Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001260

Physical Location & Seq

Genomic Coordinates Reverse (-)

37911762 .. 37913236

Gene Structure 1475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG301500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCCGAGTGAAGGTGCAGACCAGTCGGAGGGAGACAGCGAACCCTTCGTCGAAATAGACCCAACCCAGCGGTACGGCCGTTACGACGAGCTACTGGGTTCCGGCGCAGTCAAAAAGGTGTACCGAGCTTTTGATCAAGAAGAGGGCATAGAGGTGGCATGGAACCAGGTCAAACTGAGTAACTTCATCAACGATTCCGCCATGACCGAAAGGCTTTACTCTGAGGTTCGGTTGCTGAAGTCCCTGAAGAACAAAAACATCATTGCTTTGCATAACGTGTGGAGAGACGAGGAGAAAAACATTCTGAATTTCATGACTGAGGTTTGTACCAGTGGGAATCTGAGGGAGTACAGGAAGAAGCACAAGAACGTTTCGATGAAGGCCTTGAAGAAGTGGTCGTTTCAGATCTTGAAAGGGTTGGAGTATTTGCATACGCATGAGCCCTGTGTGATTCATAGAGATCTCAATTGCAGCAATGTGTTTGTCAACGGGAATCTTGGCCAGGTGAAGATTGGTGACTTGGGACTGGCTGCTATAGTAGGGAAGACTCACTCAGCTCATTCAGTGCTAGGCACACCAGAATTTATGGCACCGGAGCTTTATGAAGAGCATTACACTGAAATGGTGGACATATACTCATTTGGAATGTGTGTACTAGAGATGGTGACCTTGGAAATGCCCTACGGCGAATGCGACAATATTGCCAAAATATACAAGAAGGTAACCTCCGGGGTCAGACCTCAGGCCTTGAACAAGATCAAGGACCCGGAGGTGAGGGCATTTGTCGAGAGGTGCCTTGCACAACCTAGGGCGAGACCCTCTGCAACCAAACTCCTCAAGGATCCGTTCTTTGATGAGGTTGATGACGACGACGATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

293

Amino Acids

33.4

Weight (kDa)

