Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001260

Physical Location & Seq

Genomic Coordinates Reverse (-)

15189353 .. 15190552

Gene Structure 1200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g22150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGACAAGCAAAGATCCTAATACTTTTGATCCAGACTCGGAACCATTTGTGGAGGTTGATCCAACGCGGCGTTTCGGGAGGTATGATGCTCTGCTTGGCAAGGGTGCTGTAAAAAAGGTGTACAGGGCATTCGATCAGCAGCAAGGTAACGAGGTGGCATGGAATAAGGTGTCGTTGAAGAACTTGAGCGACGATCCAGTACTTGCGAATCACATTGTCGCAGAGGTTAAACTATTGACAGAGCTGGATAACAAGTATATCATCGAATGTTACAGTGCTTGGAAGGACGGCAAGCGCAATACGTTGAACTTCGTAACAGAGGTGTGCAACTCTGGGAACCTGAGGGATTACAGGAAGAAGCATCATCGTGTGAATACCAAAGCTTTGAAGAAGTGGTCGAAGCAGGTGAAGATCGGTGATCTGGGATTTGCAGCAGCAGTGGGTAGGAGCCACAAAGCTAACTCTGTTATTGGGACGCCTGAGTTCATGGCACCTGAGCTATACGAGGAGGACTACAATGAGATGGTGGACATATACTCGTTTGGGATGTGTTTGCTGGAAATGGCAACGAGGGAGATACCATACAGTGAATGCGACTCTGTTGCCAAGATTTACAAGAAAGTCACAACTGGTATAAGGCCTGAATCCTTGTCCAAGGTGACCGATCCAGAGGTGAAGGCATTTATCGAGAAATCCTTGGGGCAGCCGAGGGCAAGACCTTCAGCCTCTGAGCTACTCAGAGACCCCTTCTTTTCTCAAGTCATAACCGAAGACCCTATTTTAAGCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

264

Amino Acids

29.77

Weight (kDa)

