Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001260

Physical Location & Seq

Genomic Coordinates Forward (+)

32481721 .. 32484174

Gene Structure 2454 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g41240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCAGTGAAGGATACTAGTACTTTTGATCCAGAATCCGAGACGTATGTGGAGGTTGATCCGACTGGGCGGTTTGGGAGGTATGATGTGCTGCTTGGTCAGGGTGCTGTGAAGAAGGTCTATAGGGCGTTTGATCAGCAGCAAGGTACTGAGGTGGCGTGGAATAAGGTGCGGTTGAGGAACTTCAGTGATGATCCAATGCTGTTGAATCATCTTTACGCGGAGGTTAAGCTACTGAGCGAGTTGGAGAACAAGTACATTATTGAGTGTTACAGTGTTTGGAAGGATGTGGAGCGTCACGCTTTGAATTTTGTTACGGAGGTGTGCAATTCTGGGAATTTGAGGGACTACAGGAAGAAGCATAGGCGTGTGAATATTAAGGCTTTGAAGAAGTGGTCAAAGCAGGTGCTTGAGGGATTGGAGTACCTCCATACACATGAGCCGTGCATTATTCACAGAGATCTCAATTGCAGCAACATTTTTGTCAATGGGAATAACGGACAGGTGAAGCTCGGTGATCTGGGATTTGCAGCAATACTGGGGAGGAGCCATAAAGCACATACTGTTCTAGGGACACCCGAGTTTATGGCACCTGAGCTCTACGAGGAGGATTACAATGAGATGGTGGACATATACTCGTTTGGGATGTGCTTGCTGGAGATGGTAACAAGGGAGATACCATACGGTGAATGCGACTCTGTTGTCAAGATATACAGGAAGGTCTCAGCTGGTATAAGGCCTGACTCCCTAGCCAAGGTGGCTGATCCAGAGGTGAAGGCATTTATAGAGAAATCCTTAGGCCAGCCAAGGGCAAGACCTTCAGCCTCTGAGCTACTGAGAGACCCCTTCTTTTCTGAAGTTGTCGCTGAAGAGCCTGATCCAACCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

297

Amino Acids

33.77

Weight (kDa)