5.4

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	29 - 284	3.3e-51	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	29 - 280	3.7e-38	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55560
fragaria_vesca	FvH4_3g22150 FvH4_6g41240
malus_domestica	MD03G1189000.v1.1 MD09G1121400.v1.1 MD11G1205200.v1.1 MD17G1112400.v1.1
prunus_persica	Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.4G232100_v2.0.a1 Prupe.4G232100_v2.0.a1
pyrus_communis	pycom03g14190 pycom03g14210 pycom09g04580 pycom11g17800 pycom17g10410
rosa_chinensis	RchiOBHm_Chr2g0156791 RchiOBHm_Chr5g0038001 RchiOBHm_Chr5g0038041 RchiOBHm_Chr5g0042541
rosa_laevigata	RLG00000020942 RLG00000034135
rosa_multiflora	Rmu_co8331393.1_g000001 Rmu_co8390513.1_g000001 Rmu_sc0002670.1_g000011 Rmu_sc0008149.1_g000008 Rmu_sc0008278.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038120 Rroxscaffold_1G00042890 Rroxscaffold_2G00092720
rosa_rugosa	Rorug02G0456200 Rorug05G0170100 Rorug05G0201300 Rorug05G0201400
rosa_samantha	Rh2AG521800 Rh2BG535200 Rh2CG506700 Rh2DG544200 Rh5BG261300 Rh5BG261600 Rh5BG291700 Rh5CG293600 Rh5CG323900 Rh5DG270500 Rh5DG270600 Rh5DG301500
rosa_wichuraiana	Rw2G043080 Rw5G023930 Rw5G024110 Rw5G024140 Rw5G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	589, 792
AciI	CCGC	2 cut(s)	70, 198
AclI	AACGTT	1 cut(s)	369
AclWI	GGATC	2 cut(s)	836, 849
AcoI	YGGCCR	2 cut(s)	76, 499
AcsI	RAATTY	2 cut(s)	307, 581
AcuI	CTGAAG	2 cut(s)	257, 266
AfaI	GTAC	5 cut(s)	74, 122, 328, 350, 654
AfiI	CCNNNNNNNGG	2 cut(s)	11, 28
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	3 cut(s)	388, 412, 751
AjnI	CCWGG	2 cut(s)	165, 501
AluBI	AGCT	4 cut(s)	91, 128, 557, 598
AluI	AGCT	4 cut(s)	91, 128, 557, 598
Alw26I	GTCTC	3 cut(s)	27, 279, 808
AlwI	GGATC	2 cut(s)	836, 849
AoxI	GGCC	4 cut(s)	76, 381, 499, 744
ApeKI	GCWGC	2 cut(s)	471, 530
ApoI	RAATTY	2 cut(s)	307, 581
ArsI	GACNNNNNNTTYG	2 cut(s)	33, 65
AspA2I	CCTAGG	1 cut(s)	806
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	763
AsuC2I	CCSGG	2 cut(s)	730, 767
AsuHPI	GGTGA	4 cut(s)	517, 527, 676, 784
AvaII	GGWCC	1 cut(s)	763
AvrII	CCTAGG	1 cut(s)	806
AxyI	CCTNAGG	1 cut(s)	741
BaeI	ACNNNNGTAYC	2 cut(s)	64, 97
BalI	TGGCCA	1 cut(s)	501
BamHI	GGATCC	1 cut(s)	841
BanI	GGYRCC	2 cut(s)	589, 792
BanII	GRGCYC	1 cut(s)	444
BbsI	GAAGAC	1 cut(s)	551
BbvI	GCAGC	2 cut(s)	483, 517
BccI	CCATC	1 cut(s)	655
BceAI	ACGGC	3 cut(s)	63, 91, 700
BcgI	CGANNNNNNTGC	4 cut(s)	6, 40, 683, 717
BciT130I	CCWGG	2 cut(s)	167, 503
BclI	TGATCA	1 cut(s)	133
BcnI	CCSGG	2 cut(s)	730, 767
BcoDI	GTCTC	3 cut(s)	27, 279, 808
BfaI	CTAG	3 cut(s)	569, 656, 807
BfmI	CTRYAG	1 cut(s)	534
BglII	AGATCT	2 cut(s)	405, 460
BisI	GCNGC	2 cut(s)	472, 531
BlnI	CCTAGG	1 cut(s)	806
BlsI	GCNGC	2 cut(s)	473, 532