6.91

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	30 - 136	4.5e-13	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	30 - 136	3.6e-08	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	133 - 251	6.7e-19	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	133 - 247	3e-11	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55560
fragaria_vesca	FvH4_3g22150 FvH4_6g41240
malus_domestica	MD03G1189000.v1.1 MD09G1121400.v1.1 MD11G1205200.v1.1 MD17G1112400.v1.1
prunus_persica	Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.4G232100_v2.0.a1 Prupe.4G232100_v2.0.a1
pyrus_communis	pycom03g14190 pycom03g14210 pycom09g04580 pycom11g17800 pycom17g10410
rosa_chinensis	RchiOBHm_Chr2g0156791 RchiOBHm_Chr5g0038001 RchiOBHm_Chr5g0038041 RchiOBHm_Chr5g0042541
rosa_laevigata	RLG00000020942 RLG00000034135
rosa_multiflora	Rmu_co8331393.1_g000001 Rmu_co8390513.1_g000001 Rmu_sc0002670.1_g000011 Rmu_sc0008149.1_g000008 Rmu_sc0008278.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038120 Rroxscaffold_1G00042890 Rroxscaffold_2G00092720
rosa_rugosa	Rorug02G0456200 Rorug05G0170100 Rorug05G0201300 Rorug05G0201400
rosa_samantha	Rh2AG521800 Rh2BG535200 Rh2CG506700 Rh2DG544200 Rh5BG261300 Rh5BG261600 Rh5BG291700 Rh5CG293600 Rh5CG323900 Rh5DG270500 Rh5DG270600 Rh5DG301500
rosa_wichuraiana	Rw2G043080 Rw5G023930 Rw5G024110 Rw5G024140 Rw5G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	394
Acc36I	ACCTGC	1 cut(s)	394
AccB1I	GGYRCC	1 cut(s)	490
AccII	CGCG	1 cut(s)	67
AciI	CCGC	1 cut(s)	67
AclWI	GGATC	5 cut(s)	8, 23, 53, 188, 659
AcuI	CTGAAG	1 cut(s)	705
AcyI	GRCGYC	1 cut(s)	476
AfaI	GTAC	2 cut(s)	122, 201
AgsI	TTSAA	3 cut(s)	178, 307, 388
AluBI	AGCT	6 cut(s)	244, 383, 458, 499, 733, 786
AluI	AGCT	6 cut(s)	244, 383, 458, 499, 733, 786
Alw26I	GTCTC	1 cut(s)	735
AlwI	GGATC	5 cut(s)	8, 23, 53, 188, 659
AlwNI	CAGNNNCTG	1 cut(s)	728
AoxI	GGCC	1 cut(s)	638
ApeKI	GCWGC	4 cut(s)	139, 431, 434, 703
AspLEI	GCGC	1 cut(s)	297
AsuHPI	GGTGA	4 cut(s)	418, 428, 670, 685
AxyI	CCTNAGG	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	490
BbsI	GAAGAC	1 cut(s)	777
BbvI	GCAGC	4 cut(s)	151, 443, 446, 715
BccI	CCATC	1 cut(s)	517
BceAI	ACGGC	1 cut(s)	304
BcgI	CGANNNNNNTGC	2 cut(s)	584, 618
BcoDI	GTCTC	1 cut(s)	735
BfuAI	ACCTGC	1 cut(s)	394
BisI	GCNGC	5 cut(s)	68, 140, 432, 435, 704
BlsI	GCNGC	5 cut(s)	69, 141, 433, 436, 705
BmcAI	AGTACT	1 cut(s)	201
BmiI	GGNNCC	4 cut(s)	42, 338, 449, 492
BmsI	GCATC	2 cut(s)	76, 370
BpiI	GAAGAC	1 cut(s)	777
Bpu10I	CCTNAGC	1 cut(s)	495
BpuEI	CTTGAG	2 cut(s)	205, 741
BsaHI	GRCGYC	1 cut(s)	476
BsaI	GGTCTC	1 cut(s)	735
BsaJI	CCNNGG	3 cut(s)	654, 696, 707
Bse1I	ACTGG	2 cut(s)	197, 634
Bse21I	CCTNAGG	1 cut(s)	341
BseDI	CCNNGG	3 cut(s)	654, 696, 707
BseGI	GGATG	1 cut(s)	552
BseMII	CTCAG	5 cut(s)	332, 471, 486, 720, 751
