Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001260

Physical Location & Seq

Genomic Coordinates Reverse (-)

32718648 .. 32719451

Gene Structure 804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG261300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCAGTCAAGGATCCTAATACTTTTGATCCAGATTCCGAACCATTTGTGGAGGTTGATCCAACCGGGCGTTTTGGAAGGTATGATGTTCTTCTTGGTAAGGGTGCTGTGAAGAAGGTGTACAGGGCATTTGATCAGCAGCAAGGTAACGAGGTGGCGTGGAATAAGGTGTGGTTAAAGAAATTGAGCGACGATCCAGTGCTATCGAATCATCTGGACGCAGAGGTTAAGCTATTGAGAGAGTTGGAGAACAAGTATATCATTGAATGTCACAGTGTTTGGAAGGATGTCAAGCGTAATGCTTTGAATTTCGTTACTGAGGTGTGCAATTCTGGGAACCTGAGGGATTATAGGAAGAAGCATCACCGTGTGAATACCAAGGCTTTGAAGAAGTGGTCAAAGCAGGTGCTTGAGGGATTGGAGTACCTCCATACACATGAGCCATGCATCATTCACAGAGATCTCAATTGCAGTAACATCTTCGTCAATGGGAATAATGGCCAGGTGAAGATCGGTGATCTGGGACTTGCAGCAACAGTGCGTGGGAGCCACAAAGCTCACACAGTTATAGGGACACCTGAGTTTATGGCACCTGAACTATACGAGGAGGATTACAATGAGATGGTGGACATATATTCGTTTGGGATGTGCTTGCTGGAGATGGCAACAAGGGAGATACCATACAGTGAATGTGAAACTGTTGTCAAGATTTACAGGGAGGTCTCAACTGGTATAAGGCCTGAATCCTTGTCCAAGGTGACCGATCCAGAGGTGAAGGCATTTATTGAGAAATCCCTAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

267

Amino Acids

30.49

Weight (kDa)

6.16

Isoelectric Point (pI)

