Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001260

Physical Location & Seq

Genomic Coordinates Forward (+)

15507286 .. 15508664

Gene Structure 1379 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g14190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGATGCCGAGTGAAAACGAATATCAGTCCGACAAAGAACCATTCATAGAAATAGACCCAACGGGCCGCTACGGCCGGTACAACGAGCTCCTAGGTTGCGGGGCTGTGAAAAAGGTGTACCGGGCTTTCGATCAAGAGAAGGGCATAGAGGTAGCATGGAACCAAGTGAAGCTACGTAACTTTACCAACGATCCTGCTATGATCGAGAGGCTCTACTCCGAGGTTCGGCTTCTGAGGTCGTTGACGAACAAGAACATCATCACTTTGTACAACGTGTGGCGGGACGCCGAGCATAGCACTCTCAATTTTATTACTGAGGTTTGTACAAGCGGGAATTTGAGGGAGTACAGGAAGAAGCATAAGCATGTTTCGATGAAGGCCTTGAAGAAGTGGTCGAAACAGATCTTGGAAGGGTTGGAGTATTTGCATACACATGAACCTTGTGTTATTCATAGAGATCTCAATTGCAGCAATGTCTTTATCAATGGGAATGTTGGCCAGGTGAAGATTGGTGATTTGGGATTGGCTGCTATAGTGGGGAAGAACCATTCAGCGCATTCAGTGTTAGGGACTCCAGAATTTATGGCACCAGAGCTGTATGAAGAAGATTACACTGAGATGGTGGACATTTACTCATTTGGTATGTGTGTGCTTGAGATGGTGACCTTGGAAATACCCTATAGTGAATGTGACAATGTTGCAAAAATATACAAGAAGGTATCCTCAGGAGTAAGACCCCAGGCCTTGAACAAAATCAAAGACCCGGAGGTGAGAGCGTTTGTTGACAAGTGCCTCGCCCAGCCTAGAGCGAGACCTTCTGCCACTGAACTTCTCAAGGATGCGTTCTTTAATGCAATTGAAGATGACGATAATGATCAAGACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

296

Amino Acids

33.76

Weight (kDa)