BseNI	ACTGG	2 cut(s)	197, 634
BseRI	GAGGAG	1 cut(s)	521
BseXI	GCAGC	4 cut(s)	151, 443, 446, 715
Bsh1236I	CGCG	1 cut(s)	67
BshFI	GGCC	1 cut(s)	640
BshNI	GGYRCC	1 cut(s)	490
BslFI	GGGAC	1 cut(s)	487
BsmAI	GTCTC	1 cut(s)	735
BsmFI	GGGAC	1 cut(s)	487
BsmI	GAATGC	2 cut(s)	128, 596
BsnI	GGCC	1 cut(s)	640
Bso31I	GGTCTC	1 cut(s)	735
Bsp1407I	TGTACA	1 cut(s)	120
Bsp143I	GATC	8 cut(s)	13, 28, 58, 133, 193, 411, 418, 664
BspACI	CCGC	1 cut(s)	67
BspANI	GGCC	1 cut(s)	640
BspCNI	CTCAG	5 cut(s)	333, 472, 487, 721, 750
BspFNI	CGCG	1 cut(s)	67
BspLI	GGNNCC	4 cut(s)	42, 338, 449, 492
BspMI	ACCTGC	1 cut(s)	394
BspPI	GGATC	5 cut(s)	8, 23, 53, 188, 659
BspT107I	GGYRCC	1 cut(s)	490
BspTNI	GGTCTC	1 cut(s)	735
BsrGI	TGTACA	1 cut(s)	120
BsrI	ACTGG	2 cut(s)	197, 634
BssECI	CCNNGG	3 cut(s)	654, 696, 707
BssMI	GATC	8 cut(s)	13, 28, 58, 133, 193, 411, 418, 664
BssNI	GRCGYC	1 cut(s)	476
BssT1I	CCWWGG	2 cut(s)	654, 696
Bst4CI	ACNGT	2 cut(s)	275, 587
BstACI	GRCGYC	1 cut(s)	476
BstAUI	TGTACA	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	293
BstDEI	CTNAG	5 cut(s)	341, 480, 495, 729, 737
BstEII	GGTNACC	1 cut(s)	658
BstF5I	GGATG	1 cut(s)	552
BstFNI	CGCG	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	8 cut(s)	16, 31, 61, 136, 196, 414, 421, 667
BstMAI	GTCTC	1 cut(s)	735
BstMBI	GATC	8 cut(s)	13, 28, 58, 133, 193, 411, 418, 664
BstPI	GGTNACC	1 cut(s)	658
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	4 cut(s)	151, 443, 446, 715
BstV2I	GAAGAC	1 cut(s)	777
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
Bsu36I	CCTNAGG	1 cut(s)	341
BsuRI	GGCC	1 cut(s)	640
BtsCI	GGATG	1 cut(s)	552
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	3 cut(s)	280, 444, 592
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	1 cut(s)	293
CaiI	CAGNNNCTG	1 cut(s)	728
CfoI	GCGC	1 cut(s)	297
CseI	GACGC	1 cut(s)	484
Csp6I	GTAC	2 cut(s)	121, 200
CviAII	CATG	2 cut(s)	159, 487
CviQI	GTAC	2 cut(s)	121, 200
DdeI	CTNAG	5 cut(s)	341, 480, 495, 729, 737
DpnI	GATC	8 cut(s)	15, 30, 60, 135, 195, 413, 420, 666
DpnII	GATC	8 cut(s)	13, 28, 58, 133, 193, 411, 418, 664
Eco130I	CCWWGG	2 cut(s)	654, 696
Eco147I	AGGCCT	1 cut(s)	640
Eco31I	GGTCTC	1 cut(s)	735
Eco57I	CTGAAG	1 cut(s)	705
Eco81I	CCTNAGG	1 cut(s)	341
Eco91I	GGTNACC	1 cut(s)	658
EcoO65I	GGTNACC	1 cut(s)	658
EcoT14I	CCWWGG	2 cut(s)	654, 696
ErhI	CCWWGG	2 cut(s)	654, 696
FaeI	CATG	2 cut(s)	162, 490
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	2 cut(s)	158, 486
Fnu4HI	GCNGC	5 cut(s)	68, 140, 432, 435, 704
FokI	GGATG	1 cut(s)	559
Fsp4HI	GCNGC	5 cut(s)	68, 140, 432, 435, 704
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	5 cut(s)	68, 140, 432, 435, 704
HaeIII	GGCC	1 cut(s)	640
HgaI	GACGC	1 cut(s)	484
HhaI	GCGC	1 cut(s)	297
Hin1I	GRCGYC	1 cut(s)	476
Hin1II	CATG	2 cut(s)	162, 490
