Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001260

Physical Location & Seq

Genomic Coordinates Reverse (-)

58584623 .. 58587950

Gene Structure 3328 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0456200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2079 bp

ATGAACACATTGGGCATTTTCACAAACATTTCTCGAATCACTAATATTCATGATCATGGAAGAGTTGTTGATAGTAAAAAGGGTAGATTTCAATGCAACTACTGTGATAAAGAGGTGAGCGGTATCACCCGTTTGAAGTGCCATTTAGGAGGAGTAGGGCCGGAAGTAAAACCATGTTTAAAGGTTCCTGTTGAGGTGAAGGAGCTGTGGAGAAACAAGTTGCTAGAAAGTCGCGGCAAGAAAGTTAACCACTCTTCCAGCTCAAATGGTGTTAAGCGTAAGAGGCGTGAGACTTCTCAAACTTCTAGTTATCAGGATGGAAGCGAAGAAGATACAGACTCTATGTCAGAAGAAAATGCAACAGATCATGTCAGCAGTACCAATGGAAATATAGGCATTCAAAAAGGAGAAAGTAATGACATGAGAAATGTTTTGATATCAATGAACCCCGAAAGATGCATTGGTAGGTTCTTTTATGAAACAGGCTTAGAATTTACTGCTGCAAATTCTCCTAGCTTTAAAAGAATGATAAATTCTGTTGCTGGTCCTGGTGTGAATTACAAGATTCCTAGCTGTGAAGAGCTTAAAGGTTGCATCTTTCAAGATGAAGTGAAGGAGATGCAAGAATATGTGAGAGAGATTAAGGAATCCTGGGCTACTACTGGATGTAGCATCTTGTTGGACAGTTGGATTAATGAAAAGGGTAGAAACCTCGTTAACTTTTTGGTCAACTGCCCTCAAGGCCCTGTTTATCTCTGTACTCATGATGTTTCATCTTTCATTGGTAATGTCGATGCCACACGTGCACTATTGGAGGGGATTATTAAGGATGTTGGGGCTGACAATGTTGTTCAGATTGTGGCAGATTCTACAACAGGTTGGGTTGGTGCTCTAGGCAAGGAGTTCAGTAAGCGCAAAGGAGTGTTTTGGGCAGTGAGTGGATCTCATTGCATTGAGCTGATGCTAGAGAAGATTGGAATGAGTACCTCCACTAAGGGGGTTTTGGATAAAGCGAAGACTATTACAAAGTTCATTCATGGGCATGAAGAAGTTTTGAAGATTTTGAAGAAACATACTTGTGGACGTGACCTGATTAAGCCCTCCAAGATAAGAGGAGCAATGCCCTTTATGACTTTAGATAGTATTGTATATGAAAAGCAGGAACTAAAAGACATGTTTGCCTCATCTGAGTGGAACATGTCAATCTGGGGTTCGAGAGTGGAGAGCAAGATGGTAGCAGATATAGTGGAGGATCAGTCCTTTTGGACTGGAGCTGAGATGGTCTCGAAAGCAACTATGCCACTGGTTCGTGCTATTGAATTGATCTTTGAGGCTGACAAGCCACTTGTGGGGCACATATATGAAACCATGGATCAAGTGAAGGAGAGAATTAAAGAAGAATTAATAAACAAAAAGTCCCAATACATGCCTTTTTGGGAAGTTATCGATGACATTTGGGATAATATTCTCCATATCCCTCTCCACGGGGCTGGTTATTATCTTAATCCAAGTCTCAAATACTCGAGTGACTTCTACTGTGATGATGAGGTTTACCTTGGGCTTATGTGCTGCATTGCACAGATGGTGCGAGATCCTTCAATTCAAGATGTAATACACAATCAACTCAAGGAGTACGTACGTGCTGAAGGCAGTTTCAAGGAGGGGAGTTCCTCTGGCCGAAGAATAACTCCTCCAGATATGTGGTGGTCTTCTTATGGGAAACAATGTCCTGAACTCCAGAGGTTTGCCATTAGAGTTTTGAGCCAGAACTGCGATGGTGCTTCAAGATATGGACTCAAAAGGACTCTAGCTGAGAAGCTGGTTACAGATAGAAGGAATCCTATTGAGCAGCAACGGTTGAGTGATCTGACTTTTCTTCATTATAATTTGCAATTACAGAAGTTTTGCTCAGGTGTGAAGAGTGGCATTGACGCTGAGGATATTCATCCAATGGATGACTGGATCATCGATGAAGCACCAGATATTGTTTCCCAGAATGGGGATGTGAAGGTGGAGCCTGCTAATGGAGCTACCAGTGAAGGATGTTCAAGATTTCATCTTAAAACAGAGTCCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