5.7

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	28 - 283	3.7e-52	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	28 - 279	6.7e-38	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55560
fragaria_vesca	FvH4_3g22150 FvH4_6g41240
malus_domestica	MD03G1189000.v1.1 MD09G1121400.v1.1 MD11G1205200.v1.1 MD17G1112400.v1.1
prunus_persica	Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.4G232100_v2.0.a1 Prupe.4G232100_v2.0.a1
pyrus_communis	pycom03g14190 pycom03g14210 pycom09g04580 pycom11g17800 pycom17g10410
rosa_chinensis	RchiOBHm_Chr2g0156791 RchiOBHm_Chr5g0038001 RchiOBHm_Chr5g0038041 RchiOBHm_Chr5g0042541
rosa_laevigata	RLG00000020942 RLG00000034135
rosa_multiflora	Rmu_co8331393.1_g000001 Rmu_co8390513.1_g000001 Rmu_sc0002670.1_g000011 Rmu_sc0008149.1_g000008 Rmu_sc0008278.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038120 Rroxscaffold_1G00042890 Rroxscaffold_2G00092720
rosa_rugosa	Rorug02G0456200 Rorug05G0170100 Rorug05G0201300 Rorug05G0201400
rosa_samantha	Rh2AG521800 Rh2BG535200 Rh2CG506700 Rh2DG544200 Rh5BG261300 Rh5BG261600 Rh5BG291700 Rh5CG293600 Rh5CG323900 Rh5DG270500 Rh5DG270600 Rh5DG301500
rosa_wichuraiana	Rw2G043080 Rw5G023930 Rw5G024110 Rw5G024140 Rw5G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	586
AciI	CCGC	4 cut(s)	67, 99, 280, 330
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	2 cut(s)	73, 496
AcsI	RAATTY	2 cut(s)	334, 578
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	5 cut(s)	80, 119, 269, 325, 347
AfiI	CCNNNNNNNGG	1 cut(s)	225
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	3 cut(s)	385, 748, 860
AjnI	CCWGG	2 cut(s)	498, 738
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AluBI	AGCT	3 cut(s)	88, 172, 595
AluI	AGCT	3 cut(s)	88, 172, 595
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	805
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	5 cut(s)	64, 73, 378, 496, 741
ApeKI	GCWGC	2 cut(s)	468, 527
ApoI	RAATTY	2 cut(s)	334, 578
AspA2I	CCTAGG	1 cut(s)	91
AspLEI	GCGC	1 cut(s)	556
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	2 cut(s)	122, 764
AsuHPI	GGTGA	4 cut(s)	514, 524, 673, 781
AvrII	CCTAGG	1 cut(s)	91
AxyI	CCTNAGG	1 cut(s)	724
BalI	TGGCCA	1 cut(s)	498
BanI	GGYRCC	1 cut(s)	586
BanII	GRGCYC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	480, 514
BccI	CCATC	2 cut(s)	613, 652
BceAI	ACGGC	1 cut(s)	88
BciT130I	CCWGG	2 cut(s)	500, 740
BciVI	GTATCC	1 cut(s)	730
BclI	TGATCA	1 cut(s)	874
BcnI	CCSGG	2 cut(s)	122, 764
BcoDI	GTCTC	1 cut(s)	805
BfaI	CTAG	2 cut(s)	92, 804
BfmI	CTRYAG	2 cut(s)	531, 679
BfuI	GTATCC	1 cut(s)	730
BglI	GCCNNNNNGGC	1 cut(s)	72
BglII	AGATCT	2 cut(s)	402, 457
BisI	GCNGC	3 cut(s)	67, 469, 528
BlnI	CCTAGG	1 cut(s)	91
BlsI	GCNGC	3 cut(s)	68, 470, 529
Bme1390I	CCNGG	4 cut(s)	122, 500, 740, 764
