Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001260

Physical Location & Seq

Genomic Coordinates Reverse (-)

35844644 .. 35857416

Gene Structure 12773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG323900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGGGAAGAGTGAAATTGTTGAGGTAGCTGCTTCTCCTAGGGAAGGCAAGGGTAGTGGTCAGATTGATAACCACAAAGAATCTAGCGCACGGAGGGGAGAAGCATCTATAAAACATAGAGTTGGGGAACAAGTTTCTATTGCTGAAAAGCTTGAACAAGATAATCTGAGATTGGAATCTCAATCGAGAAGTTTGATTTGCTGGAAAGCATCCAGAGTAGCTCGTCGAAAGGTGAAGATTGGTGACTTGGGACTGGCTGCTATAGTAGGGAAGACTCACTCAGCTCATTCAGTGCTAGGCACACCAGAATTTATGGCACCAGAGCTTTATGAAGAGCATTACACTGAAATGGTGGACATATACTCATTTGGAATGTGTGTACTAGAGATGGTGACCTTGGAAATGCCCTACGGCGAATGCGACAATATTGCCAAAATATACAAGAAGGTAACCTCCGGGGTCAGACCTCAGGCCTTGAACAAGATCAAGGACCCGGAGGTGAGGGCATTTGTCGAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

173

Amino Acids

19.26

Weight (kDa)