692

Amino Acids

77.94

Weight (kDa)

6.08

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF659	PF04937	190 - 341	2.7e-46	Domain of unknown function (DUF659)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55560
fragaria_vesca	FvH4_3g22150 FvH4_6g41240
malus_domestica	MD03G1189000.v1.1 MD09G1121400.v1.1 MD11G1205200.v1.1 MD17G1112400.v1.1
prunus_persica	Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.4G232100_v2.0.a1 Prupe.4G232100_v2.0.a1
pyrus_communis	pycom03g14190 pycom03g14210 pycom09g04580 pycom11g17800 pycom17g10410
rosa_chinensis	RchiOBHm_Chr2g0156791 RchiOBHm_Chr5g0038001 RchiOBHm_Chr5g0038041 RchiOBHm_Chr5g0042541
rosa_laevigata	RLG00000020942 RLG00000034135
rosa_multiflora	Rmu_co8331393.1_g000001 Rmu_co8390513.1_g000001 Rmu_sc0002670.1_g000011 Rmu_sc0008149.1_g000008 Rmu_sc0008278.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038120 Rroxscaffold_1G00042890 Rroxscaffold_2G00092720
rosa_rugosa	Rorug02G0456200 Rorug05G0170100 Rorug05G0201300 Rorug05G0201400
rosa_samantha	Rh2AG521800 Rh2BG535200 Rh2CG506700 Rh2DG544200 Rh5BG261300 Rh5BG261600 Rh5BG291700 Rh5CG293600 Rh5CG323900 Rh5DG270500 Rh5DG270600 Rh5DG301500
rosa_wichuraiana	Rw2G043080 Rw5G023930 Rw5G024110 Rw5G024140 Rw5G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1884
AccBSI	CCGCTC	1 cut(s)	120
AccII	CGCG	1 cut(s)	234
AciI	CCGC	2 cut(s)	120, 234
AclWI	GGATC	5 cut(s)	949, 1260, 1380, 1586, 1970
AcoI	YGGCCR	1 cut(s)	1675
AcsI	RAATTY	3 cut(s)	491, 505, 532
AcuI	CTGAAG	1 cut(s)	1665
AcvI	CACGTG	1 cut(s)	803
AfaI	GTAC	5 cut(s)	379, 760, 985, 1634, 1638
AfiI	CCNNNNNNNGG	6 cut(s)	996, 1349, 1484, 1998, 1999, 2024
AflIII	ACRYGT	3 cut(s)	800, 1173, 1197
AhdI	GACNNNNNGTC	1 cut(s)	343
AjiI	CACGTC	1 cut(s)	1085
AjnI	CCWGG	2 cut(s)	547, 650
AjuI	GAANNNNNNNTTGG	2 cut(s)	444, 476
Alw21I	GWGCWC	2 cut(s)	808, 892
Alw26I	GTCTC	3 cut(s)	284, 1288, 1517
Alw44I	GTGCAC	1 cut(s)	804