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	161, 588
BmrFI	CCNGG	4 cut(s)	122, 500, 740, 764
BmsI	GCATC	1 cut(s)	829
BpmI	CTGGAG	1 cut(s)	558
BpuEI	CTTGAG	2 cut(s)	674, 818
BpuMI	CCSGG	2 cut(s)	122, 764
BsaAI	YACGTR	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	873
BsaHI	GRCGYC	1 cut(s)	285
BsaI	GGTCTC	1 cut(s)	805
BsaJI	CCNNGG	4 cut(s)	91, 219, 666, 738
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse118I	RCCGGY	1 cut(s)	75
Bse21I	CCTNAGG	1 cut(s)	724
Bse3DI	GCAATG	1 cut(s)	478
Bse8I	GATNNNNATC	1 cut(s)	873
BseBI	CCWGG	2 cut(s)	500, 740
BseDI	CCNNGG	4 cut(s)	91, 219, 666, 738
BseGI	GGATG	1 cut(s)	844
BseJI	GATNNNNATC	1 cut(s)	873
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMI	GCAATG	1 cut(s)	478
BseMII	CTCAG	4 cut(s)	224, 306, 606, 738
BseX3I	CGGCCG	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	480, 514
BseYI	CCCAGC	1 cut(s)	798
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	5 cut(s)	66, 75, 380, 498, 743
BshNI	GGYRCC	1 cut(s)	586
BsiEI	CGRYCG	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	3 cut(s)	76, 121, 764
BslFI	GGGAC	2 cut(s)	296, 583
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmAI	GTCTC	1 cut(s)	805
BsmFI	GGGAC	2 cut(s)	296, 583
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	5 cut(s)	66, 75, 380, 498, 743
Bso31I	GGTCTC	1 cut(s)	805
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp1407I	TGTACA	2 cut(s)	267, 323
Bsp143I	GATC	6 cut(s)	130, 190, 201, 402, 457, 874
BspACI	CCGC	4 cut(s)	67, 99, 280, 330
BspANI	GGCC	5 cut(s)	66, 75, 380, 498, 743
BspCNI	CTCAG	4 cut(s)	225, 307, 607, 737
BspLI	GGNNCC	2 cut(s)	161, 588
BspPI	GGATC	1 cut(s)	185
BspT107I	GGYRCC	1 cut(s)	586
BspTNI	GGTCTC	1 cut(s)	805
BsrDI	GCAATG	1 cut(s)	478
BsrFI	RCCGGY	1 cut(s)	75
BsrGI	TGTACA	2 cut(s)	267, 323
BssAI	RCCGGY	1 cut(s)	75
BssECI	CCNNGG	4 cut(s)	91, 219, 666, 738
BssMI	GATC	6 cut(s)	130, 190, 201, 402, 457, 874
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	2 cut(s)	91, 666
Bst2UI	CCWGG	2 cut(s)	500, 740
BstACI	GRCGYC	1 cut(s)	285
BstAUI	TGTACA	2 cut(s)	267, 323
BstBAI	YACGTR	1 cut(s)	176
BstDEI	CTNAG	4 cut(s)	233, 315, 615, 724
BstEII	GGTNACC	1 cut(s)	661
BstF5I	GGATG	1 cut(s)	844
BstHHI	GCGC	1 cut(s)	556
BstKTI	GATC	6 cut(s)	133, 193, 204, 405, 460, 877
BstMAI	GTCTC	1 cut(s)	805
BstMBI	GATC	6 cut(s)	130, 190, 201, 402, 457, 874
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstNI	CCWGG	2 cut(s)	500, 740
BstNSI	RCATGY	1 cut(s)	368
BstPI	GGTNACC	1 cut(s)	661
BstSCI	CCNGG	4 cut(s)	120, 498, 738, 762
BstSFI	CTRYAG	2 cut(s)	531, 679
BstSNI	TACGTA	1 cut(s)	176
BstV1I	GCAGC	2 cut(s)	480, 514
BstX2I	RGATCY	2 cut(s)	402, 457
BstYI	RGATCY	2 cut(s)	402, 457
BstZI	CGGCCG	1 cut(s)	73
Bsu36I	CCTNAGG	1 cut(s)	724
BsuI	GTATCC	1 cut(s)	730
BsuRI	GGCC	5 cut(s)	66, 75, 380, 498, 743