5.7

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	31 - 284	7.1e-51	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	31 - 280	1.2e-32	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55560
fragaria_vesca	FvH4_3g22150 FvH4_6g41240
malus_domestica	MD03G1189000.v1.1 MD09G1121400.v1.1 MD11G1205200.v1.1 MD17G1112400.v1.1
prunus_persica	Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.4G232100_v2.0.a1 Prupe.4G232100_v2.0.a1
pyrus_communis	pycom03g14190 pycom03g14210 pycom09g04580 pycom11g17800 pycom17g10410
rosa_chinensis	RchiOBHm_Chr2g0156791 RchiOBHm_Chr5g0038001 RchiOBHm_Chr5g0038041 RchiOBHm_Chr5g0042541
rosa_laevigata	RLG00000020942 RLG00000034135
rosa_multiflora	Rmu_co8331393.1_g000001 Rmu_co8390513.1_g000001 Rmu_sc0002670.1_g000011 Rmu_sc0008149.1_g000008 Rmu_sc0008278.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038120 Rroxscaffold_1G00042890 Rroxscaffold_2G00092720
rosa_rugosa	Rorug02G0456200 Rorug05G0170100 Rorug05G0201300 Rorug05G0201400
rosa_samantha	Rh2AG521800 Rh2BG535200 Rh2CG506700 Rh2DG544200 Rh5BG261300 Rh5BG261600 Rh5BG291700 Rh5CG293600 Rh5CG323900 Rh5DG270500 Rh5DG270600 Rh5DG301500
rosa_wichuraiana	Rw2G043080 Rw5G023930 Rw5G024110 Rw5G024140 Rw5G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	394
AasI	GACNNNNNNGTC	1 cut(s)	701
Acc36I	ACCTGC	1 cut(s)	394
AccB1I	GGYRCC	1 cut(s)	589
AccII	CGCG	1 cut(s)	221
AciI	CCGC	3 cut(s)	70, 172, 221
AclWI	GGATC	5 cut(s)	23, 53, 188, 758, 872
AcsI	RAATTY	2 cut(s)	307, 337
AcuI	CTGAAG	4 cut(s)	169, 804, 876, 888
AfaI	GTAC	4 cut(s)	22, 148, 257, 425
AfiI	CCNNNNNNNGG	2 cut(s)	754, 808
AgsI	TTSAA	3 cut(s)	208, 307, 388
AhlI	ACTAGT	1 cut(s)	17
AluBI	AGCT	5 cut(s)	232, 511, 598, 728, 832
AluI	AGCT	5 cut(s)	232, 511, 598, 728, 832
Alw21I	GWGCWC	1 cut(s)	600
Alw26I	GTCTC	3 cut(s)	35, 727, 834
AlwI	GGATC	5 cut(s)	23, 53, 188, 758, 872
AlwNI	CAGNNNCTG	1 cut(s)	827
Ama87I	CYCGRG	1 cut(s)	578
AoxI	GGCC	2 cut(s)	737, 799
ApeKI	GCWGC	4 cut(s)	91, 139, 471, 530
ApoI	RAATTY	2 cut(s)	307, 337
AsuHPI	GGTGA	4 cut(s)	517, 527, 698, 784
AvaI	CYCGRG	1 cut(s)	578
AxyI	CCTNAGG	1 cut(s)	796
BaeI	ACNNNNGTAYC	2 cut(s)	138, 171
BanI	GGYRCC	1 cut(s)	589
BanII	GRGCYC	1 cut(s)	600
Bbv12I	GWGCWC	1 cut(s)	600
BbvI	GCAGC	4 cut(s)	78, 151, 483, 542
BccI	CCATC	2 cut(s)	616, 655
BceAI	ACGGC	1 cut(s)	427
BciVI	GTATCC	1 cut(s)	7
BclI	TGATCA	1 cut(s)	133
BcoDI	GTCTC	3 cut(s)	35, 727, 834
BcuI	ACTAGT	1 cut(s)	17
BfaI	CTAG	3 cut(s)	18, 569, 749
BfmI	CTRYAG	2 cut(s)	121, 349
BfuAI	ACCTGC	1 cut(s)	394
BfuI	GTATCC	1 cut(s)	7
BglI	GCCNNNNNGGC	1 cut(s)	758
BglII	AGATCT	1 cut(s)	460
BisI	GCNGC	4 cut(s)	92, 140, 472, 531
BlsI	GCNGC	4 cut(s)	93, 141, 473, 532
BmcAI	AGTACT	1 cut(s)	22
BmeT110I	CYCGRG	1 cut(s)	578
BmiI	GGNNCC	2 cut(s)	548, 591
BmrI	ACTGGG	2 cut(s)	75, 548
BmuI	ACTGGG	2 cut(s)	75, 548
BpmI	CTGGAG	1 cut(s)	677
Bpu10I	CCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	431
BsaI	GGTCTC	2 cut(s)	727, 834
BsaJI	CCNNGG	2 cut(s)	753, 806
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	2 cut(s)	754, 808
Bse1I	ACTGG	2 cut(s)	70, 543
Bse21I	CCTNAGG	1 cut(s)	796
BseDI	CCNNGG	2 cut(s)	753, 806
BseGI	GGATG	2 cut(s)	292, 651
BseLI	CCNNNNNNNGG	2 cut(s)	754, 808
BseMII	CTCAG	6 cut(s)	141, 227, 585, 738, 819, 827
BseNI	ACTGG	2 cut(s)	70, 543
BseRI	GAGGAG	2 cut(s)	559, 620