AlwI	GGATC	5 cut(s)	949, 1260, 1380, 1586, 1970
Ama87I	CYCGRG	1 cut(s)	1522
AoxI	GGCC	3 cut(s)	158, 742, 1675
ApaLI	GTGCAC	1 cut(s)	804
ApeKI	GCWGC	3 cut(s)	500, 1569, 1849
ApoI	RAATTY	3 cut(s)	491, 505, 532
AseI	ATTAAT	2 cut(s)	693, 1403
AspLEI	GCGC	1 cut(s)	915
AspS9I	GGNCC	3 cut(s)	158, 545, 743
AsuHPI	GGTGA	3 cut(s)	118, 127, 208
AvaI	CYCGRG	1 cut(s)	1522
AvaII	GGWCC	1 cut(s)	545
BaeGI	GKGCMC	2 cut(s)	808, 1356
BbrPI	CACGTG	1 cut(s)	803
BbsI	GAAGAC	2 cut(s)	1022, 1701
Bbv12I	GWGCWC	2 cut(s)	808, 892
BbvCI	CCTCAGC	1 cut(s)	1935
BbvI	GCAGC	3 cut(s)	487, 1556, 1861
BccI	CCATC	5 cut(s)	311, 1225, 1273, 1576, 1769
BciT130I	CCWGG	2 cut(s)	549, 652
BclI	TGATCA	1 cut(s)	52
BcoDI	GTCTC	3 cut(s)	284, 1288, 1517
BfaI	CTAG	7 cut(s)	224, 306, 513, 570, 893, 965, 1808
BglI	GCCNNNNNGGC	1 cut(s)	741
BisI	GCNGC	4 cut(s)	235, 501, 1570, 1850
BlsI	GCNGC	4 cut(s)	236, 502, 1571, 1851
Bme1390I	CCNGG	2 cut(s)	549, 652
Bme18I	GGWCC	1 cut(s)	545
BmeRI	GACNNNNNGTC	1 cut(s)	343
BmeT110I	CYCGRG	1 cut(s)	1522
BmgBI	CACGTC	1 cut(s)	1085
BmgT120I	GGNCC	3 cut(s)	158, 545, 743
BmiI	GGNNCC	2 cut(s)	186, 2016
BmrFI	CCNGG	2 cut(s)	549, 652
BmsI	GCATC	6 cut(s)	446, 603, 609, 681, 784, 951
BpiI	GAAGAC	2 cut(s)	1022, 1701
BplI	GAGNNNNNCTC	4 cut(s)	928, 960, 1268, 1300
BpmI	CTGGAG	3 cut(s)	1290, 1677, 1721
Bpu10I	CCTNAGC	2 cut(s)	1909, 1935
BpuEI	CTTGAG	2 cut(s)	723, 1610
Bsa29I	ATCGAT	2 cut(s)	1446, 1968
BsaAI	YACGTR	3 cut(s)	803, 1636, 1640
BsaBI	GATNNNNATC	1 cut(s)	1944
BsaI	GGTCTC	1 cut(s)	1288
BsaJI	CCNNGG	4 cut(s)	651, 1368, 1483, 1555
BsaXI	ACNNNNNCTCC	2 cut(s)	1241, 1271
Bsc4I	CCNNNNNNNGG	6 cut(s)	996, 1349, 1484, 1998, 1999, 2024
Bse1I	ACTGG	5 cut(s)	667, 1273, 1308, 1964, 2034
Bse3DI	GCAATG	3 cut(s)	946, 1125, 1572
Bse8I	GATNNNNATC	1 cut(s)	1944
BseBI	CCWGG	2 cut(s)	549, 652
BseCI	ATCGAT	2 cut(s)	1446, 1968
BseDI	CCNNGG	4 cut(s)	651, 1368, 1483, 1555
BseGI	GGATG	7 cut(s)	322, 671, 835, 1945, 1960, 2008, 2048
BseJI	GATNNNNATC	1 cut(s)	1944
BseLI	CCNNNNNNNGG	6 cut(s)	996, 1349, 1484, 1998, 1999, 2024
BseMI	GCAATG	3 cut(s)	946, 1125, 1572
BseMII	CTCAG	5 cut(s)	1179, 1266, 1803, 1923, 1926
BseNI	ACTGG	5 cut(s)	667, 1273, 1308, 1964, 2034
BseRI	GAGGAG	3 cut(s)	165, 1128, 1680