BtsCI	GGATG	1 cut(s)	844
BtsIMutI	CAGTG	3 cut(s)	567, 612, 822
CfoI	GCGC	1 cut(s)	556
Cfr10I	RCCGGY	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	1 cut(s)	293
Csp6I	GTAC	5 cut(s)	79, 118, 268, 324, 346
CviAII	CATG	3 cut(s)	156, 365, 434
CviQI	GTAC	5 cut(s)	79, 118, 268, 324, 346
DdeI	CTNAG	4 cut(s)	233, 315, 615, 724
DpnI	GATC	6 cut(s)	132, 192, 203, 404, 459, 876
DpnII	GATC	6 cut(s)	130, 190, 201, 402, 457, 874
EaeI	YGGCCR	2 cut(s)	73, 496
EagI	CGGCCG	1 cut(s)	73
Ecl136II	GAGCTC	1 cut(s)	88
EclXI	CGGCCG	1 cut(s)	73
Eco105I	TACGTA	1 cut(s)	176
Eco130I	CCWWGG	2 cut(s)	91, 666
Eco147I	AGGCCT	2 cut(s)	380, 743
Eco24I	GRGCYC	1 cut(s)	90
Eco31I	GGTCTC	1 cut(s)	805
Eco52I	CGGCCG	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	88
Eco81I	CCTNAGG	1 cut(s)	724
Eco91I	GGTNACC	1 cut(s)	661
EcoICRI	GAGCTC	1 cut(s)	88
EcoO65I	GGTNACC	1 cut(s)	661
EcoRII	CCWGG	2 cut(s)	498, 738
EcoT14I	CCWWGG	2 cut(s)	91, 666
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	2 cut(s)	91, 666
FaeI	CATG	3 cut(s)	159, 368, 437
FaqI	GGGAC	2 cut(s)	296, 583
FatI	CATG	3 cut(s)	155, 364, 433
FauI	CCCGC	3 cut(s)	92, 273, 323
FbaI	TGATCA	1 cut(s)	874
Fnu4HI	GCNGC	3 cut(s)	67, 469, 528
FokI	GGATG	1 cut(s)	851
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	3 cut(s)	67, 469, 528
FspBI	CTAG	2 cut(s)	92, 804
GlaI	GCGC	1 cut(s)	555
GluI	GCNGC	3 cut(s)	67, 469, 528
GsaI	CCCAGC	1 cut(s)	802
GsuI	CTGGAG	1 cut(s)	558
HaeIII	GGCC	5 cut(s)	66, 75, 380, 498, 743
HapII	CCGG	3 cut(s)	76, 121, 764
HgaI	GACGC	1 cut(s)	293
HhaI	GCGC	1 cut(s)	556
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	3 cut(s)	159, 368, 437
Hin6I	GCGC	1 cut(s)	554
HinP1I	GCGC	1 cut(s)	554
HincII	GTYRAC	2 cut(s)	243, 784
HindII	GTYRAC	2 cut(s)	243, 784
HinfI	GANTC	1 cut(s)	571
HpaII	CCGG	3 cut(s)	76, 121, 764
HphI	GGTGA	4 cut(s)	514, 524, 673, 781
Hpy166II	GTNNAC	4 cut(s)	118, 243, 625, 784
Hpy188I	TCNGA	3 cut(s)	31, 220, 234
Hpy188III	TCNNGA	5 cut(s)	134, 205, 575, 726, 878
Hpy8I	GTNNAC	4 cut(s)	118, 243, 625, 784
HpyAV	CCTTC	5 cut(s)	133, 370, 404, 709, 825
HpyCH4IV	ACGT	3 cut(s)	175, 273, 882
HpyCH4V	TGCA	4 cut(s)	427, 468, 701, 854
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
HpyF3I	CTNAG	4 cut(s)	233, 315, 615, 724
HpySE526I	ACGT	3 cut(s)	175, 273, 882
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	3 cut(s)	159, 368, 437
HspAI	GCGC	1 cut(s)	554
Ksp22I	TGATCA	1 cut(s)	874
Kzo9I	GATC	6 cut(s)	130, 190, 201, 402, 457, 874
LmnI	GCTCC	1 cut(s)	93
Lsp1109I	GCAGC	2 cut(s)	480, 514
LweI	GCATC	1 cut(s)	829
MaeI	CTAG	2 cut(s)	92, 804
MaeII	ACGT	3 cut(s)	175, 273, 882
MaeIII	GTNAC	3 cut(s)	176, 661, 689
MalI	GATC	6 cut(s)	132, 192, 203, 404, 459, 876
MboI	GATC	6 cut(s)	130, 190, 201, 402, 457, 874
MboII	GAAGA	7 cut(s)	364, 397, 517, 553, 614, 617, 872