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	381
HinfI	GANTC	4 cut(s)	35, 208, 596, 644
HphI	GGTGA	4 cut(s)	418, 428, 670, 685
Hpy166II	GTNNAC	2 cut(s)	121, 529
Hpy188I	TCNGA	3 cut(s)	40, 730, 740
Hpy188III	TCNNGA	4 cut(s)	32, 76, 668, 688
Hpy8I	GTNNAC	2 cut(s)	121, 529
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	4 cut(s)	277, 670, 729, 757
HpyCH4III	ACNGT	2 cut(s)	275, 587
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	2 cut(s)	327, 431
HpyF3I	CTNAG	5 cut(s)	341, 480, 495, 729, 737
HpySE526I	ACGT	1 cut(s)	302
Hsp92I	GRCGYC	1 cut(s)	476
Hsp92II	CATG	2 cut(s)	162, 490
HspAI	GCGC	1 cut(s)	295
Kzo9I	GATC	8 cut(s)	13, 28, 58, 133, 193, 411, 418, 664
LmnI	GCTCC	1 cut(s)	447
Lsp1109I	GCAGC	4 cut(s)	151, 443, 446, 715
LweI	GCATC	2 cut(s)	76, 370
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	5 cut(s)	146, 269, 313, 622, 658
MalI	GATC	8 cut(s)	15, 30, 60, 135, 195, 413, 420, 666
MboI	GATC	8 cut(s)	13, 28, 58, 133, 193, 411, 418, 664
MboII	GAAGA	5 cut(s)	190, 367, 400, 421, 782
MflI	RGATCY	1 cut(s)	13
MlyI	GAGTC	2 cut(s)	29, 590
MmeI	TCCRAC	1 cut(s)	86
MseI	TTAA	2 cut(s)	228, 782
MslI	CAYNNNNRTG	1 cut(s)	366
Mva1269I	GAATGC	2 cut(s)	128, 596
MvnI	CGCG	1 cut(s)	67
NdeII	GATC	8 cut(s)	13, 28, 58, 133, 193, 411, 418, 664
NlaIII	CATG	2 cut(s)	162, 490
NlaIV	GGNNCC	4 cut(s)	42, 338, 449, 492
NmeAIII	GCCGAG	1 cut(s)	732
NmuCI	GTSAC	2 cut(s)	622, 658
PaqCI	CACCTGC	1 cut(s)	394
PceI	AGGCCT	1 cut(s)	640
PctI	GAATGC	2 cut(s)	128, 596
PfeI	GAWTC	2 cut(s)	208, 644
PkrI	GCNGC	5 cut(s)	69, 141, 433, 436, 705
PleI	GAGTC	2 cut(s)	29, 590
PpsI	GAGTC	2 cut(s)	29, 590
PspEI	GGTNACC	1 cut(s)	658
PspN4I	GGNNCC	4 cut(s)	42, 338, 449, 492
PstNI	CAGNNNCTG	1 cut(s)	728
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	2 cut(s)	122, 201
RsaNI	GTAC	2 cut(s)	121, 200
RseI	CAYNNNNRTG	1 cut(s)	366
SaqAI	TTAA	2 cut(s)	228, 782
SatI	GCNGC	5 cut(s)	68, 140, 432, 435, 704
Sau3AI	GATC	8 cut(s)	13, 28, 58, 133, 193, 411, 418, 664
ScaI	AGTACT	1 cut(s)	201
SchI	GAGTC	2 cut(s)	29, 590
SfaNI	GCATC	2 cut(s)	76, 370
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	2 cut(s)	184, 756
SmoI	CTYRAG	2 cut(s)	184, 756
SseBI	AGGCCT	1 cut(s)	640
SsiI	CCGC	1 cut(s)	67
StuI	AGGCCT	1 cut(s)	640
StyI	CCWWGG	2 cut(s)	654, 696
TaaI	ACNGT	2 cut(s)	275, 587
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	4 cut(s)	132, 264, 398, 687
TaqII	GACCGA	1 cut(s)	677
TatI	WGTACW	2 cut(s)	120, 199
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	2 cut(s)	208, 644
Tru1I	TTAA	2 cut(s)	228, 782
Tru9I	TTAA	2 cut(s)	228, 782
TscAI	CASTG	3 cut(s)	280, 444, 592
TseFI	GTSAC	2 cut(s)	622, 658
TseI	GCWGC	4 cut(s)	139, 431, 434, 703
Tsp45I	GTSAC	2 cut(s)	622, 658
TspDTI	ATGAA	1 cut(s)	475
TspRI	CASTG	3 cut(s)	280, 444, 592
ZrmI	AGTACT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.