30.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	31 - 240	3.6e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	31 - 254	7.2e-34	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55560
fragaria_vesca	FvH4_3g22150 FvH4_6g41240
malus_domestica	MD03G1189000.v1.1 MD09G1121400.v1.1 MD11G1205200.v1.1 MD17G1112400.v1.1
prunus_persica	Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.4G232100_v2.0.a1 Prupe.4G232100_v2.0.a1
pyrus_communis	pycom03g14190 pycom03g14210 pycom09g04580 pycom11g17800 pycom17g10410
rosa_chinensis	RchiOBHm_Chr2g0156791 RchiOBHm_Chr5g0038001 RchiOBHm_Chr5g0038041 RchiOBHm_Chr5g0042541
rosa_laevigata	RLG00000020942 RLG00000034135
rosa_multiflora	Rmu_co8331393.1_g000001 Rmu_co8390513.1_g000001 Rmu_sc0002670.1_g000011 Rmu_sc0008149.1_g000008 Rmu_sc0008278.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038120 Rroxscaffold_1G00042890 Rroxscaffold_2G00092720
rosa_rugosa	Rorug02G0456200 Rorug05G0170100 Rorug05G0201300 Rorug05G0201400
rosa_samantha	Rh2AG521800 Rh2BG535200 Rh2CG506700 Rh2DG544200 Rh5BG261300 Rh5BG261600 Rh5BG291700 Rh5CG293600 Rh5CG323900 Rh5DG270500 Rh5DG270600 Rh5DG301500
rosa_wichuraiana	Rw2G043080 Rw5G023930 Rw5G024110 Rw5G024140 Rw5G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	394
Acc36I	ACCTGC	1 cut(s)	394
AccB1I	GGYRCC	1 cut(s)	589
AclWI	GGATC	6 cut(s)	8, 21, 23, 53, 188, 758
AcoI	YGGCCR	1 cut(s)	499
AcsI	RAATTY	1 cut(s)	307
AdeI	CACNNNGTG	1 cut(s)	370
AfaI	GTAC	2 cut(s)	122, 425
AgsI	TTSAA	3 cut(s)	266, 307, 388
AjnI	CCWGG	1 cut(s)	501
AluBI	AGCT	2 cut(s)	232, 557
AluI	AGCT	2 cut(s)	232, 557
Alw26I	GTCTC	1 cut(s)	727
AlwI	GGATC	6 cut(s)	8, 21, 23, 53, 188, 758
AoxI	GGCC	2 cut(s)	499, 737
ApeKI	GCWGC	2 cut(s)	139, 530
ApoI	RAATTY	1 cut(s)	307
AspA2I	CCTAGG	1 cut(s)	796
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	5 cut(s)	356, 517, 527, 769, 784
AvrII	CCTAGG	1 cut(s)	796
AxyI	CCTNAGG	1 cut(s)	341
BalI	TGGCCA	1 cut(s)	501
BamHI	GGATCC	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	589
BarI	GAAGNNNNNNTAC	2 cut(s)	104, 136
BbvI	GCAGC	2 cut(s)	151, 542
BccI	CCATC	2 cut(s)	616, 655
BciT130I	CCWGG	1 cut(s)	503
BclI	TGATCA	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	727
BfaI	CTAG	1 cut(s)	797
BfuAI	ACCTGC	1 cut(s)	394
BglII	AGATCT	1 cut(s)	460
BisI	GCNGC	2 cut(s)	140, 531
BlnI	CCTAGG	1 cut(s)	796
BlsI	GCNGC	2 cut(s)	141, 532
Bme1390I	CCNGG	2 cut(s)	67, 503
BmiI	GGNNCC	4 cut(s)	15, 338, 548, 591
BmrFI	CCNGG	2 cut(s)	67, 503
BmsI	GCATC	2 cut(s)	370, 456
BpmI	CTGGAG	1 cut(s)	677
BpuEI	CTTGAG	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	67
BsaI	GGTCTC	1 cut(s)	727
BsaJI	CCNNGG	3 cut(s)	378, 753, 796
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bse1I	ACTGG	2 cut(s)	197, 733
Bse21I	CCTNAGG	1 cut(s)	341
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	3 cut(s)	378, 753, 796
BseGI	GGATG	2 cut(s)	292, 651
BseMII	CTCAG	3 cut(s)	309, 332, 570