MfeI	CAATTG	2 cut(s)	463, 855
MflI	RGATCY	2 cut(s)	402, 457
MhlI	GDGCHC	1 cut(s)	90
MlsI	TGGCCA	1 cut(s)	498
MluCI	AATT	5 cut(s)	304, 334, 463, 578, 855
MluNI	TGGCCA	1 cut(s)	498
MlyI	GAGTC	1 cut(s)	565
MmeI	TCCRAC	2 cut(s)	54, 396
MnlI	CCTC	9 cut(s)	142, 201, 214, 228, 310, 333, 733, 760, 803
Mox20I	TGGCCA	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	498
MseI	TTAA	1 cut(s)	849
MslI	CAYNNNNRTG	3 cut(s)	363, 432, 617
Msp20I	TGGCCA	1 cut(s)	498
MspI	CCGG	3 cut(s)	76, 121, 764
MspR9I	CCNGG	4 cut(s)	122, 500, 740, 764
MunI	CAATTG	2 cut(s)	463, 855
Mva1269I	GAATGC	1 cut(s)	556
MvaI	CCWGG	2 cut(s)	500, 740
MwoI	GCNNNNNNNGC	1 cut(s)	72
NciI	CCSGG	2 cut(s)	122, 764
NdeII	GATC	6 cut(s)	130, 190, 201, 402, 457, 874
NlaIII	CATG	3 cut(s)	159, 368, 437
NlaIV	GGNNCC	2 cut(s)	161, 588
NmeAIII	GCCGAG	2 cut(s)	33, 313
NmuCI	GTSAC	2 cut(s)	661, 689
NspI	RCATGY	1 cut(s)	368
PceI	AGGCCT	2 cut(s)	380, 743
PctI	GAATGC	1 cut(s)	556
PkrI	GCNGC	3 cut(s)	68, 470, 529
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
Ppu21I	YACGTR	1 cut(s)	176
Psp124BI	GAGCTC	1 cut(s)	90
Psp6I	CCWGG	2 cut(s)	498, 738
PspEI	GGTNACC	1 cut(s)	661
PspFI	CCCAGC	1 cut(s)	798
PspGI	CCWGG	2 cut(s)	498, 738
PspN4I	GGNNCC	2 cut(s)	161, 588
PspPI	GGNCC	1 cut(s)	64
PsuI	RGATCY	2 cut(s)	402, 457
RsaI	GTAC	5 cut(s)	80, 119, 269, 325, 347
RsaNI	GTAC	5 cut(s)	79, 118, 268, 324, 346
RseI	CAYNNNNRTG	3 cut(s)	363, 432, 617
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	849
SatI	GCNGC	3 cut(s)	67, 469, 528
Sau3AI	GATC	6 cut(s)	130, 190, 201, 402, 457, 874
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	565
ScrFI	CCNGG	4 cut(s)	122, 500, 740, 764
SduI	GDGCHC	1 cut(s)	90
SfaNI	GCATC	1 cut(s)	829
SfcI	CTRYAG	2 cut(s)	531, 679
SfiI	GGCCNNNNNGGCC	1 cut(s)	72
SmiMI	CAYNNNNRTG	3 cut(s)	363, 432, 617
SmlI	CTYRAG	2 cut(s)	653, 833
SmoI	CTYRAG	2 cut(s)	653, 833
SnaBI	TACGTA	1 cut(s)	176
Sse9I	AATT	5 cut(s)	304, 334, 463, 578, 855
SseBI	AGGCCT	2 cut(s)	380, 743
SsiI	CCGC	4 cut(s)	67, 99, 280, 330
SspMI	CTAG	2 cut(s)	92, 804
SstI	GAGCTC	1 cut(s)	90
StuI	AGGCCT	2 cut(s)	380, 743
StyD4I	CCNGG	4 cut(s)	120, 498, 738, 762
StyI	CCWWGG	2 cut(s)	91, 666
TaiI	ACGT	3 cut(s)	178, 276, 885
TaqI	TCGA	4 cut(s)	129, 204, 371, 395
TasI	AATT	5 cut(s)	304, 334, 463, 578, 855
TatI	WGTACW	3 cut(s)	267, 323, 345
TauI	GCSGC	1 cut(s)	69
Tru1I	TTAA	1 cut(s)	849
Tru9I	TTAA	1 cut(s)	849
TscAI	CASTG	3 cut(s)	567, 619, 829
TseFI	GTSAC	2 cut(s)	661, 689
TseI	GCWGC	2 cut(s)	468, 527
Tsp45I	GTSAC	2 cut(s)	661, 689
TspDTI	ATGAA	5 cut(s)	34, 389, 440, 450, 615
TspRI	CASTG	3 cut(s)	567, 619, 829
XapI	RAATTY	2 cut(s)	334, 578
XceI	RCATGY	1 cut(s)	368
XcmI	CCANNNNNNNNNTGG	1 cut(s)	506
XmaJI	CCTAGG	1 cut(s)	91
XspI	CTAG	2 cut(s)	92, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.