Bme1390I	CCNGG	4 cut(s)	167, 503, 730, 767
Bme18I	GGWCC	1 cut(s)	763
BmgT120I	GGNCC	1 cut(s)	763
BmiI	GGNNCC	6 cut(s)	100, 164, 591, 765, 794, 843
BmrFI	CCNGG	4 cut(s)	167, 503, 730, 767
BmrI	ACTGGG	1 cut(s)	104
BmuI	ACTGGG	1 cut(s)	104
BpiI	GAAGAC	1 cut(s)	551
BpuEI	CTTGAG	1 cut(s)	821
BpuMI	CCSGG	2 cut(s)	730, 767
BsaI	GGTCTC	1 cut(s)	808
BsaJI	CCNNGG	3 cut(s)	669, 729, 806
BsaWI	WCCGGW	1 cut(s)	592
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 28
Bse1I	ACTGG	4 cut(s)	22, 99, 330, 531
Bse21I	CCTNAGG	1 cut(s)	741
Bse3DI	GCAATG	2 cut(s)	261, 481
BseBI	CCWGG	2 cut(s)	167, 503
BseDI	CCNNGG	3 cut(s)	669, 729, 806
BseLI	CCNNNNNNNGG	2 cut(s)	11, 28
BseMI	GCAATG	2 cut(s)	261, 481
BseMII	CTCAG	6 cut(s)	167, 213, 309, 332, 567, 755
BseNI	ACTGG	4 cut(s)	22, 99, 330, 531
BseRI	GAGGAG	2 cut(s)	305, 824
BseX3I	CGGCCG	1 cut(s)	76
BseXI	GCAGC	2 cut(s)	483, 517
BseYI	CCCAGC	1 cut(s)	66
BsgI	GTGCAG	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	4 cut(s)	78, 383, 501, 746
BshNI	GGYRCC	2 cut(s)	589, 792
BsiEI	CGRYCG	1 cut(s)	79
BsiSI	CCGG	4 cut(s)	102, 593, 729, 767
BslFI	GGGAC	2 cut(s)	226, 537
BslI	CCNNNNNNNGG	2 cut(s)	11, 28
BsmAI	GTCTC	3 cut(s)	27, 279, 808
BsmBI	CGTCTC	1 cut(s)	279
BsmFI	GGGAC	2 cut(s)	226, 537
BsmI	GAATGC	1 cut(s)	695
BsnI	GGCC	4 cut(s)	78, 383, 501, 746
Bso31I	GGTCTC	1 cut(s)	808
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	5 cut(s)	133, 405, 460, 756, 841
BspACI	CCGC	2 cut(s)	70, 198
BspANI	GGCC	4 cut(s)	78, 383, 501, 746
BspCNI	CTCAG	6 cut(s)	168, 214, 310, 333, 566, 754
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	6 cut(s)	100, 164, 591, 765, 794, 843
BspPI	GGATC	2 cut(s)	836, 849
BspQI	GCTCTTC	1 cut(s)	600
BspT107I	GGYRCC	2 cut(s)	589, 792
BspTNI	GGTCTC	1 cut(s)	808
BsrDI	GCAATG	2 cut(s)	261, 481
BsrI	ACTGG	4 cut(s)	22, 99, 330, 531
BssECI	CCNNGG	3 cut(s)	669, 729, 806
BssMI	GATC	5 cut(s)	133, 405, 460, 756, 841
BssT1I	CCWWGG	2 cut(s)	669, 806
Bst2UI	CCWGG	2 cut(s)	167, 503
Bst6I	CTCTTC	2 cut(s)	135, 600
BstDEI	CTNAG	6 cut(s)	176, 222, 318, 341, 553, 741
BstEII	GGTNACC	2 cut(s)	664, 721
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	5 cut(s)	136, 408, 463, 759, 844
BstMAI	GTCTC	3 cut(s)	27, 279, 808
BstMBI	GATC	5 cut(s)	133, 405, 460, 756, 841
BstMCI	CGRYCG	1 cut(s)	79
BstNI	CCWGG	2 cut(s)	167, 503
BstPI	GGTNACC	2 cut(s)	664, 721
BstSCI	CCNGG	4 cut(s)	165, 501, 728, 765
BstSFI	CTRYAG	1 cut(s)	534
BstV1I	GCAGC	2 cut(s)	483, 517
BstV2I	GAAGAC	1 cut(s)	551
BstX2I	RGATCY	3 cut(s)	405, 460, 841
BstYI	RGATCY	3 cut(s)	405, 460, 841
BstZI	CGGCCG	1 cut(s)	76
Bsu36I	CCTNAGG	1 cut(s)	741
BsuRI	GGCC	4 cut(s)	78, 383, 501, 746
BtsIMutI	CAGTG	3 cut(s)	337, 570, 615
CciI	TCATGA	1 cut(s)	312
CfoI	GCGC	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	763