BseSI	GKGCMC	2 cut(s)	808, 1356
BseXI	GCAGC	3 cut(s)	487, 1556, 1861
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	3 cut(s)	160, 744, 1677
BshVI	ATCGAT	2 cut(s)	1446, 1968
BsiHKAI	GWGCWC	2 cut(s)	808, 892
BsiHKCI	CYCGRG	1 cut(s)	1522
BsiSI	CCGG	1 cut(s)	161
BsiWI	CGTACG	1 cut(s)	1636
BslFI	GGGAC	1 cut(s)	1402
BslI	CCNNNNNNNGG	6 cut(s)	996, 1349, 1484, 1998, 1999, 2024
BsmAI	GTCTC	3 cut(s)	284, 1288, 1517
BsmFI	GGGAC	1 cut(s)	1402
BsmI	GAATGC	1 cut(s)	396
BsnI	GGCC	3 cut(s)	160, 744, 1677
Bso31I	GGTCTC	1 cut(s)	1288
BsoBI	CYCGRG	1 cut(s)	1522
Bsp1286I	GDGCHC	3 cut(s)	808, 892, 1356
Bsp143I	GATC	9 cut(s)	52, 364, 941, 1252, 1323, 1372, 1591, 1864, 1962
Bsp19I	CCATGG	1 cut(s)	1368
BspACI	CCGC	2 cut(s)	120, 234
BspANI	GGCC	3 cut(s)	160, 744, 1677
BspCNI	CTCAG	5 cut(s)	1180, 1267, 1804, 1922, 1927
BspDI	ATCGAT	2 cut(s)	1446, 1968
BspFNI	CGCG	1 cut(s)	234
BspHI	TCATGA	2 cut(s)	49, 763
BspLI	GGNNCC	2 cut(s)	186, 2016
BspPI	GGATC	5 cut(s)	949, 1260, 1380, 1586, 1970
BspQI	GCTCTTC	1 cut(s)	573
BspTNI	GGTCTC	1 cut(s)	1288
BsrBI	CCGCTC	1 cut(s)	120
BsrDI	GCAATG	3 cut(s)	946, 1125, 1572
BsrI	ACTGG	5 cut(s)	667, 1273, 1308, 1964, 2034
BssECI	CCNNGG	4 cut(s)	651, 1368, 1483, 1555
BssMI	GATC	9 cut(s)	52, 364, 941, 1252, 1323, 1372, 1591, 1864, 1962
BssT1I	CCWWGG	2 cut(s)	1368, 1555
Bst2UI	CCWGG	2 cut(s)	549, 652
Bst4CI	ACNGT	4 cut(s)	104, 686, 1538, 1857
Bst6I	CTCTTC	4 cut(s)	55, 259, 573, 1913
BstBAI	YACGTR	3 cut(s)	803, 1636, 1640
BstC8I	GCNNGC	1 cut(s)	2019
BstDEI	CTNAG	7 cut(s)	487, 993, 1188, 1275, 1812, 1909, 1935
BstDSI	CCRYGG	2 cut(s)	1368, 1483
BstF5I	GGATG	7 cut(s)	322, 671, 835, 1945, 1960, 2008, 2048
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	915
BstKTI	GATC	9 cut(s)	55, 367, 944, 1255, 1326, 1375, 1594, 1867, 1965
BstMAI	GTCTC	3 cut(s)	284, 1288, 1517
BstMBI	GATC	9 cut(s)	52, 364, 941, 1252, 1323, 1372, 1591, 1864, 1962
BstMWI	GCNNNNNNNGC	5 cut(s)	283, 741, 803, 1770, 2027
BstNI	CCWGG	2 cut(s)	549, 652
BstNSI	RCATGY	3 cut(s)	1177, 1201, 1429
BstSCI	CCNGG	2 cut(s)	547, 650
BstSLI	GKGCMC	2 cut(s)	808, 1356
BstSNI	TACGTA	1 cut(s)	1636
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	3 cut(s)	487, 1556, 1861