BseNI	ACTGG	2 cut(s)	197, 733
BseRI	GAGGAG	1 cut(s)	620
BseXI	GCAGC	2 cut(s)	151, 542
BshFI	GGCC	2 cut(s)	501, 739
BshNI	GGYRCC	1 cut(s)	589
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	2 cut(s)	537, 586
BsmAI	GTCTC	1 cut(s)	727
BsmFI	GGGAC	2 cut(s)	537, 586
BsnI	GGCC	2 cut(s)	501, 739
Bso31I	GGTCTC	1 cut(s)	727
Bsp1407I	TGTACA	1 cut(s)	120
Bsp143I	GATC	9 cut(s)	13, 28, 58, 133, 193, 460, 510, 517, 763
BspANI	GGCC	2 cut(s)	501, 739
BspCNI	CTCAG	3 cut(s)	310, 333, 571
BspLI	GGNNCC	4 cut(s)	15, 338, 548, 591
BspMI	ACCTGC	1 cut(s)	394
BspPI	GGATC	6 cut(s)	8, 21, 23, 53, 188, 758
BspT107I	GGYRCC	1 cut(s)	589
BspTNI	GGTCTC	1 cut(s)	727
BsrGI	TGTACA	1 cut(s)	120
BsrI	ACTGG	2 cut(s)	197, 733
BssECI	CCNNGG	3 cut(s)	378, 753, 796
BssMI	GATC	9 cut(s)	13, 28, 58, 133, 193, 460, 510, 517, 763
BssT1I	CCWWGG	3 cut(s)	378, 753, 796
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	6 cut(s)	275, 368, 538, 565, 686, 700
BstAUI	TGTACA	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	653
BstDEI	CTNAG	3 cut(s)	318, 341, 579
BstEII	GGTNACC	1 cut(s)	757
BstF5I	GGATG	2 cut(s)	292, 651
BstKTI	GATC	9 cut(s)	16, 31, 61, 136, 196, 463, 513, 520, 766
BstMAI	GTCTC	1 cut(s)	727
BstMBI	GATC	9 cut(s)	13, 28, 58, 133, 193, 460, 510, 517, 763
BstNI	CCWGG	1 cut(s)	503
BstPI	GGTNACC	1 cut(s)	757
BstSCI	CCNGG	2 cut(s)	65, 501
BstV1I	GCAGC	2 cut(s)	151, 542
BstX2I	RGATCY	2 cut(s)	13, 460
BstYI	RGATCY	2 cut(s)	13, 460
Bsu36I	CCTNAGG	1 cut(s)	341
BsuRI	GGCC	2 cut(s)	501, 739
BtsCI	GGATG	2 cut(s)	292, 651
BtsIMutI	CAGTG	4 cut(s)	204, 280, 543, 691
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	1 cut(s)	653
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	121, 424
CviAII	CATG	2 cut(s)	437, 444
CviJI	RGCY	7 cut(s)	232, 383, 442, 501, 549, 557, 739
CviKI_1	RGCY	7 cut(s)	232, 383, 442, 501, 549, 557, 739
CviQI	GTAC	2 cut(s)	121, 424
DdeI	CTNAG	3 cut(s)	318, 341, 579
DpnI	GATC	9 cut(s)	15, 30, 60, 135, 195, 462, 512, 519, 765
DpnII	GATC	9 cut(s)	13, 28, 58, 133, 193, 460, 510, 517, 763
DraIII	CACNNNGTG	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	499
Eco130I	CCWWGG	3 cut(s)	378, 753, 796
Eco147I	AGGCCT	1 cut(s)	739
Eco31I	GGTCTC	1 cut(s)	727
Eco81I	CCTNAGG	1 cut(s)	341
Eco91I	GGTNACC	1 cut(s)	757
EcoO65I	GGTNACC	1 cut(s)	757
EcoRII	CCWGG	1 cut(s)	501
EcoT14I	CCWWGG	3 cut(s)	378, 753, 796
EcoT22I	ATGCAT	1 cut(s)	449
ErhI	CCWWGG	3 cut(s)	378, 753, 796
FaeI	CATG	2 cut(s)	440, 447
FaqI	GGGAC	2 cut(s)	537, 586
FatI	CATG	2 cut(s)	436, 443
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	140, 531
FokI	GGATG	2 cut(s)	299, 658
Fsp4HI	GCNGC	2 cut(s)	140, 531
FspBI	CTAG	1 cut(s)	797
GluI	GCNGC	2 cut(s)	140, 531
GsuI	CTGGAG	1 cut(s)	677
HaeIII	GGCC	2 cut(s)	501, 739
HapII	CCGG	1 cut(s)	66
HgaI	GACGC	1 cut(s)	227
Hin1II	CATG	2 cut(s)	440, 447
HinfI	GANTC	3 cut(s)	35, 208, 743
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	5 cut(s)	356, 517, 527, 769, 784