CsiI	ACCWGGT	1 cut(s)	165
Csp6I	GTAC	5 cut(s)	73, 121, 327, 349, 653
CviAII	CATG	4 cut(s)	159, 202, 313, 437
CviQI	GTAC	5 cut(s)	73, 121, 327, 349, 653
DdeI	CTNAG	6 cut(s)	176, 222, 318, 341, 553, 741
DpnI	GATC	5 cut(s)	135, 407, 462, 758, 843
DpnII	GATC	5 cut(s)	133, 405, 460, 756, 841
EaeI	YGGCCR	2 cut(s)	76, 499
EagI	CGGCCG	1 cut(s)	76
Eam1104I	CTCTTC	2 cut(s)	135, 600
EarI	CTCTTC	2 cut(s)	135, 600
EciI	GGCGGA	1 cut(s)	187
EclXI	CGGCCG	1 cut(s)	76
Eco130I	CCWWGG	2 cut(s)	669, 806
Eco147I	AGGCCT	2 cut(s)	383, 746
Eco24I	GRGCYC	1 cut(s)	444
Eco31I	GGTCTC	1 cut(s)	808
Eco47I	GGWCC	1 cut(s)	763
Eco52I	CGGCCG	1 cut(s)	76
Eco57I	CTGAAG	2 cut(s)	257, 266
Eco81I	CCTNAGG	1 cut(s)	741
Eco91I	GGTNACC	2 cut(s)	664, 721
EcoO109I	RGGNCCY	1 cut(s)	763
EcoO65I	GGTNACC	2 cut(s)	664, 721
EcoRII	CCWGG	2 cut(s)	165, 501
EcoT14I	CCWWGG	2 cut(s)	669, 806
EcoT38I	GRGCYC	1 cut(s)	444
ErhI	CCWWGG	2 cut(s)	669, 806
Esp3I	CGTCTC	1 cut(s)	279
FaeI	CATG	4 cut(s)	162, 205, 316, 440
FaqI	GGGAC	2 cut(s)	226, 537
FatI	CATG	4 cut(s)	158, 201, 312, 436
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	472, 531
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	2 cut(s)	472, 531
FspBI	CTAG	3 cut(s)	569, 656, 807
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	2 cut(s)	472, 531
GsaI	CCCAGC	1 cut(s)	70
HaeIII	GGCC	4 cut(s)	78, 383, 501, 746
HapII	CCGG	4 cut(s)	102, 593, 729, 767
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	4 cut(s)	162, 205, 316, 440
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HinfI	GANTC	5 cut(s)	194, 337, 451, 493, 547
HpaII	CCGG	4 cut(s)	102, 593, 729, 767
HphI	GGTGA	4 cut(s)	517, 527, 676, 784
Hpy166II	GTNNAC	4 cut(s)	121, 487, 628, 653
Hpy188I	TCNGA	6 cut(s)	28, 223, 306, 342, 405, 737
Hpy188III	TCNNGA	4 cut(s)	137, 313, 409, 787
Hpy8I	GTNNAC	4 cut(s)	121, 487, 628, 653
Hpy99I	CGWCG	4 cut(s)	53, 89, 872, 875
HpyAV	CCTTC	4 cut(s)	5, 55, 373, 712
HpyCH4IV	ACGT	2 cut(s)	276, 369
HpyCH4V	TGCA	6 cut(s)	17, 271, 430, 471, 800, 824
HpyF3I	CTNAG	6 cut(s)	176, 222, 318, 341, 553, 741
HpySE526I	ACGT	2 cut(s)	276, 369
Hsp92II	CATG	4 cut(s)	162, 205, 316, 440
HspAI	GCGC	1 cut(s)	105
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	5 cut(s)	133, 405, 460, 756, 841
LguI	GCTCTTC	1 cut(s)	600
LmnI	GCTCC	1 cut(s)	595
Lsp1109I	GCAGC	2 cut(s)	483, 517
MabI	ACCWGGT	1 cut(s)	165
MaeI	CTAG	3 cut(s)	569, 656, 807
MaeII	ACGT	2 cut(s)	276, 369
MaeIII	GTNAC	5 cut(s)	80, 179, 515, 664, 721
MalI	GATC	5 cut(s)	135, 407, 462, 758, 843
MboI	GATC	5 cut(s)	133, 405, 460, 756, 841
MboII	GAAGA	7 cut(s)	152, 259, 367, 400, 520, 556, 617
MfeI	CAATTG	1 cut(s)	466
MflI	RGATCY	3 cut(s)	405, 460, 841
MhlI	GDGCHC	1 cut(s)	444
MlsI	TGGCCA	1 cut(s)	501