BstV2I	GAAGAC	2 cut(s)	1022, 1701
BstX2I	RGATCY	2 cut(s)	941, 1591
BstXI	CCANNNNNNTGG	2 cut(s)	1490, 1701
BstYI	RGATCY	2 cut(s)	941, 1591
Bsu15I	ATCGAT	2 cut(s)	1446, 1968
BsuRI	GGCC	3 cut(s)	160, 744, 1677
BsuTUI	ATCGAT	2 cut(s)	1446, 1968
BtgI	CCRYGG	2 cut(s)	1368, 1483
BtgZI	GCGATG	1 cut(s)	1788
BtrI	CACGTC	1 cut(s)	1085
BtsCI	GGATG	7 cut(s)	322, 671, 835, 1945, 1960, 2008, 2048
BtsI	GCAGTG	1 cut(s)	939
BtsIMutI	CAGTG	3 cut(s)	939, 1301, 2041
Cac8I	GCNNGC	1 cut(s)	2019
CciI	TCATGA	2 cut(s)	49, 763
CfoI	GCGC	1 cut(s)	915
Cfr13I	GGNCC	3 cut(s)	158, 545, 743
ClaI	ATCGAT	2 cut(s)	1446, 1968
CseI	GACGC	1 cut(s)	1940
Csp6I	GTAC	5 cut(s)	378, 759, 984, 1633, 1637
CviQI	GTAC	5 cut(s)	378, 759, 984, 1633, 1637
DdeI	CTNAG	7 cut(s)	487, 993, 1188, 1275, 1812, 1909, 1935
DpnI	GATC	9 cut(s)	54, 366, 943, 1254, 1325, 1374, 1593, 1866, 1964
DpnII	GATC	9 cut(s)	52, 364, 941, 1252, 1323, 1372, 1591, 1864, 1962
DraI	TTTAAA	2 cut(s)	180, 520
DriI	GACNNNNNGTC	1 cut(s)	343
EaeI	YGGCCR	1 cut(s)	1675
Eam1104I	CTCTTC	4 cut(s)	55, 259, 573, 1913
Eam1105I	GACNNNNNGTC	1 cut(s)	343
EarI	CTCTTC	4 cut(s)	55, 259, 573, 1913
Eco105I	TACGTA	1 cut(s)	1636
Eco130I	CCWWGG	2 cut(s)	1368, 1555
Eco31I	GGTCTC	1 cut(s)	1288
Eco32I	GATATC	1 cut(s)	438
Eco47I	GGWCC	1 cut(s)	545
Eco57I	CTGAAG	1 cut(s)	1665
Eco72I	CACGTG	1 cut(s)	803
Eco88I	CYCGRG	1 cut(s)	1522
EcoO109I	RGGNCCY	1 cut(s)	743
EcoRII	CCWGG	2 cut(s)	547, 650
EcoRV	GATATC	1 cut(s)	438
EcoT14I	CCWWGG	2 cut(s)	1368, 1555
EcoT22I	ATGCAT	1 cut(s)	461
ErhI	CCWWGG	2 cut(s)	1368, 1555
FaqI	GGGAC	1 cut(s)	1402
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	4 cut(s)	235, 501, 1570, 1850
FokI	GGATG	7 cut(s)	329, 678, 842, 1932, 1967, 2015, 2055
Fsp4HI	GCNGC	4 cut(s)	235, 501, 1570, 1850
FspBI	CTAG	7 cut(s)	224, 306, 513, 570, 893, 965, 1808
GlaI	GCGC	1 cut(s)	914
GluI	GCNGC	4 cut(s)	235, 501, 1570, 1850
GsuI	CTGGAG	3 cut(s)	1290, 1677, 1721
HaeIII	GGCC	3 cut(s)	160, 744, 1677
HapII	CCGG	1 cut(s)	161
HgaI	GACGC	1 cut(s)	1940
HhaI	GCGC	1 cut(s)	915
Hin6I	GCGC	1 cut(s)	913
HinP1I	GCGC	1 cut(s)	913
HincII	GTYRAC	3 cut(s)	247, 718, 730
HindII	GTYRAC	3 cut(s)	247, 718, 730