Hpy166II	GTNNAC	2 cut(s)	121, 628
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	4 cut(s)	32, 215, 706, 767
Hpy8I	GTNNAC	2 cut(s)	121, 628
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	4 cut(s)	72, 109, 277, 769
HpyCH4III	ACNGT	6 cut(s)	275, 368, 538, 565, 686, 700
HpyCH4V	TGCA	4 cut(s)	327, 447, 471, 530
HpyF3I	CTNAG	3 cut(s)	318, 341, 579
Hsp92II	CATG	2 cut(s)	440, 447
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	9 cut(s)	13, 28, 58, 133, 193, 460, 510, 517, 763
LmnI	GCTCC	1 cut(s)	546
Lsp1109I	GCAGC	2 cut(s)	151, 542
LweI	GCATC	2 cut(s)	370, 456
MaeI	CTAG	1 cut(s)	797
MaeIII	GTNAC	5 cut(s)	146, 269, 313, 473, 757
MalI	GATC	9 cut(s)	15, 30, 60, 135, 195, 462, 512, 519, 765
MboI	GATC	9 cut(s)	13, 28, 58, 133, 193, 460, 510, 517, 763
MboII	GAAGA	6 cut(s)	83, 124, 367, 400, 472, 520
MfeI	CAATTG	1 cut(s)	466
MflI	RGATCY	2 cut(s)	13, 460
MlsI	TGGCCA	1 cut(s)	501
MluCI	AATT	4 cut(s)	182, 307, 328, 466
MluNI	TGGCCA	1 cut(s)	501
MmeI	TCCRAC	2 cut(s)	86, 225
Mox20I	TGGCCA	1 cut(s)	501
Mph1103I	ATGCAT	1 cut(s)	449
MscI	TGGCCA	1 cut(s)	501
MseI	TTAA	2 cut(s)	176, 228
MslI	CAYNNNNRTG	2 cut(s)	366, 435
Msp20I	TGGCCA	1 cut(s)	501
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	2 cut(s)	67, 503
MunI	CAATTG	1 cut(s)	466
MvaI	CCWGG	1 cut(s)	503
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	9 cut(s)	13, 28, 58, 133, 193, 460, 510, 517, 763
NlaIII	CATG	2 cut(s)	440, 447
NlaIV	GGNNCC	4 cut(s)	15, 338, 548, 591
NmuCI	GTSAC	2 cut(s)	269, 757
NsiI	ATGCAT	1 cut(s)	449
PaqCI	CACCTGC	1 cut(s)	394
PceI	AGGCCT	1 cut(s)	739
PfeI	GAWTC	3 cut(s)	35, 208, 743
PkrI	GCNGC	2 cut(s)	141, 532
Psp6I	CCWGG	1 cut(s)	501
PspEI	GGTNACC	1 cut(s)	757
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	4 cut(s)	15, 338, 548, 591
PsuI	RGATCY	2 cut(s)	13, 460
RsaI	GTAC	2 cut(s)	122, 425
RsaNI	GTAC	2 cut(s)	121, 424
RseI	CAYNNNNRTG	2 cut(s)	366, 435
SaqAI	TTAA	2 cut(s)	176, 228
SatI	GCNGC	2 cut(s)	140, 531
Sau3AI	GATC	9 cut(s)	13, 28, 58, 133, 193, 460, 510, 517, 763
ScrFI	CCNGG	2 cut(s)	67, 503
SfaNI	GCATC	2 cut(s)	370, 456
SmiMI	CAYNNNNRTG	2 cut(s)	366, 435
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	4 cut(s)	182, 307, 328, 466
SseBI	AGGCCT	1 cut(s)	739
SspMI	CTAG	1 cut(s)	797
StuI	AGGCCT	1 cut(s)	739
StyD4I	CCNGG	2 cut(s)	65, 501
StyI	CCWWGG	3 cut(s)	378, 753, 796
TaaI	ACNGT	6 cut(s)	275, 368, 538, 565, 686, 700
TaqI	TCGA	1 cut(s)	206
TaqII	GACCGA	1 cut(s)	776
TasI	AATT	4 cut(s)	182, 307, 328, 466
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	3 cut(s)	35, 208, 743
Tru1I	TTAA	2 cut(s)	176, 228
Tru9I	TTAA	2 cut(s)	176, 228
TscAI	CASTG	4 cut(s)	204, 280, 543, 691
TseFI	GTSAC	2 cut(s)	269, 757
TseI	GCWGC	2 cut(s)	139, 530
Tsp45I	GTSAC	2 cut(s)	269, 757
TspRI	CASTG	4 cut(s)	204, 280, 543, 691
XapI	RAATTY	1 cut(s)	307
XmaJI	CCTAGG	1 cut(s)	796
XspI	CTAG	1 cut(s)	797
Zsp2I	ATGCAT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.