Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001260

Physical Location & Seq

Genomic Coordinates Reverse (-)

14216994 .. 14217398

Gene Structure 405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00092720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGTTTTCATTTTACAGGTGAAGATCGGTGATCTGGGATTTGCAGCAATACTGGGGAGGAGCCACAAAGCACATACTGTTCTAGGAACTCCTGAGTTTATGGCACCTGAGCTCTACGAGGAGGATTACAATGAGATGGTGGACATATACTCGTTTGGGATGTGCTTGCTGGAGATGGTGACGAGGGAGATACCATACAGTGAATGTGACACTGTTGTCAAGATATACAGGAAGGTCACAGCTGGTATAAGGCCTGAATCCCTGTCCAAGGTGACTGATCCAGAGGTGAAGGCATTTATTGAGAAATCCATAGGCCAGCCGAGGGCAAGACCTTCAGCCTCTGACCTACTCAGAGACCCCTTCTTTTCTGAAGTCATTGCTGAAGAGCCTGATCCAAGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

134

Amino Acids

15.02

Weight (kDa)

4.74

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	6 - 122	1.7e-18	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 118	1.7e-10	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55560
fragaria_vesca	FvH4_3g22150 FvH4_6g41240
malus_domestica	MD03G1189000.v1.1 MD09G1121400.v1.1 MD11G1205200.v1.1 MD17G1112400.v1.1
prunus_persica	Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.4G232100_v2.0.a1 Prupe.4G232100_v2.0.a1
pyrus_communis	pycom03g14190 pycom03g14210 pycom09g04580 pycom11g17800 pycom17g10410
rosa_chinensis	RchiOBHm_Chr2g0156791 RchiOBHm_Chr5g0038001 RchiOBHm_Chr5g0038041 RchiOBHm_Chr5g0042541
rosa_laevigata	RLG00000020942 RLG00000034135
rosa_multiflora	Rmu_co8331393.1_g000001 Rmu_co8390513.1_g000001 Rmu_sc0002670.1_g000011 Rmu_sc0008149.1_g000008 Rmu_sc0008278.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038120 Rroxscaffold_1G00042890 Rroxscaffold_2G00092720
rosa_rugosa	Rorug02G0456200 Rorug05G0170100 Rorug05G0201300 Rorug05G0201400
rosa_samantha	Rh2AG521800 Rh2BG535200 Rh2CG506700 Rh2DG544200 Rh5BG261300 Rh5BG261600 Rh5BG291700 Rh5CG293600 Rh5CG323900 Rh5DG270500 Rh5DG270600 Rh5DG301500
rosa_wichuraiana	Rw2G043080 Rw5G023930 Rw5G024110 Rw5G024140 Rw5G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	215
AccB1I	GGYRCC	1 cut(s)	103
AclWI	GGATC	2 cut(s)	272, 386
AcuI	CTGAAG	3 cut(s)	318, 390, 402
AfiI	CCNNNNNNNGG	2 cut(s)	268, 322
AluBI	AGCT	3 cut(s)	112, 242, 399
AluI	AGCT	3 cut(s)	112, 242, 399
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	348
AlwI	GGATC	2 cut(s)	272, 386
AlwNI	CAGNNNCTG	1 cut(s)	341
AoxI	GGCC	2 cut(s)	251, 313
ApeKI	GCWGC	1 cut(s)	44
AsuHPI	GGTGA	5 cut(s)	31, 41, 190, 283, 298
BanI	GGYRCC	1 cut(s)	103
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	2 cut(s)	130, 169
BcoDI	GTCTC	1 cut(s)	348
BfaI	CTAG	1 cut(s)	83
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
BmiI	GGNNCC	2 cut(s)	62, 105
BmrI	ACTGGG	1 cut(s)	62
BmuI	ACTGGG	1 cut(s)	62
BpmI	CTGGAG	1 cut(s)	191
Bpu10I	CCTNAGC	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	267, 320
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 322
Bse1I	ACTGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	267, 320
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	2 cut(s)	268, 322
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	3 cut(s)	84, 99, 364
BseNI	ACTGG	1 cut(s)	57
BseRI	GAGGAG	2 cut(s)	73, 134
BseXI	GCAGC	1 cut(s)	56
BshFI	GGCC	2 cut(s)	253, 315
BshNI	GGYRCC	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	114
BslI	CCNNNNNNNGG	2 cut(s)	268, 322
BsmAI	GTCTC	1 cut(s)	348
BsnI	GGCC	2 cut(s)	253, 315
Bso31I	GGTCTC	1 cut(s)	348
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	4 cut(s)	24, 31, 277, 391