BseXI	GCAGC	4 cut(s)	78, 151, 483, 542
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	2 cut(s)	739, 801
BshNI	GGYRCC	1 cut(s)	589
BsiHKAI	GWGCWC	1 cut(s)	600
BsiHKCI	CYCGRG	1 cut(s)	578
BslFI	GGGAC	2 cut(s)	359, 586
BslI	CCNNNNNNNGG	2 cut(s)	754, 808
BsmAI	GTCTC	3 cut(s)	35, 727, 834
BsmBI	CGTCTC	1 cut(s)	35
BsmFI	GGGAC	2 cut(s)	359, 586
BsmI	GAATGC	1 cut(s)	695
BsnI	GGCC	2 cut(s)	739, 801
Bso31I	GGTCTC	2 cut(s)	727, 834
BsoBI	CYCGRG	1 cut(s)	578
Bsp1286I	GDGCHC	1 cut(s)	600
Bsp143I	GATC	8 cut(s)	28, 58, 133, 193, 460, 517, 763, 877
BspACI	CCGC	3 cut(s)	70, 172, 221
BspANI	GGCC	2 cut(s)	739, 801
BspCNI	CTCAG	6 cut(s)	142, 228, 586, 737, 820, 828
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	2 cut(s)	548, 591
BspMI	ACCTGC	1 cut(s)	394
BspPI	GGATC	5 cut(s)	23, 53, 188, 758, 872
BspQI	GCTCTTC	1 cut(s)	864
BspT107I	GGYRCC	1 cut(s)	589
BspTNI	GGTCTC	2 cut(s)	727, 834
BsrI	ACTGG	2 cut(s)	70, 543
BssECI	CCNNGG	2 cut(s)	753, 806
BssMI	GATC	8 cut(s)	28, 58, 133, 193, 460, 517, 763, 877
BssT1I	CCWWGG	2 cut(s)	753, 806
Bst4CI	ACNGT	3 cut(s)	275, 565, 686
Bst6I	CTCTTC	1 cut(s)	864
BstC8I	GCNNGC	2 cut(s)	653, 803
BstDEI	CTNAG	7 cut(s)	150, 236, 594, 724, 796, 828, 836
BstENI	CCTNNNNNAGG	1 cut(s)	752
BstF5I	GGATG	2 cut(s)	292, 651
BstFNI	CGCG	1 cut(s)	221
BstKTI	GATC	8 cut(s)	31, 61, 136, 196, 463, 520, 766, 880
BstMAI	GTCTC	3 cut(s)	35, 727, 834
BstMBI	GATC	8 cut(s)	28, 58, 133, 193, 460, 517, 763, 877
BstMWI	GCNNNNNNNGC	1 cut(s)	758
BstSFI	CTRYAG	2 cut(s)	121, 349
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	4 cut(s)	78, 151, 483, 542
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
Bsu36I	CCTNAGG	1 cut(s)	796
BsuI	GTATCC	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	739, 801
BtsCI	GGATG	2 cut(s)	292, 651
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	3 cut(s)	12, 193, 280
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	2 cut(s)	653, 803
CaiI	CAGNNNCTG	1 cut(s)	827
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	4 cut(s)	21, 147, 256, 424
CviAII	CATG	1 cut(s)	437
CviQI	GTAC	4 cut(s)	21, 147, 256, 424
DdeI	CTNAG	7 cut(s)	150, 236, 594, 724, 796, 828, 836
DpnI	GATC	8 cut(s)	30, 60, 135, 195, 462, 519, 765, 879
DpnII	GATC	8 cut(s)	28, 58, 133, 193, 460, 517, 763, 877
DrdI	GACNNNNNNGTC	1 cut(s)	701
DseDI	GACNNNNNNGTC	1 cut(s)	701
Eam1104I	CTCTTC	1 cut(s)	864
EarI	CTCTTC	1 cut(s)	864
Ecl136II	GAGCTC	1 cut(s)	598
Eco130I	CCWWGG	2 cut(s)	753, 806
Eco147I	AGGCCT	1 cut(s)	739
Eco24I	GRGCYC	1 cut(s)	600
Eco31I	GGTCTC	2 cut(s)	727, 834
Eco53kI	GAGCTC	1 cut(s)	598
Eco57I	CTGAAG	4 cut(s)	169, 804, 876, 888
Eco81I	CCTNAGG	1 cut(s)	796
Eco88I	CYCGRG	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	598
EcoNI	CCTNNNNNAGG	1 cut(s)	752
EcoT14I	CCWWGG	2 cut(s)	753, 806
EcoT38I	GRGCYC	1 cut(s)	600
ErhI	CCWWGG	2 cut(s)	753, 806
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	1 cut(s)	440
FaqI	GGGAC	2 cut(s)	359, 586
FatI	CATG	1 cut(s)	436
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	4 cut(s)	92, 140, 472, 531
FokI	GGATG	2 cut(s)	299, 658
FriOI	GRGCYC	1 cut(s)	600
Fsp4HI	GCNGC	4 cut(s)	92, 140, 472, 531
FspBI	CTAG	3 cut(s)	18, 569, 749
GluI	GCNGC	4 cut(s)	92, 140, 472, 531
GsuI	CTGGAG	1 cut(s)	677
HaeIII	GGCC	2 cut(s)	739, 801
HgaI	GACGC	1 cut(s)	284
Hin1II	CATG	1 cut(s)	440