7.73

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	75 - 152	6.2e-15	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	75 - 162	1.4e-10	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55560
fragaria_vesca	FvH4_3g22150 FvH4_6g41240
malus_domestica	MD03G1189000.v1.1 MD09G1121400.v1.1 MD11G1205200.v1.1 MD17G1112400.v1.1
prunus_persica	Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.4G232100_v2.0.a1 Prupe.4G232100_v2.0.a1
pyrus_communis	pycom03g14190 pycom03g14210 pycom09g04580 pycom11g17800 pycom17g10410
rosa_chinensis	RchiOBHm_Chr2g0156791 RchiOBHm_Chr5g0038001 RchiOBHm_Chr5g0038041 RchiOBHm_Chr5g0042541
rosa_laevigata	RLG00000020942 RLG00000034135
rosa_multiflora	Rmu_co8331393.1_g000001 Rmu_co8390513.1_g000001 Rmu_sc0002670.1_g000011 Rmu_sc0008149.1_g000008 Rmu_sc0008278.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038120 Rroxscaffold_1G00042890 Rroxscaffold_2G00092720
rosa_rugosa	Rorug02G0456200 Rorug05G0170100 Rorug05G0201300 Rorug05G0201400
rosa_samantha	Rh2AG521800 Rh2BG535200 Rh2CG506700 Rh2DG544200 Rh5BG261300 Rh5BG261600 Rh5BG291700 Rh5CG293600 Rh5CG323900 Rh5DG270500 Rh5DG270600 Rh5DG301500
rosa_wichuraiana	Rw2G043080 Rw5G023930 Rw5G024110 Rw5G024140 Rw5G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	308
AfaI	GTAC	1 cut(s)	381
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	2 cut(s)	155, 478
AluBI	AGCT	5 cut(s)	29, 151, 221, 284, 325
AluI	AGCT	5 cut(s)	29, 151, 221, 284, 325
AoxI	GGCC	1 cut(s)	471
ApeKI	GCWGC	2 cut(s)	29, 257
ApoI	RAATTY	1 cut(s)	308
AspA2I	CCTAGG	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	490
AsuC2I	CCSGG	2 cut(s)	457, 494
AsuHPI	GGTGA	4 cut(s)	244, 254, 403, 511
AvaII	GGWCC	1 cut(s)	490
AvrII	CCTAGG	1 cut(s)	38
AxyI	CCTNAGG	1 cut(s)	468
BanI	GGYRCC	1 cut(s)	316
BbsI	GAAGAC	1 cut(s)	278
BbvI	GCAGC	2 cut(s)	16, 244
BccI	CCATC	1 cut(s)	382
BceAI	ACGGC	1 cut(s)	427
BcgI	CGANNNNNNTGC	2 cut(s)	410, 444
BcnI	CCSGG	2 cut(s)	457, 494
BfaI	CTAG	4 cut(s)	39, 84, 296, 383
BfmI	CTRYAG	1 cut(s)	261
BisI	GCNGC	2 cut(s)	30, 258
BlnI	CCTAGG	1 cut(s)	38
BlsI	GCNGC	2 cut(s)	31, 259
Bme1390I	CCNGG	2 cut(s)	457, 494
Bme18I	GGWCC	1 cut(s)	490
BmgT120I	GGNCC	1 cut(s)	490
BmiI	GGNNCC	2 cut(s)	318, 492
BmrFI	CCNGG	2 cut(s)	457, 494
BmsI	GCATC	2 cut(s)	113, 218
BpiI	GAAGAC	1 cut(s)	278
BpuMI	CCSGG	2 cut(s)	457, 494
BsaBI	GATNNNNATC	1 cut(s)	175
BsaJI	CCNNGG	3 cut(s)	38, 396, 456
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	258
Bse21I	CCTNAGG	1 cut(s)	468
Bse8I	GATNNNNATC	1 cut(s)	175
BseDI	CCNNGG	3 cut(s)	38, 396, 456
BseGI	GGATG	1 cut(s)	209
BseJI	GATNNNNATC	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	3 cut(s)	158, 294, 482
BseNI	ACTGG	1 cut(s)	258
BseXI	GCAGC	2 cut(s)	16, 244
BshFI	GGCC	1 cut(s)	473
BshNI	GGYRCC	1 cut(s)	316
BsiSI	CCGG	2 cut(s)	456, 494
BslFI	GGGAC	1 cut(s)	264
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	264
BsmI	GAATGC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	473
Bsp143I	GATC	1 cut(s)	483
BspANI	GGCC	1 cut(s)	473
BspCNI	CTCAG	3 cut(s)	159, 293, 481
BspLI	GGNNCC	2 cut(s)	318, 492
BspQI	GCTCTTC	1 cut(s)	327
BspT107I	GGYRCC	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	258
BssECI	CCNNGG	3 cut(s)	38, 396, 456
BssMI	GATC	1 cut(s)	483
BssT1I	CCWWGG	2 cut(s)	38, 396
Bst6I	CTCTTC	2 cut(s)	2, 327
BstDEI	CTNAG	3 cut(s)	167, 280, 468
BstEII	GGTNACC	2 cut(s)	391, 448
BstENI	CCTNNNNNAGG	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	209
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	1 cut(s)	486
BstMBI	GATC	1 cut(s)	483
BstPI	GGTNACC	2 cut(s)	391, 448
BstSCI	CCNGG	2 cut(s)	455, 492
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	2 cut(s)	16, 244
BstV2I	GAAGAC	1 cut(s)	278
Bsu36I	CCTNAGG	1 cut(s)	468
BsuRI	GGCC	1 cut(s)	473