BspANI	GGCC	2 cut(s)	253, 315
BspCNI	CTCAG	3 cut(s)	85, 100, 363
BspLI	GGNNCC	2 cut(s)	62, 105
BspPI	GGATC	2 cut(s)	272, 386
BspQI	GCTCTTC	1 cut(s)	378
BspT107I	GGYRCC	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	348
BsrDI	GCAATG	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	267, 320
BssMI	GATC	4 cut(s)	24, 31, 277, 391
BssT1I	CCWWGG	1 cut(s)	267
Bst4CI	ACNGT	3 cut(s)	79, 200, 214
Bst6I	CTCTTC	1 cut(s)	378
BstC8I	GCNNGC	2 cut(s)	167, 317
BstDEI	CTNAG	3 cut(s)	93, 108, 350
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	165
BstKTI	GATC	4 cut(s)	27, 34, 280, 394
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	4 cut(s)	24, 31, 277, 391
BstV1I	GCAGC	1 cut(s)	56
BsuRI	GGCC	2 cut(s)	253, 315
BtsCI	GGATG	1 cut(s)	165
BtsIMutI	CAGTG	2 cut(s)	205, 210
Cac8I	GCNNGC	2 cut(s)	167, 317
CaiI	CAGNNNCTG	1 cut(s)	341
CviJI	RGCY	9 cut(s)	63, 112, 242, 253, 315, 319, 338, 388, 399
CviKI_1	RGCY	9 cut(s)	63, 112, 242, 253, 315, 319, 338, 388, 399
DdeI	CTNAG	3 cut(s)	93, 108, 350
DpnI	GATC	4 cut(s)	26, 33, 279, 393
DpnII	GATC	4 cut(s)	24, 31, 277, 391
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Ecl136II	GAGCTC	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	267
Eco147I	AGGCCT	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	348
Eco53kI	GAGCTC	1 cut(s)	112
Eco57I	CTGAAG	3 cut(s)	318, 390, 402
EcoICRI	GAGCTC	1 cut(s)	112
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	267
FaiI	YATR	8 cut(s)	75, 101, 146, 148, 196, 226, 248, 311
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	1 cut(s)	172
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	1 cut(s)	83
GluI	GCNGC	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	2 cut(s)	253, 315
HinfI	GANTC	1 cut(s)	257
HphI	GGTGA	5 cut(s)	31, 41, 190, 283, 298
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	3 cut(s)	343, 353, 370
Hpy188III	TCNNGA	4 cut(s)	92, 220, 281, 402
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	4 cut(s)	226, 283, 342, 370
HpyCH4III	ACNGT	3 cut(s)	79, 200, 214
HpyCH4V	TGCA	1 cut(s)	44
HpyF3I	CTNAG	3 cut(s)	93, 108, 350
Kzo9I	GATC	4 cut(s)	24, 31, 277, 391
LguI	GCTCTTC	1 cut(s)	378
LmnI	GCTCC	1 cut(s)	60
Lsp1109I	GCAGC	1 cut(s)	56
MaeI	CTAG	1 cut(s)	83
MaeIII	GTNAC	4 cut(s)	178, 206, 235, 271
MalI	GATC	4 cut(s)	26, 33, 279, 393
MboI	GATC	4 cut(s)	24, 31, 277, 391
MboII	GAAGA	2 cut(s)	34, 395
MhlI	GDGCHC	1 cut(s)	114
MnlI	CCTC	7 cut(s)	51, 112, 115, 177, 277, 315, 349
MspA1I	CMGCKG	1 cut(s)	242
NdeII	GATC	4 cut(s)	24, 31, 277, 391
NlaIV	GGNNCC	2 cut(s)	62, 105
NmeAIII	GCCGAG	1 cut(s)	345
NmuCI	GTSAC	4 cut(s)	178, 206, 235, 271
PceI	AGGCCT	1 cut(s)	253
PciSI	GCTCTTC	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	257
PkrI	GCNGC	1 cut(s)	46
Psp124BI	GAGCTC	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	62, 105
PstNI	CAGNNNCTG	1 cut(s)	341
PvuII	CAGCTG	1 cut(s)	242
SacI	GAGCTC	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	378
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	4 cut(s)	24, 31, 277, 391
SduI	GDGCHC	1 cut(s)	114
SseBI	AGGCCT	1 cut(s)	253
SspMI	CTAG	1 cut(s)	83
SstI	GAGCTC	1 cut(s)	114
StuI	AGGCCT	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	3 cut(s)	79, 200, 214
TfiI	GAWTC	1 cut(s)	257
TscAI	CASTG	2 cut(s)	205, 217
TseFI	GTSAC	4 cut(s)	178, 206, 235, 271
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	4 cut(s)	178, 206, 235, 271
TspRI	CASTG	2 cut(s)	205, 217
XagI	CCTNNNNNAGG	1 cut(s)	266
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.