MluCI	AATT	3 cut(s)	307, 466, 581
MluNI	TGGCCA	1 cut(s)	501
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	2 cut(s)	6, 399
Mox20I	TGGCCA	1 cut(s)	501
MscI	TGGCCA	1 cut(s)	501
MslI	CAYNNNNRTG	3 cut(s)	152, 435, 620
Msp20I	TGGCCA	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	70
MspI	CCGG	4 cut(s)	102, 593, 729, 767
MspR9I	CCNGG	4 cut(s)	167, 503, 730, 767
MunI	CAATTG	1 cut(s)	466
Mva1269I	GAATGC	1 cut(s)	695
MvaI	CCWGG	2 cut(s)	167, 503
NciI	CCSGG	2 cut(s)	730, 767
NdeII	GATC	5 cut(s)	133, 405, 460, 756, 841
NlaIII	CATG	4 cut(s)	162, 205, 316, 440
NlaIV	GGNNCC	6 cut(s)	100, 164, 591, 765, 794, 843
NmeAIII	GCCGAG	1 cut(s)	30
NmuCI	GTSAC	2 cut(s)	515, 664
PagI	TCATGA	1 cut(s)	312
PceI	AGGCCT	2 cut(s)	383, 746
PciSI	GCTCTTC	1 cut(s)	600
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 690
PctI	GAATGC	1 cut(s)	695
PfeI	GAWTC	4 cut(s)	194, 337, 451, 493
PkrI	GCNGC	2 cut(s)	473, 532
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
PpuMI	RGGWCCY	1 cut(s)	763
Psp1406I	AACGTT	1 cut(s)	369
Psp5II	RGGWCCY	1 cut(s)	763
Psp6I	CCWGG	2 cut(s)	165, 501
PspEI	GGTNACC	2 cut(s)	664, 721
PspFI	CCCAGC	1 cut(s)	66
PspGI	CCWGG	2 cut(s)	165, 501
PspN4I	GGNNCC	6 cut(s)	100, 164, 591, 765, 794, 843
PspPI	GGNCC	1 cut(s)	763
PspPPI	RGGWCCY	1 cut(s)	763
PsuI	RGATCY	3 cut(s)	405, 460, 841
RsaI	GTAC	5 cut(s)	74, 122, 328, 350, 654
RsaNI	GTAC	5 cut(s)	73, 121, 327, 349, 653
RseI	CAYNNNNRTG	3 cut(s)	152, 435, 620
SapI	GCTCTTC	1 cut(s)	600
SatI	GCNGC	2 cut(s)	472, 531
Sau3AI	GATC	5 cut(s)	133, 405, 460, 756, 841
Sau96I	GGNCC	1 cut(s)	763
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	4 cut(s)	167, 503, 730, 767
SduI	GDGCHC	1 cut(s)	444
SexAI	ACCWGGT	1 cut(s)	165
SfcI	CTRYAG	1 cut(s)	534
SinI	GGWCC	1 cut(s)	763
SmiMI	CAYNNNNRTG	3 cut(s)	152, 435, 620
SmlI	CTYRAG	1 cut(s)	836
SmoI	CTYRAG	1 cut(s)	836
Sse9I	AATT	3 cut(s)	307, 466, 581
SseBI	AGGCCT	2 cut(s)	383, 746
SsiI	CCGC	2 cut(s)	70, 198
SspI	AATATT	1 cut(s)	700
SspMI	CTAG	3 cut(s)	569, 656, 807
StuI	AGGCCT	2 cut(s)	383, 746
StyD4I	CCNGG	4 cut(s)	165, 501, 728, 765
StyI	CCWWGG	2 cut(s)	669, 806
TaiI	ACGT	2 cut(s)	279, 372
TaqI	TCGA	3 cut(s)	51, 374, 786
TaqII	GACCGA	1 cut(s)	221
TasI	AATT	3 cut(s)	307, 466, 581
TatI	WGTACW	2 cut(s)	348, 652
TfiI	GAWTC	4 cut(s)	194, 337, 451, 493
TscAI	CASTG	3 cut(s)	337, 570, 622
TseFI	GTSAC	2 cut(s)	515, 664
TseI	GCWGC	2 cut(s)	471, 530
Tsp45I	GTSAC	2 cut(s)	515, 664
TspDTI	ATGAA	5 cut(s)	175, 301, 392, 443, 618
TspGWI	ACGGA	1 cut(s)	834
TspRI	CASTG	3 cut(s)	337, 570, 622
VpaK11BI	GGWCC	1 cut(s)	763
XapI	RAATTY	2 cut(s)	307, 581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	509
XmaJI	CCTAGG	1 cut(s)	806
XspI	CTAG	3 cut(s)	569, 656, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.