HinfI	GANTC	4 cut(s)	35, 208, 695, 743
HphI	GGTGA	4 cut(s)	517, 527, 698, 784
Hpy166II	GTNNAC	1 cut(s)	628
Hpy188I	TCNGA	4 cut(s)	40, 63, 829, 856
Hpy188III	TCNNGA	4 cut(s)	32, 706, 767, 888
Hpy8I	GTNNAC	1 cut(s)	628
HpyAV	CCTTC	7 cut(s)	4, 109, 277, 712, 769, 828, 856
HpyCH4III	ACNGT	3 cut(s)	275, 565, 686
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	4 cut(s)	327, 447, 471, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	758
HpyF3I	CTNAG	7 cut(s)	150, 236, 594, 724, 796, 828, 836
HpySE526I	ACGT	1 cut(s)	44
Hsp92II	CATG	1 cut(s)	440
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	8 cut(s)	28, 58, 133, 193, 460, 517, 763, 877
LguI	GCTCTTC	1 cut(s)	864
LmnI	GCTCC	2 cut(s)	292, 546
Lsp1109I	GCAGC	4 cut(s)	78, 151, 483, 542
MaeI	CTAG	3 cut(s)	18, 569, 749
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	4 cut(s)	269, 296, 313, 664
MalI	GATC	8 cut(s)	30, 60, 135, 195, 462, 519, 765, 879
MboI	GATC	8 cut(s)	28, 58, 133, 193, 460, 517, 763, 877
MboII	GAAGA	4 cut(s)	124, 367, 400, 881
MfeI	CAATTG	1 cut(s)	466
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	1 cut(s)	600
MluCI	AATT	4 cut(s)	307, 328, 337, 466
MlyI	GAGTC	2 cut(s)	689, 737
MmeI	TCCRAC	2 cut(s)	86, 225
MseI	TTAA	2 cut(s)	228, 378
MslI	CAYNNNNRTG	2 cut(s)	366, 435
MspA1I	CMGCKG	1 cut(s)	728
MunI	CAATTG	1 cut(s)	466
Mva1269I	GAATGC	1 cut(s)	695
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	758
NdeII	GATC	8 cut(s)	28, 58, 133, 193, 460, 517, 763, 877
NlaIII	CATG	1 cut(s)	440
NlaIV	GGNNCC	2 cut(s)	548, 591
NmuCI	GTSAC	1 cut(s)	296
PaqCI	CACCTGC	1 cut(s)	394
PceI	AGGCCT	1 cut(s)	739
PciSI	GCTCTTC	1 cut(s)	864
PcsI	WCGNNNNNNNCGW	1 cut(s)	690
PctI	GAATGC	1 cut(s)	695
PfeI	GAWTC	2 cut(s)	35, 208
PkrI	GCNGC	4 cut(s)	93, 141, 473, 532
PleI	GAGTC	2 cut(s)	689, 737
PpsI	GAGTC	2 cut(s)	689, 737
Psp124BI	GAGCTC	1 cut(s)	600
PspN4I	GGNNCC	2 cut(s)	548, 591
PstNI	CAGNNNCTG	1 cut(s)	827
PsuI	RGATCY	1 cut(s)	460
PvuII	CAGCTG	1 cut(s)	728
RsaI	GTAC	4 cut(s)	22, 148, 257, 425
RsaNI	GTAC	4 cut(s)	21, 147, 256, 424
RseI	CAYNNNNRTG	2 cut(s)	366, 435
SacI	GAGCTC	1 cut(s)	600
SapI	GCTCTTC	1 cut(s)	864
SaqAI	TTAA	2 cut(s)	228, 378
SatI	GCNGC	4 cut(s)	92, 140, 472, 531
Sau3AI	GATC	8 cut(s)	28, 58, 133, 193, 460, 517, 763, 877
ScaI	AGTACT	1 cut(s)	22
SchI	GAGTC	2 cut(s)	689, 737
SduI	GDGCHC	1 cut(s)	600
SfcI	CTRYAG	2 cut(s)	121, 349
SmiMI	CAYNNNNRTG	2 cut(s)	366, 435
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
SpeI	ACTAGT	1 cut(s)	17
Sse9I	AATT	4 cut(s)	307, 328, 337, 466
SseBI	AGGCCT	1 cut(s)	739
SsiI	CCGC	3 cut(s)	70, 172, 221
SspI	AATATT	1 cut(s)	376
SspMI	CTAG	3 cut(s)	18, 569, 749
SstI	GAGCTC	1 cut(s)	600
StuI	AGGCCT	1 cut(s)	739
StyI	CCWWGG	2 cut(s)	753, 806
TaaI	ACNGT	3 cut(s)	275, 565, 686
TaiI	ACGT	1 cut(s)	47
TasI	AATT	4 cut(s)	307, 328, 337, 466
TatI	WGTACW	2 cut(s)	20, 255
TfiI	GAWTC	2 cut(s)	35, 208
Tru1I	TTAA	2 cut(s)	228, 378
Tru9I	TTAA	2 cut(s)	228, 378
TscAI	CASTG	3 cut(s)	12, 193, 280
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	4 cut(s)	91, 139, 471, 530
Tsp45I	GTSAC	1 cut(s)	296
TspGWI	ACGGA	2 cut(s)	332, 513
TspRI	CASTG	3 cut(s)	12, 193, 280
XagI	CCTNNNNNAGG	1 cut(s)	752
XapI	RAATTY	2 cut(s)	307, 337
XspI	CTAG	3 cut(s)	18, 569, 749
ZrmI	AGTACT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.