMCI CGRYCG 1 cut(s) 247
BstNI CCWGG 2 cut(s) 133, 335
BstNSI RCATGY 1 cut(s) 160
BstPAI GACNNNNGTC 1 cut(s) 159
BstPI GGTNACC 2 cut(s) 76, 832
BstSCI CCNGG 4 cut(s) 131, 333, 896, 933
BstSFI CTRYAG 2 cut(s) 413, 702
BstV1I GCAGC 2 cut(s) 651, 685
BstV2I GAAGAC 1 cut(s) 719
BstX2I RGATCY 2 cut(s) 573, 628
BstYI RGATCY 2 cut(s) 573, 628
BstZI CGGCCG 1 cut(s) 244
BsuRI GGCC 2 cut(s) 246, 551
BtsCI GGATG 2 cut(s) 67, 174
BtsIMutI CAGTG 3 cut(s) 505, 738, 783
CciI TCATGA 1 cut(s) 480
Cfr13I GGNCC 2 cut(s) 931, 1009
CseI GACGC 1 cut(s) 149
CsiI ACCWGGT 1 cut(s) 333
Csp6I GTAC 6 cut(s) 66, 241, 289, 495, 517, 821
CviAII CATG 5 cut(s) 157, 327, 370, 481, 605
CviJI RGCY 9 cut(s) 7, 246, 296, 382, 551, 610, 698, 725, 766
CviKI_1 RGCY 9 cut(s) 7, 246, 296, 382, 551, 610, 698, 725, 766
CviQI GTAC 6 cut(s) 66, 241, 289, 495, 517, 821
DdeI CTNAG 7 cut(s) 69, 344, 388, 486, 509, 721, 909
DpnI GATC 5 cut(s) 96, 303, 575, 630, 926
DpnII GATC 5 cut(s) 94, 301, 573, 628, 924
EaeI YGGCCR 1 cut(s) 244
EagI CGGCCG 1 cut(s) 244
Eam1104I CTCTTC 2 cut(s) 303, 768
EarI CTCTTC 2 cut(s) 303, 768
EciI GGCGGA 1 cut(s) 355
EclXI CGGCCG 1 cut(s) 244
Eco130I CCWWGG 2 cut(s) 837, 974
Eco147I AGGCCT 1 cut(s) 551
Eco24I GRGCYC 1 cut(s) 612
Eco31I GGTCTC 1 cut(s) 976
Eco47I GGWCC 2 cut(s) 931, 1009
Eco52I CGGCCG 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 425
Eco91I GGTNACC 2 cut(s) 76, 832
EcoO109I RGGNCCY 2 cut(s) 931, 1009
EcoO65I GGTNACC 2 cut(s) 76, 832
EcoRII CCWGG 2 cut(s) 131, 333
EcoT14I CCWWGG 2 cut(s) 837, 974
EcoT38I GRGCYC 1 cut(s) 612
ErhI CCWWGG 2 cut(s) 837, 974
Esp3I CGTCTC 1 cut(s) 447
FaeI CATG 5 cut(s) 160, 330, 373, 484, 608
FaqI GGGAC 2 cut(s) 394, 705
FatI CATG 5 cut(s) 156, 326, 369, 480, 604
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 2 cut(s) 640, 699
FokI GGATG 2 cut(s) 74, 181
FriOI GRGCYC 1 cut(s) 612
Fsp4HI GCNGC 2 cut(s) 640, 699
FspBI CTAG 3 cut(s) 737, 824, 975
GluI GCNGC 2 cut(s) 640, 699
GsaI CCCAGC 1 cut(s) 238
HaeIII GGCC 2 cut(s) 246, 551
HapII CCGG 4 cut(s) 270, 761, 897, 935
HgaI GACGC 1 cut(s) 149
Hin1II CATG 5 cut(s) 160, 330, 373, 484, 608
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HinfI GANTC 6 cut(s) 42, 362, 505, 619, 661, 715
HpaII CCGG 4 cut(s) 270, 761, 897, 935
HphI GGTGA 6 cut(s) 88, 89, 685, 695, 844, 952
Hpy166II GTNNAC 4 cut(s) 289, 655, 796, 821
Hpy188III TCNNGA 5 cut(s) 143, 305, 481, 577, 955
Hpy8I GTNNAC 4 cut(s) 289, 655, 796, 821
Hpy99I CGWCG 6 cut(s) 165, 168, 221, 257, 1040, 1043
HpyAV CCTTC 6 cut(s) 32, 52, 173, 223, 541, 996
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4IV ACGT 2 cut(s) 444, 537
HpyCH4V TGCA 7 cut(s) 185, 415, 439, 598, 639, 968, 992
HpyF3I CTNAG 7 cut(s) 69, 344, 388, 486, 509, 721, 909
HpySE526I ACGT 2 cut(s) 444, 537
Hsp92II CATG 5 cut(s) 160, 330, 373, 484, 608
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 5 cut(s) 94, 301, 573, 628, 924
LguI GCTCTTC 1 cut(s) 768
LmnI GCTCC 2 cut(s) 4, 763
Lsp1109I GCAGC 2 cut(s) 651, 685
LweI GCATC 1 cut(s) 159
MabI ACCWGGT 1 cut(s) 333
MaeI CTAG 3 cut(s) 737, 824, 975
MaeII ACGT 2 cut(s) 444, 537
