Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001260

Physical Location & Seq

Genomic Coordinates Reverse (-)

8016084 .. 8017076

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g10410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAGCCGTGCATCATTCACATTGATCGATCTTAACTGCAGCAACATCTTCATCAACGGGAATACTGGCCAGGTGAAAATTGGTGATCTGGGGTTTGCAGCAATAGTGGGAAAGAACCATTTAGCACATTCGATTATAGGTACACCCGAGTACATGGCGCCCGAGCTGTATGAAGAGGATTACACAGAGATGGTGGACATATACTCGTTCGGGCTGTGCTTGCTGGAGATGGTGACAATGGAGATACCATACAGCGAGTGCGACTCTGTTGCTAAGATATACAAGAAGGTGACAACGGGTATCAAGCCCTTAGCATTGAACAAGGTGAACGATCCAGAGGTGAAGGCGTTCATTGAGAAAGCCATAGCCCAGCCGAGGGCAAGACCTACAGCCTCTGATCTTCTCAGGGATCCCTTCTTGTCTGAAGTCAATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

146

Amino Acids

16.05

Weight (kDa)

4.87

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	9 - 140	1.4e-23	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	10 - 136	1.1e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55560
fragaria_vesca	FvH4_3g22150 FvH4_6g41240
malus_domestica	MD03G1189000.v1.1 MD09G1121400.v1.1 MD11G1205200.v1.1 MD17G1112400.v1.1
prunus_persica	Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.4G232100_v2.0.a1 Prupe.4G232100_v2.0.a1
pyrus_communis	pycom03g14190 pycom03g14210 pycom09g04580 pycom11g17800 pycom17g10410
rosa_chinensis	RchiOBHm_Chr2g0156791 RchiOBHm_Chr5g0038001 RchiOBHm_Chr5g0038041 RchiOBHm_Chr5g0042541
rosa_laevigata	RLG00000020942 RLG00000034135
rosa_multiflora	Rmu_co8331393.1_g000001 Rmu_co8390513.1_g000001 Rmu_sc0002670.1_g000011 Rmu_sc0008149.1_g000008 Rmu_sc0008278.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038120 Rroxscaffold_1G00042890 Rroxscaffold_2G00092720
rosa_rugosa	Rorug02G0456200 Rorug05G0170100 Rorug05G0201300 Rorug05G0201400
rosa_samantha	Rh2AG521800 Rh2BG535200 Rh2CG506700 Rh2DG544200 Rh5BG261300 Rh5BG261600 Rh5BG291700 Rh5CG293600 Rh5CG323900 Rh5DG270500 Rh5DG270600 Rh5DG301500
rosa_wichuraiana	Rw2G043080 Rw5G023930 Rw5G024110 Rw5G024140 Rw5G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	157
AclWI	GGATC	3 cut(s)	326, 404, 417
AcoI	YGGCCR	1 cut(s)	67
AcyI	GRCGYC	1 cut(s)	158
AfaI	GTAC	2 cut(s)	142, 152
AfiI	CCNNNNNNNGG	2 cut(s)	375, 376
AgsI	TTSAA	1 cut(s)	319
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
AlwI	GGATC	3 cut(s)	326, 404, 417
AlwNI	CAGNNNCTG	1 cut(s)	395
Ama87I	CYCGRG	2 cut(s)	146, 161
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	2 cut(s)	39, 98
Asp700I	GAANNNNTTC	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	160
AsuHPI	GGTGA	6 cut(s)	85, 95, 244, 301, 337, 352
AvaI	CYCGRG	2 cut(s)	146, 161
BalI	TGGCCA	1 cut(s)	69
BamHI	GGATCC	1 cut(s)	409
BanI	GGYRCC	1 cut(s)	157
BbvI	GCAGC	2 cut(s)	51, 110
BccI	CCATC	2 cut(s)	184, 223
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BciT130I	CCWGG	1 cut(s)	71
BfmI	CTRYAG	2 cut(s)	37, 387
BfoI	RGCGCY	1 cut(s)	161
BisI	GCNGC	2 cut(s)	40, 99
BlsI	GCNGC	2 cut(s)	41, 100
Bme1390I	CCNGG	1 cut(s)	71
BmeT110I	CYCGRG	2 cut(s)	146, 161
BmiI	GGNNCC	2 cut(s)	159, 411
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	1 cut(s)	20
BplI	GAGNNNNNCTC	2 cut(s)	248, 280
BpmI	CTGGAG	1 cut(s)	245
Bpu10I	CCTNAGC	1 cut(s)	310
Bsa29I	ATCGAT	1 cut(s)	27
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	2 cut(s)	375, 376
Bse1I	ACTGG	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	71
BseCI	ATCGAT	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	374
BseLI	CCNNNNNNNGG	2 cut(s)	375, 376
BseMII	CTCAG	1 cut(s)	418
BseNI	ACTGG	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	51, 110
BseYI	CCCAGC	1 cut(s)	369
BshFI	GGCC	1 cut(s)	69
BshNI	GGYRCC	1 cut(s)	157
BshVI	ATCGAT	1 cut(s)	27
BsiHKCI	CYCGRG	2 cut(s)	146, 161
BslI	CCNNNNNNNGG	2 cut(s)	375, 376
BsnI	GGCC	1 cut(s)	69
BsoBI	CYCGRG	2 cut(s)	146, 161
Bsp143I	GATC	6 cut(s)	24, 28, 85, 331, 397, 409
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	1 cut(s)	417
BspDI	ATCGAT	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	159, 411
BspMAI	CTGCAG	1 cut(s)	41
BspPI	GGATC	3 cut(s)	326, 404, 417
BspT107I	GGYRCC	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	374
BssMI	GATC	6 cut(s)	24, 28, 85, 331, 397, 409
BssNI	GRCGYC	1 cut(s)	158
Bst2UI	CCWGG	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	168
