Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8331393.1

Orthogroup ID

OG0001260

Physical Location & Seq

Genomic Coordinates Reverse (-)

29 .. 598

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8331393.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgccgagtgaaggtgcagaccagtcggagggagacagcgaacccttcgtcgaaatagacccaacccagcggtacggccgttacgacgagctactgggttccggcgcagtcaaaaaggtgtaccgagcttttgatcaagaagagggcatagaggtggcatggaaccaggttaaactgagtaacttcatcaacgattccgccatgaccgaaaggctttactctgaggttcggttgctgaagtccctgaagaacaaaaacatcattgctttgcataacgtgtggagagacgaggagaaaaacattctgaatttcatgactgaggtttgtaccagtgggaatctgagggagtacaggaagaagcacaagaacgtttcgatgaaggcattgaagaagtggtcgtttcagatcttgaaagggttggagtatttgcatacgcatgagccctgtgtgattcatagagatctcaattgcagcaatgtgtttgtcaacgggaatcttggccaggtactcatgttattggaaagagtaaataggaagcgtgtttttttggtttacgggtatattccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

189

Amino Acids

21.98

Weight (kDa)

8.35

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55560
fragaria_vesca	FvH4_3g22150 FvH4_6g41240
malus_domestica	MD03G1189000.v1.1 MD09G1121400.v1.1 MD11G1205200.v1.1 MD17G1112400.v1.1
prunus_persica	Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.4G232100_v2.0.a1 Prupe.4G232100_v2.0.a1
pyrus_communis	pycom03g14190 pycom03g14210 pycom09g04580 pycom11g17800 pycom17g10410
rosa_chinensis	RchiOBHm_Chr2g0156791 RchiOBHm_Chr5g0038001 RchiOBHm_Chr5g0038041 RchiOBHm_Chr5g0042541
rosa_laevigata	RLG00000020942 RLG00000034135
rosa_multiflora	Rmu_co8331393.1_g000001 Rmu_co8390513.1_g000001 Rmu_sc0002670.1_g000011 Rmu_sc0008149.1_g000008 Rmu_sc0008278.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038120 Rroxscaffold_1G00042890 Rroxscaffold_2G00092720
rosa_rugosa	Rorug02G0456200 Rorug05G0170100 Rorug05G0201300 Rorug05G0201400
rosa_samantha	Rh2AG521800 Rh2BG535200 Rh2CG506700 Rh2DG544200 Rh5BG261300 Rh5BG261600 Rh5BG291700 Rh5CG293600 Rh5CG323900 Rh5DG270500 Rh5DG270600 Rh5DG301500
rosa_wichuraiana	Rw2G043080 Rw5G023930 Rw5G024110 Rw5G024140 Rw5G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	70, 198
AclI	AACGTT	1 cut(s)	369
AcoI	YGGCCR	2 cut(s)	76, 499
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	2 cut(s)	257, 266
AfaI	GTAC	5 cut(s)	74, 122, 328, 350, 507
AfiI	CCNNNNNNNGG	2 cut(s)	11, 28
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	2 cut(s)	388, 412
AjnI	CCWGG	2 cut(s)	165, 501
AluBI	AGCT	2 cut(s)	91, 128
AluI	AGCT	2 cut(s)	91, 128
Alw26I	GTCTC	2 cut(s)	27, 279
AoxI	GGCC	2 cut(s)	76, 499
ApeKI	GCWGC	1 cut(s)	471
ApoI	RAATTY	1 cut(s)	307
ArsI	GACNNNNNNTTYG	2 cut(s)	33, 65
AspLEI	GCGC	1 cut(s)	107
BaeI	ACNNNNGTAYC	4 cut(s)	64, 97, 497, 530
BalI	TGGCCA	1 cut(s)	501
BanII	GRGCYC	1 cut(s)	444
BbvI	GCAGC	1 cut(s)	483
BceAI	ACGGC	2 cut(s)	63, 91
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BciT130I	CCWGG	2 cut(s)	167, 503
BclI	TGATCA	1 cut(s)	133