MaeIII GTNAC 7 cut(s) 76, 143, 248, 347, 683, 832, 889
MalI GATC 5 cut(s) 96, 303, 575, 630, 926
MboI GATC 5 cut(s) 94, 301, 573, 628, 924
MboII GAAGA 6 cut(s) 320, 535, 568, 688, 724, 785
MfeI CAATTG 1 cut(s) 634
MflI RGATCY 2 cut(s) 573, 628
MhlI GDGCHC 1 cut(s) 612
MluCI AATT 5 cut(s) 138, 475, 634, 749, 1054
MlyI GAGTC 1 cut(s) 709
MmeI TCCRAC 3 cut(s) 146, 174, 567
MseI TTAA 1 cut(s) 1057
MslI CAYNNNNRTG 3 cut(s) 320, 603, 788
MspA1I CMGCKG 1 cut(s) 238
MspI CCGG 4 cut(s) 270, 761, 897, 935
MspR9I CCNGG 4 cut(s) 133, 335, 898, 935
MunI CAATTG 1 cut(s) 634
Mva1269I GAATGC 1 cut(s) 863
MvaI CCWGG 2 cut(s) 133, 335
NciI CCSGG 2 cut(s) 898, 935
NdeII GATC 5 cut(s) 94, 301, 573, 628, 924
NlaIII CATG 5 cut(s) 160, 330, 373, 484, 608
NlaIV GGNNCC 7 cut(s) 6, 268, 332, 759, 933, 962, 1011
NmeAIII GCCGAG 1 cut(s) 198
NmuCI GTSAC 4 cut(s) 76, 143, 683, 832
NspI RCATGY 1 cut(s) 160
PagI TCATGA 1 cut(s) 480
PceI AGGCCT 1 cut(s) 551
PciSI GCTCTTC 1 cut(s) 768
PcsI WCGNNNNNNNCGW 3 cut(s) 249, 858, 1044
PctI GAATGC 1 cut(s) 863
PfeI GAWTC 5 cut(s) 42, 362, 505, 619, 661
PkrI GCNGC 2 cut(s) 641, 700
PleI GAGTC 1 cut(s) 709
PpsI GAGTC 1 cut(s) 709
PpuMI RGGWCCY 2 cut(s) 931, 1009
PshAI GACNNNNGTC 1 cut(s) 159
Psp1406I AACGTT 1 cut(s) 537
Psp5II RGGWCCY 2 cut(s) 931, 1009
Psp6I CCWGG 2 cut(s) 131, 333
PspEI GGTNACC 2 cut(s) 76, 832
PspFI CCCAGC 1 cut(s) 234
PspGI CCWGG 2 cut(s) 131, 333
PspN4I GGNNCC 7 cut(s) 6, 268, 332, 759, 933, 962, 1011
PspPI GGNCC 2 cut(s) 931, 1009
PspPPI RGGWCCY 2 cut(s) 931, 1009
PstI CTGCAG 1 cut(s) 417
PsuI RGATCY 2 cut(s) 573, 628
RsaI GTAC 6 cut(s) 67, 242, 290, 496, 518, 822
RsaNI GTAC 6 cut(s) 66, 241, 289, 495, 517, 821
RseI CAYNNNNRTG 3 cut(s) 320, 603, 788
SapI GCTCTTC 1 cut(s) 768
SaqAI TTAA 1 cut(s) 1057
SatI GCNGC 2 cut(s) 640, 699
Sau3AI GATC 5 cut(s) 94, 301, 573, 628, 924
Sau96I GGNCC 2 cut(s) 931, 1009
SchI GAGTC 1 cut(s) 709
ScrFI CCNGG 4 cut(s) 133, 335, 898, 935
SduI GDGCHC 1 cut(s) 612
SexAI ACCWGGT 1 cut(s) 333
SfaNI GCATC 1 cut(s) 159
SfcI CTRYAG 2 cut(s) 413, 702
SinI GGWCC 2 cut(s) 931, 1009
SmiMI CAYNNNNRTG 3 cut(s) 320, 603, 788
SmlI CTYRAG 1 cut(s) 1004
SmoI CTYRAG 1 cut(s) 1004
Sse9I AATT 5 cut(s) 138, 475, 634, 749, 1054
SseBI AGGCCT 1 cut(s) 551
SsiI CCGC 3 cut(s) 238, 273, 366
SspI AATATT 1 cut(s) 868
SspMI CTAG 3 cut(s) 737, 824, 975
StuI AGGCCT 1 cut(s) 551
StyD4I CCNGG 4 cut(s) 131, 333, 896, 933
StyI CCWWGG 2 cut(s) 837, 974
TaaI ACNGT 1 cut(s) 113
TaiI ACGT 2 cut(s) 447, 540
TaqI TCGA 3 cut(s) 219, 542, 954
TaqII GACCGA 2 cut(s) 95, 389
TasI AATT 5 cut(s) 138, 475, 634, 749, 1054
TatI WGTACW 2 cut(s) 516, 820
TfiI GAWTC 5 cut(s) 42, 362, 505, 619, 661
Tru1I TTAA 1 cut(s) 1057
Tru9I TTAA 1 cut(s) 1057
TscAI CASTG 3 cut(s) 505, 738, 790
TseFI GTSAC 4 cut(s) 76, 143, 683, 832
TseI GCWGC 2 cut(s) 639, 698
Tsp45I GTSAC 4 cut(s) 76, 143, 683, 832
TspDTI ATGAA 6 cut(s) 71, 343, 469, 560, 611, 786
TspRI CASTG 3 cut(s) 505, 738, 790
VpaK11BI GGWCC 2 cut(s) 931, 1009
XapI RAATTY 3 cut(s) 138, 475, 749
XceI RCATGY 1 cut(s) 160
XmaJI CCTAGG 1 cut(s) 974
XspI CTAG 3 cut(s) 737, 824, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.