BstACI	GRCGYC	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	221
BstDEI	CTNAG	3 cut(s)	273, 310, 404
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	6 cut(s)	27, 31, 88, 334, 400, 412
BstMBI	GATC	6 cut(s)	24, 28, 85, 331, 397, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	220
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	69
BstSFI	CTRYAG	2 cut(s)	37, 387
BstV1I	GCAGC	2 cut(s)	51, 110
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
Bsu15I	ATCGAT	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	69
BsuTUI	ATCGAT	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	221
CaiI	CAGNNNCTG	1 cut(s)	395
CfoI	GCGC	1 cut(s)	160
ClaI	ATCGAT	1 cut(s)	27
Csp6I	GTAC	2 cut(s)	141, 151
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	9 cut(s)	6, 69, 166, 214, 307, 362, 368, 373, 392
CviKI_1	RGCY	9 cut(s)	6, 69, 166, 214, 307, 362, 368, 373, 392
CviQI	GTAC	2 cut(s)	141, 151
DdeI	CTNAG	3 cut(s)	273, 310, 404
DinI	GGCGCC	1 cut(s)	159
DpnI	GATC	6 cut(s)	26, 30, 87, 333, 399, 411
DpnII	GATC	6 cut(s)	24, 28, 85, 331, 397, 409
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco88I	CYCGRG	2 cut(s)	146, 161
EcoRII	CCWGG	1 cut(s)	69
EgeI	GGCGCC	1 cut(s)	159
EheI	GGCGCC	1 cut(s)	159
FaeI	CATG	1 cut(s)	157
FaiI	YATR	8 cut(s)	137, 155, 171, 200, 202, 250, 280, 365
FatI	CATG	1 cut(s)	153
Fnu4HI	GCNGC	2 cut(s)	40, 99
Fsp4HI	GCNGC	2 cut(s)	40, 99
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	2 cut(s)	40, 99
GsaI	CCCAGC	1 cut(s)	373
GsuI	CTGGAG	1 cut(s)	245
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	69
HhaI	GCGC	1 cut(s)	160
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	157
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	1 cut(s)	263
HphI	GGTGA	6 cut(s)	85, 95, 244, 301, 337, 352
Hpy166II	GTNNAC	3 cut(s)	143, 196, 328
Hpy188I	TCNGA	2 cut(s)	397, 424
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	3 cut(s)	143, 196, 328
HpyAV	CCTTC	3 cut(s)	280, 337, 424
HpyCH4V	TGCA	3 cut(s)	11, 39, 98
HpyF10VI	GCNNNNNNNGC	1 cut(s)	220
HpyF3I	CTNAG	3 cut(s)	273, 310, 404
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	157
HspAI	GCGC	1 cut(s)	158
KasI	GGCGCC	1 cut(s)	157
Kzo9I	GATC	6 cut(s)	24, 28, 85, 331, 397, 409
LpnPI	CCDG	8 cut(s)	51, 56, 74, 83, 209, 348, 383, 391
Lsp1109I	GCAGC	2 cut(s)	51, 110
LweI	GCATC	1 cut(s)	20
MaeIII	GTNAC	2 cut(s)	232, 289
MalI	GATC	6 cut(s)	26, 30, 87, 333, 399, 411
MboI	GATC	6 cut(s)	24, 28, 85, 331, 397, 409
MboII	GAAGA	3 cut(s)	40, 185, 392
MflI	RGATCY	1 cut(s)	409
MlsI	TGGCCA	1 cut(s)	69
MluCI	AATT	1 cut(s)	78
MluNI	TGGCCA	1 cut(s)	69
Mly113I	GGCGCC	1 cut(s)	158
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	4 cut(s)	169, 331, 369, 403
Mox20I	TGGCCA	1 cut(s)	69
MroXI	GAANNNNTTC	1 cut(s)	347
MscI	TGGCCA	1 cut(s)	69
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	188
Msp20I	TGGCCA	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	220
NarI	GGCGCC	1 cut(s)	158
NdeII	GATC	6 cut(s)	24, 28, 85, 331, 397, 409
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	2 cut(s)	159, 411
NmeAIII	GCCGAG	1 cut(s)	399
NmuCI	GTSAC	2 cut(s)	232, 289
PdmI	GAANNNNTTC	1 cut(s)	347
PkrI	GCNGC	2 cut(s)	41, 100
PleI	GAGTC	1 cut(s)	257
PluTI	GGCGCC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	69
PspFI	CCCAGC	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	159, 411
PstI	CTGCAG	1 cut(s)	41
PstNI	CAGNNNCTG	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	409
RsaI	GTAC	2 cut(s)	142, 152
RsaNI	GTAC	2 cut(s)	141, 151
RseI	CAYNNNNRTG	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	2 cut(s)	40, 99
Sau3AI	GATC	6 cut(s)	24, 28, 85, 331, 397, 409
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	71
SetI	ASST	7 cut(s)	75, 142, 168, 291, 327, 342, 388
SfaNI	GCATC	1 cut(s)	20
SfcI	CTRYAG	2 cut(s)	37, 387
SfoI	GGCGCC	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	78
SspDI	GGCGCC	1 cut(s)	157
StyD4I	CCNGG	1 cut(s)	69
TaqI	TCGA	2 cut(s)	27, 131
TasI	AATT	1 cut(s)	78
TatI	WGTACW	1 cut(s)	150
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TseFI	GTSAC	2 cut(s)	232, 289
TseI	GCWGC	2 cut(s)	39, 98
Tsp45I	GTSAC	2 cut(s)	232, 289
TspDTI	ATGAA	3 cut(s)	40, 186, 340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	77
XmnI	GAANNNNTTC	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.