Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8390513.1

Orthogroup ID

OG0001260

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 479

Gene Structure 479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8390513.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

gtgaagatcggtgatctgggatttgcagcaatactggggaggagccacaaagcacatactgttctaggaactcctgagtttatggcacctgagctctacgaggaggattacaatgagatggtggacatatactcgtttgggatgtgcttgctggagatggtaacgagggagataccatacagtgaatgtgacactgttgtcaagatatacaggaaggtcacagctggtataaggcctgaatccctgtccaaggtgactgatccagaggtgaaggcatttattgagaaatccataggccagccgagggcaagaccttcagcctctgacctactcagagaccccttcttttctgacgtcattgctgaagagcctgatccaagctattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

128

Amino Acids

14.35

Weight (kDa)

4.73

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55560
fragaria_vesca	FvH4_3g22150 FvH4_6g41240
malus_domestica	MD03G1189000.v1.1 MD09G1121400.v1.1 MD11G1205200.v1.1 MD17G1112400.v1.1
prunus_persica	Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.4G232100_v2.0.a1 Prupe.4G232100_v2.0.a1
pyrus_communis	pycom03g14190 pycom03g14210 pycom09g04580 pycom11g17800 pycom17g10410
rosa_chinensis	RchiOBHm_Chr2g0156791 RchiOBHm_Chr5g0038001 RchiOBHm_Chr5g0038041 RchiOBHm_Chr5g0042541
rosa_laevigata	RLG00000020942 RLG00000034135
rosa_multiflora	Rmu_co8331393.1_g000001 Rmu_co8390513.1_g000001 Rmu_sc0002670.1_g000011 Rmu_sc0008149.1_g000008 Rmu_sc0008278.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038120 Rroxscaffold_1G00042890 Rroxscaffold_2G00092720
rosa_rugosa	Rorug02G0456200 Rorug05G0170100 Rorug05G0201300 Rorug05G0201400
rosa_samantha	Rh2AG521800 Rh2BG535200 Rh2CG506700 Rh2DG544200 Rh5BG261300 Rh5BG261600 Rh5BG291700 Rh5CG293600 Rh5CG323900 Rh5DG270500 Rh5DG270600 Rh5DG301500
rosa_wichuraiana	Rw2G043080 Rw5G023930 Rw5G024110 Rw5G024140 Rw5G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	197
AatII	GACGTC	1 cut(s)	357
AccB1I	GGYRCC	1 cut(s)	85
AclWI	GGATC	2 cut(s)	254, 368
AcuI	CTGAAG	2 cut(s)	300, 384
AcyI	GRCGYC	1 cut(s)	354
AfiI	CCNNNNNNNGG	2 cut(s)	250, 304
AluBI	AGCT	3 cut(s)	94, 224, 381
AluI	AGCT	3 cut(s)	94, 224, 381
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	330
AlwI	GGATC	2 cut(s)	254, 368
AlwNI	CAGNNNCTG	1 cut(s)	323
AoxI	GGCC	2 cut(s)	233, 295
ApeKI	GCWGC	1 cut(s)	26
AsuHPI	GGTGA	3 cut(s)	23, 265, 280
BanI	GGYRCC	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	2 cut(s)	112, 151
BcoDI	GTCTC	1 cut(s)	330
BfaI	CTAG	1 cut(s)	65
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
BmiI	GGNNCC	2 cut(s)	44, 87
BmrI	ACTGGG	1 cut(s)	44
BmuI	ACTGGG	1 cut(s)	44
BpmI	CTGGAG	1 cut(s)	173
Bpu10I	CCTNAGC	1 cut(s)	90
BsaHI	GRCGYC	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	330
BsaJI	CCNNGG	2 cut(s)	249, 302
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 304
Bse1I	ACTGG	1 cut(s)	39
Bse3DI	GCAATG	1 cut(s)	357
BseDI	CCNNGG	2 cut(s)	249, 302
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	2 cut(s)	250, 304
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	3 cut(s)	66, 81, 346
BseNI	ACTGG	1 cut(s)	39
BseRI	GAGGAG	2 cut(s)	55, 116
BseXI	GCAGC	1 cut(s)	38
BshFI	GGCC	2 cut(s)	235, 297
BshNI	GGYRCC	1 cut(s)	85
BsiHKAI	GWGCWC	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	250, 304
BsmAI	GTCTC	1 cut(s)	330
BsnI	GGCC	2 cut(s)	235, 297
Bso31I	GGTCTC	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	4 cut(s)	6, 13, 259, 373
BspANI	GGCC	2 cut(s)	235, 297
BspCNI	CTCAG	3 cut(s)	67, 82, 345
BspLI	GGNNCC	2 cut(s)	44, 87
BspPI	GGATC	2 cut(s)	254, 368
BspQI	GCTCTTC	1 cut(s)	360