BcoDI	GTCTC	2 cut(s)	27, 279
BglII	AGATCT	2 cut(s)	405, 460
BisI	GCNGC	1 cut(s)	472
BlsI	GCNGC	1 cut(s)	473
Bme1390I	CCNGG	2 cut(s)	167, 503
BmiI	GGNNCC	2 cut(s)	100, 164
BmrFI	CCNGG	2 cut(s)	167, 503
BmrI	ACTGGG	1 cut(s)	104
BmuI	ACTGGG	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 28
Bse1I	ACTGG	3 cut(s)	22, 99, 330
Bse3DI	GCAATG	2 cut(s)	261, 481
BseBI	CCWGG	2 cut(s)	167, 503
BseLI	CCNNNNNNNGG	2 cut(s)	11, 28
BseMI	GCAATG	2 cut(s)	261, 481
BseMII	CTCAG	4 cut(s)	167, 213, 309, 332
BseNI	ACTGG	3 cut(s)	22, 99, 330
BseRI	GAGGAG	1 cut(s)	305
BseX3I	CGGCCG	1 cut(s)	76
BseXI	GCAGC	1 cut(s)	483
BseYI	CCCAGC	1 cut(s)	66
BsgI	GTGCAG	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	2 cut(s)	78, 501
BsiEI	CGRYCG	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	2 cut(s)	11, 28
BsmAI	GTCTC	2 cut(s)	27, 279
BsmBI	CGTCTC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	78, 501
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	3 cut(s)	133, 405, 460
BspACI	CCGC	2 cut(s)	70, 198
BspANI	GGCC	2 cut(s)	78, 501
BspCNI	CTCAG	4 cut(s)	168, 214, 310, 333
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	2 cut(s)	100, 164
BsrDI	GCAATG	2 cut(s)	261, 481
BsrI	ACTGG	3 cut(s)	22, 99, 330
BssMI	GATC	3 cut(s)	133, 405, 460
Bst2UI	CCWGG	2 cut(s)	167, 503
Bst6I	CTCTTC	1 cut(s)	135
BstDEI	CTNAG	4 cut(s)	176, 222, 318, 341
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	3 cut(s)	136, 408, 463
BstMAI	GTCTC	2 cut(s)	27, 279
BstMBI	GATC	3 cut(s)	133, 405, 460
BstMCI	CGRYCG	1 cut(s)	79
BstNI	CCWGG	2 cut(s)	167, 503
BstSCI	CCNGG	2 cut(s)	165, 501
BstV1I	GCAGC	1 cut(s)	483
BstX2I	RGATCY	2 cut(s)	405, 460
BstYI	RGATCY	2 cut(s)	405, 460
BstZI	CGGCCG	1 cut(s)	76
BsuRI	GGCC	2 cut(s)	78, 501
BtsIMutI	CAGTG	1 cut(s)	337
CciI	TCATGA	1 cut(s)	312
CfoI	GCGC	1 cut(s)	107
CsiI	ACCWGGT	1 cut(s)	165
Csp6I	GTAC	5 cut(s)	73, 121, 327, 349, 506
CviAII	CATG	5 cut(s)	159, 202, 313, 437, 511
CviJI	RGCY	6 cut(s)	78, 91, 128, 214, 442, 501
CviKI_1	RGCY	6 cut(s)	78, 91, 128, 214, 442, 501
CviQI	GTAC	5 cut(s)	73, 121, 327, 349, 506
DdeI	CTNAG	4 cut(s)	176, 222, 318, 341
DpnI	GATC	3 cut(s)	135, 407, 462
DpnII	GATC	3 cut(s)	133, 405, 460
EaeI	YGGCCR	2 cut(s)	76, 499
EagI	CGGCCG	1 cut(s)	76
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
EciI	GGCGGA	1 cut(s)	187
EclXI	CGGCCG	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	444
Eco52I	CGGCCG	1 cut(s)	76
Eco57I	CTGAAG	2 cut(s)	257, 266
EcoRII	CCWGG	2 cut(s)	165, 501
EcoT38I	GRGCYC	1 cut(s)	444
Esp3I	CGTCTC	1 cut(s)	279
FaeI	CATG	5 cut(s)	162, 205, 316, 440, 514
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	5 cut(s)	158, 201, 312, 436, 510
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	472
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	1 cut(s)	472
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	1 cut(s)	472