BtsCI	GGATG	1 cut(s)	209
BtsIMutI	CAGTG	2 cut(s)	297, 342
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	490
Csp6I	GTAC	1 cut(s)	380
CspCI	CAANNNNNGTGG	2 cut(s)	37, 72
CviJI	RGCY	7 cut(s)	29, 151, 221, 257, 284, 325, 473
CviKI_1	RGCY	7 cut(s)	29, 151, 221, 257, 284, 325, 473
CviQI	GTAC	1 cut(s)	380
DdeI	CTNAG	3 cut(s)	167, 280, 468
DpnI	GATC	1 cut(s)	485
DpnII	GATC	1 cut(s)	483
Eam1104I	CTCTTC	2 cut(s)	2, 327
EarI	CTCTTC	2 cut(s)	2, 327
Eco130I	CCWWGG	2 cut(s)	38, 396
Eco147I	AGGCCT	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	490
Eco81I	CCTNAGG	1 cut(s)	468
Eco91I	GGTNACC	2 cut(s)	391, 448
EcoNI	CCTNNNNNAGG	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	490
EcoO65I	GGTNACC	2 cut(s)	391, 448
EcoT14I	CCWWGG	2 cut(s)	38, 396
ErhI	CCWWGG	2 cut(s)	38, 396
FaiI	YATR	8 cut(s)	110, 117, 263, 314, 330, 359, 361, 439
FaqI	GGGAC	1 cut(s)	264
Fnu4HI	GCNGC	2 cut(s)	30, 258
FokI	GGATG	1 cut(s)	196
Fsp4HI	GCNGC	2 cut(s)	30, 258
FspBI	CTAG	4 cut(s)	39, 84, 296, 383
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	2 cut(s)	30, 258
HaeIII	GGCC	1 cut(s)	473
HapII	CCGG	2 cut(s)	456, 494
HhaI	GCGC	1 cut(s)	89
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	3 cut(s)	80, 176, 274
HpaII	CCGG	2 cut(s)	456, 494
HphI	GGTGA	4 cut(s)	244, 254, 403, 511
Hpy166II	GTNNAC	2 cut(s)	355, 380
Hpy188I	TCNGA	3 cut(s)	63, 168, 464
Hpy188III	TCNNGA	3 cut(s)	186, 213, 514
Hpy8I	GTNNAC	2 cut(s)	355, 380
Hpy99I	CGWCG	1 cut(s)	228
HpyAV	CCTTC	2 cut(s)	38, 439
HpyF3I	CTNAG	3 cut(s)	167, 280, 468
HspAI	GCGC	1 cut(s)	87
Kzo9I	GATC	1 cut(s)	483
LguI	GCTCTTC	1 cut(s)	327
LpnPI	CCDG	8 cut(s)	187, 226, 239, 318, 333, 455, 469, 507
Lsp1109I	GCAGC	2 cut(s)	16, 244
LweI	GCATC	2 cut(s)	113, 218
MaeI	CTAG	4 cut(s)	39, 84, 296, 383
MaeIII	GTNAC	3 cut(s)	242, 391, 448
MalI	GATC	1 cut(s)	485
MboI	GATC	1 cut(s)	483
MboII	GAAGA	4 cut(s)	19, 247, 283, 344
MluCI	AATT	2 cut(s)	15, 308
MlyI	GAGTC	1 cut(s)	268
MnlI	CCTC	7 cut(s)	16, 87, 463, 477, 490, 495, 510
MslI	CAYNNNNRTG	1 cut(s)	347
MspI	CCGG	2 cut(s)	456, 494
MspR9I	CCNGG	2 cut(s)	457, 494
Mva1269I	GAATGC	1 cut(s)	422
NciI	CCSGG	2 cut(s)	457, 494
NdeII	GATC	1 cut(s)	483
NlaIV	GGNNCC	2 cut(s)	318, 492
NmuCI	GTSAC	2 cut(s)	242, 391
PceI	AGGCCT	1 cut(s)	473
PciSI	GCTCTTC	1 cut(s)	327
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PctI	GAATGC	1 cut(s)	422
PfeI	GAWTC	2 cut(s)	80, 176
PkrI	GCNGC	2 cut(s)	31, 259
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
PpuMI	RGGWCCY	1 cut(s)	490
Psp5II	RGGWCCY	1 cut(s)	490
PspEI	GGTNACC	2 cut(s)	391, 448
PspN4I	GGNNCC	2 cut(s)	318, 492
PspPI	GGNCC	1 cut(s)	490
PspPPI	RGGWCCY	1 cut(s)	490
RsaI	GTAC	1 cut(s)	381
RsaNI	GTAC	1 cut(s)	380
RseI	CAYNNNNRTG	1 cut(s)	347
SapI	GCTCTTC	1 cut(s)	327
SatI	GCNGC	2 cut(s)	30, 258
Sau3AI	GATC	1 cut(s)	483
Sau96I	GGNCC	1 cut(s)	490
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	2 cut(s)	457, 494
SfaNI	GCATC	2 cut(s)	113, 218
SfcI	CTRYAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	490
SmiMI	CAYNNNNRTG	1 cut(s)	347
Sse9I	AATT	2 cut(s)	15, 308
SseBI	AGGCCT	1 cut(s)	473
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	4 cut(s)	39, 84, 296, 383
StuI	AGGCCT	1 cut(s)	473
StyD4I	CCNGG	2 cut(s)	455, 492
StyI	CCWWGG	2 cut(s)	38, 396
TaqI	TCGA	3 cut(s)	185, 226, 513
TasI	AATT	2 cut(s)	15, 308
TatI	WGTACW	1 cut(s)	379
TfiI	GAWTC	2 cut(s)	80, 176
TscAI	CASTG	2 cut(s)	297, 349
TseFI	GTSAC	2 cut(s)	242, 391
TseI	GCWGC	2 cut(s)	29, 257
Tsp45I	GTSAC	2 cut(s)	242, 391
TspDTI	ATGAA	1 cut(s)	345
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	2 cut(s)	297, 349
VpaK11BI	GGWCC	1 cut(s)	490
XagI	CCTNNNNNAGG	1 cut(s)	42
XapI	RAATTY	1 cut(s)	308
XmaJI	CCTAGG	1 cut(s)	38
XspI	CTAG	4 cut(s)	39, 84, 296, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.