HinfI	GANTC	9 cut(s)	36, 338, 565, 647, 866, 1794, 1804, 1837, 2069
HpaI	GTTAAC	2 cut(s)	247, 718
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	3 cut(s)	118, 127, 208
Hpy166II	GTNNAC	6 cut(s)	247, 718, 730, 806, 1082, 1552
Hpy188I	TCNGA	4 cut(s)	349, 855, 1189, 1869
Hpy8I	GTNNAC	6 cut(s)	247, 718, 730, 806, 1082, 1552
HpyAV	CCTTC	8 cut(s)	193, 607, 1375, 1605, 1640, 1827, 2002, 2033
HpyCH4III	ACNGT	4 cut(s)	104, 686, 1538, 1857
HpyCH4IV	ACGT	4 cut(s)	802, 1084, 1635, 1639
HpyF10VI	GCNNNNNNNGC	5 cut(s)	283, 741, 803, 1770, 2027
HpyF3I	CTNAG	7 cut(s)	487, 993, 1188, 1275, 1812, 1909, 1935
HpySE526I	ACGT	4 cut(s)	802, 1084, 1635, 1639
HspAI	GCGC	1 cut(s)	913
Ksp22I	TGATCA	1 cut(s)	52
KspAI	GTTAAC	2 cut(s)	247, 718
Kzo9I	GATC	9 cut(s)	52, 364, 941, 1252, 1323, 1372, 1591, 1864, 1962
LguI	GCTCTTC	1 cut(s)	573
LmnI	GCTCC	5 cut(s)	202, 1115, 1271, 2014, 2027
Lsp1109I	GCAGC	3 cut(s)	487, 1556, 1861
LweI	GCATC	6 cut(s)	446, 603, 609, 681, 784, 951
MaeI	CTAG	7 cut(s)	224, 306, 513, 570, 893, 965, 1808
MaeII	ACGT	4 cut(s)	802, 1084, 1635, 1639
MaeIII	GTNAC	3 cut(s)	1085, 1526, 1822
MalI	GATC	9 cut(s)	54, 366, 943, 1254, 1325, 1374, 1593, 1866, 1964
MbiI	CCGCTC	1 cut(s)	120
MboI	GATC	9 cut(s)	52, 364, 941, 1252, 1323, 1372, 1591, 1864, 1962
MflI	RGATCY	2 cut(s)	941, 1591
MhlI	GDGCHC	3 cut(s)	808, 892, 1356
MlyI	GAGTC	4 cut(s)	332, 1788, 1798, 2078
MmeI	TCCRAC	2 cut(s)	660, 668
Mph1103I	ATGCAT	1 cut(s)	461
MslI	CAYNNNNRTG	5 cut(s)	54, 1041, 1077, 1189, 1359
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	2 cut(s)	549, 652
Mva1269I	GAATGC	1 cut(s)	396
MvaI	CCWGG	2 cut(s)	549, 652
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	5 cut(s)	283, 741, 803, 1770, 2027
NcoI	CCATGG	1 cut(s)	1368
NdeII	GATC	9 cut(s)	52, 364, 941, 1252, 1323, 1372, 1591, 1864, 1962
NlaIV	GGNNCC	2 cut(s)	186, 2016
NmuCI	GTSAC	2 cut(s)	1085, 1526
NsiI	ATGCAT	1 cut(s)	461
NspI	RCATGY	3 cut(s)	1177, 1201, 1429
PaeR7I	CTCGAG	1 cut(s)	1522
PagI	TCATGA	2 cut(s)	49, 763
PciI	ACATGT	2 cut(s)	1173, 1197
PciSI	GCTCTTC	1 cut(s)	573
PctI	GAATGC	1 cut(s)	396
PfeI	GAWTC	5 cut(s)	36, 565, 647, 866, 1837
Pfl23II	CGTACG	1 cut(s)	1636
PkrI	GCNGC	4 cut(s)	236, 502, 1571, 1851