BspT107I	GGYRCC	1 cut(s)	85
BspTNI	GGTCTC	1 cut(s)	330
BsrDI	GCAATG	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	2 cut(s)	249, 302
BssMI	GATC	4 cut(s)	6, 13, 259, 373
BssNI	GRCGYC	1 cut(s)	354
BssT1I	CCWWGG	1 cut(s)	249
Bst4CI	ACNGT	3 cut(s)	61, 182, 196
Bst6I	CTCTTC	1 cut(s)	360
BstACI	GRCGYC	1 cut(s)	354
BstC8I	GCNNGC	2 cut(s)	149, 299
BstDEI	CTNAG	3 cut(s)	75, 90, 332
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	1 cut(s)	147
BstKTI	GATC	4 cut(s)	9, 16, 262, 376
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	4 cut(s)	6, 13, 259, 373
BstV1I	GCAGC	1 cut(s)	38
BsuRI	GGCC	2 cut(s)	235, 297
BtsCI	GGATG	1 cut(s)	147
BtsIMutI	CAGTG	2 cut(s)	187, 192
Cac8I	GCNNGC	2 cut(s)	149, 299
CaiI	CAGNNNCTG	1 cut(s)	323
CviJI	RGCY	9 cut(s)	45, 94, 224, 235, 297, 301, 320, 370, 381
CviKI_1	RGCY	9 cut(s)	45, 94, 224, 235, 297, 301, 320, 370, 381
DdeI	CTNAG	3 cut(s)	75, 90, 332
DpnI	GATC	4 cut(s)	8, 15, 261, 375
DpnII	GATC	4 cut(s)	6, 13, 259, 373
DrdI	GACNNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	197
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	249
Eco147I	AGGCCT	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	330
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	2 cut(s)	300, 384
EcoICRI	GAGCTC	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoT14I	CCWWGG	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	249
FaiI	YATR	8 cut(s)	57, 83, 128, 130, 178, 208, 230, 293
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	1 cut(s)	154
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	1 cut(s)	27
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	2 cut(s)	235, 297
Hin1I	GRCGYC	1 cut(s)	354
HinfI	GANTC	1 cut(s)	239
HphI	GGTGA	3 cut(s)	23, 265, 280
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	3 cut(s)	325, 335, 352
Hpy188III	TCNNGA	3 cut(s)	74, 202, 263
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	4 cut(s)	208, 265, 324, 352
HpyCH4III	ACNGT	3 cut(s)	61, 182, 196
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	1 cut(s)	26
HpyF3I	CTNAG	3 cut(s)	75, 90, 332
HpySE526I	ACGT	1 cut(s)	354
Hsp92I	GRCGYC	1 cut(s)	354
Kzo9I	GATC	4 cut(s)	6, 13, 259, 373
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	1 cut(s)	42
Lsp1109I	GCAGC	1 cut(s)	38
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	4 cut(s)	160, 188, 217, 253
MalI	GATC	4 cut(s)	8, 15, 261, 375
MboI	GATC	4 cut(s)	6, 13, 259, 373
MboII	GAAGA	2 cut(s)	16, 377
MhlI	GDGCHC	1 cut(s)	96
MnlI	CCTC	7 cut(s)	33, 94, 97, 159, 259, 297, 331
MspA1I	CMGCKG	1 cut(s)	224
NdeII	GATC	4 cut(s)	6, 13, 259, 373
NlaIV	GGNNCC	2 cut(s)	44, 87
NmeAIII	GCCGAG	1 cut(s)	327
NmuCI	GTSAC	3 cut(s)	188, 217, 253
PceI	AGGCCT	1 cut(s)	235
PciSI	GCTCTTC	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	28
Psp124BI	GAGCTC	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	44, 87
PstNI	CAGNNNCTG	1 cut(s)	323
PvuII	CAGCTG	1 cut(s)	224
SacI	GAGCTC	1 cut(s)	96
SapI	GCTCTTC	1 cut(s)	360
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	4 cut(s)	6, 13, 259, 373
SduI	GDGCHC	1 cut(s)	96
SseBI	AGGCCT	1 cut(s)	235
SspMI	CTAG	1 cut(s)	65
SstI	GAGCTC	1 cut(s)	96
StuI	AGGCCT	1 cut(s)	235
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	3 cut(s)	61, 182, 196
TaiI	ACGT	1 cut(s)	357
TfiI	GAWTC	1 cut(s)	239
TscAI	CASTG	2 cut(s)	187, 199
TseFI	GTSAC	3 cut(s)	188, 217, 253
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	3 cut(s)	188, 217, 253
TspRI	CASTG	2 cut(s)	187, 199
XagI	CCTNNNNNAGG	1 cut(s)	248
XspI	CTAG	1 cut(s)	65
ZraI	GACGTC	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.