GsaI	CCCAGC	1 cut(s)	70
HaeIII	GGCC	2 cut(s)	78, 501
HapII	CCGG	1 cut(s)	102
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	5 cut(s)	162, 205, 316, 440, 514
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HinfI	GANTC	4 cut(s)	194, 337, 451, 493
HpaII	CCGG	1 cut(s)	102
Hpy166II	GTNNAC	3 cut(s)	121, 487, 553
Hpy188I	TCNGA	5 cut(s)	28, 223, 306, 342, 405
Hpy188III	TCNNGA	3 cut(s)	137, 313, 409
Hpy8I	GTNNAC	3 cut(s)	121, 487, 553
Hpy99I	CGWCG	2 cut(s)	53, 89
HpyAV	CCTTC	3 cut(s)	5, 55, 373
HpyCH4IV	ACGT	2 cut(s)	276, 369
HpyCH4V	TGCA	4 cut(s)	17, 271, 430, 471
HpyF3I	CTNAG	4 cut(s)	176, 222, 318, 341
HpySE526I	ACGT	2 cut(s)	276, 369
Hsp92II	CATG	5 cut(s)	162, 205, 316, 440, 514
HspAI	GCGC	1 cut(s)	105
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	133, 405, 460
Lsp1109I	GCAGC	1 cut(s)	483
MabI	ACCWGGT	1 cut(s)	165
MaeII	ACGT	2 cut(s)	276, 369
MaeIII	GTNAC	2 cut(s)	80, 179
MalI	GATC	3 cut(s)	135, 407, 462
MboI	GATC	3 cut(s)	133, 405, 460
MboII	GAAGA	4 cut(s)	152, 259, 367, 400
MfeI	CAATTG	1 cut(s)	466
MflI	RGATCY	2 cut(s)	405, 460
MhlI	GDGCHC	1 cut(s)	444
MlsI	TGGCCA	1 cut(s)	501
MluCI	AATT	2 cut(s)	307, 466
MluNI	TGGCCA	1 cut(s)	501
MmeI	TCCRAC	2 cut(s)	6, 399
MnlI	CCTC	7 cut(s)	22, 136, 145, 217, 283, 313, 336
Mox20I	TGGCCA	1 cut(s)	501
MscI	TGGCCA	1 cut(s)	501
MseI	TTAA	2 cut(s)	171, 568
MslI	CAYNNNNRTG	2 cut(s)	152, 435
Msp20I	TGGCCA	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	70
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	2 cut(s)	167, 503
MunI	CAATTG	1 cut(s)	466
MvaI	CCWGG	2 cut(s)	167, 503
NdeII	GATC	3 cut(s)	133, 405, 460
NlaIII	CATG	5 cut(s)	162, 205, 316, 440, 514
NlaIV	GGNNCC	2 cut(s)	100, 164
NmeAIII	GCCGAG	1 cut(s)	30
PagI	TCATGA	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PfeI	GAWTC	4 cut(s)	194, 337, 451, 493
PkrI	GCNGC	1 cut(s)	473
Psp1406I	AACGTT	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	165, 501
PspFI	CCCAGC	1 cut(s)	66
PspGI	CCWGG	2 cut(s)	165, 501
PspN4I	GGNNCC	2 cut(s)	100, 164
PsuI	RGATCY	2 cut(s)	405, 460
RsaI	GTAC	5 cut(s)	74, 122, 328, 350, 507
RsaNI	GTAC	5 cut(s)	73, 121, 327, 349, 506
RseI	CAYNNNNRTG	2 cut(s)	152, 435
SaqAI	TTAA	2 cut(s)	171, 568
SatI	GCNGC	1 cut(s)	472
Sau3AI	GATC	3 cut(s)	133, 405, 460
ScrFI	CCNGG	2 cut(s)	167, 503
SduI	GDGCHC	1 cut(s)	444
SexAI	ACCWGGT	1 cut(s)	165
SmiMI	CAYNNNNRTG	2 cut(s)	152, 435
Sse9I	AATT	2 cut(s)	307, 466
SsiI	CCGC	2 cut(s)	70, 198
StyD4I	CCNGG	2 cut(s)	165, 501
TaiI	ACGT	2 cut(s)	279, 372
TaqI	TCGA	2 cut(s)	51, 374
TaqII	GACCGA	1 cut(s)	221
TasI	AATT	2 cut(s)	307, 466
TatI	WGTACW	1 cut(s)	348
TfiI	GAWTC	4 cut(s)	194, 337, 451, 493
Tru1I	TTAA	2 cut(s)	171, 568
Tru9I	TTAA	2 cut(s)	171, 568
TscAI	CASTG	1 cut(s)	337
TseI	GCWGC	1 cut(s)	471
TspDTI	ATGAA	4 cut(s)	175, 301, 392, 443
TspRI	CASTG	1 cut(s)	337
XapI	RAATTY	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.