PleI	GAGTC	4 cut(s)	332, 1788, 1798, 2077
PmaCI	CACGTG	1 cut(s)	803
PmlI	CACGTG	1 cut(s)	803
PpsI	GAGTC	4 cut(s)	332, 1788, 1798, 2077
Ppu21I	YACGTR	3 cut(s)	803, 1636, 1640
PscI	ACATGT	2 cut(s)	1173, 1197
PshBI	ATTAAT	2 cut(s)	693, 1403
PsiI	TTATAA	1 cut(s)	1884
Psp6I	CCWGG	2 cut(s)	547, 650
PspCI	CACGTG	1 cut(s)	803
PspGI	CCWGG	2 cut(s)	547, 650
PspLI	CGTACG	1 cut(s)	1636
PspN4I	GGNNCC	2 cut(s)	186, 2016
PspPI	GGNCC	3 cut(s)	158, 545, 743
PspXI	VCTCGAGB	1 cut(s)	1522
PsuI	RGATCY	2 cut(s)	941, 1591
RsaI	GTAC	5 cut(s)	379, 760, 985, 1634, 1638
RsaNI	GTAC	5 cut(s)	378, 759, 984, 1633, 1637
RseI	CAYNNNNRTG	5 cut(s)	54, 1041, 1077, 1189, 1359
SapI	GCTCTTC	1 cut(s)	573
SatI	GCNGC	4 cut(s)	235, 501, 1570, 1850
Sau3AI	GATC	9 cut(s)	52, 364, 941, 1252, 1323, 1372, 1591, 1864, 1962
Sau96I	GGNCC	3 cut(s)	158, 545, 743
SchI	GAGTC	4 cut(s)	332, 1788, 1798, 2078
ScrFI	CCNGG	2 cut(s)	549, 652
SduI	GDGCHC	3 cut(s)	808, 892, 1356
SfaNI	GCATC	6 cut(s)	446, 603, 609, 681, 784, 951
Sfr274I	CTCGAG	1 cut(s)	1522
SinI	GGWCC	1 cut(s)	545
SlaI	CTCGAG	1 cut(s)	1522
SmiMI	CAYNNNNRTG	5 cut(s)	54, 1041, 1077, 1189, 1359
SmlI	CTYRAG	3 cut(s)	738, 1522, 1625
SmoI	CTYRAG	3 cut(s)	738, 1522, 1625
SnaBI	TACGTA	1 cut(s)	1636
SsiI	CCGC	2 cut(s)	120, 234
SspI	AATATT	2 cut(s)	46, 1465
SspMI	CTAG	7 cut(s)	224, 306, 513, 570, 893, 965, 1808
StyD4I	CCNGG	2 cut(s)	547, 650
StyI	CCWWGG	2 cut(s)	1368, 1555
TaaI	ACNGT	4 cut(s)	104, 686, 1538, 1857
TaiI	ACGT	4 cut(s)	805, 1087, 1638, 1642
TaqI	TCGA	7 cut(s)	34, 792, 1214, 1286, 1446, 1523, 1968
TatI	WGTACW	1 cut(s)	758
TauI	GCSGC	1 cut(s)	237
TfiI	GAWTC	5 cut(s)	36, 565, 647, 866, 1837
TscAI	CASTG	3 cut(s)	939, 1308, 2041
TseFI	GTSAC	2 cut(s)	1085, 1526
TseI	GCWGC	3 cut(s)	500, 1569, 1849
Tsp45I	GTSAC	2 cut(s)	1085, 1526
TspRI	CASTG	3 cut(s)	939, 1308, 2041
VneI	GTGCAC	1 cut(s)	804
VpaK11BI	GGWCC	1 cut(s)	545
VspI	ATTAAT	2 cut(s)	693, 1403
XapI	RAATTY	3 cut(s)	491, 505, 532
XceI	RCATGY	3 cut(s)	1177, 1201, 1429
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1701, 1772, 1956
XhoI	CTCGAG	1 cut(s)	1522
XspI	CTAG	7 cut(s)	224, 306, 513, 570, 893, 965, 1808
Zsp2I	ATGCAT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.