Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001260

Physical Location & Seq

Genomic Coordinates Reverse (-)

33902065 .. 33903135

Gene Structure 1071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G023930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCTATTGGGTATGGGAAACCAATCCCTCCCGACCCTAGAGCACAAAACAAATCCAATTAGGACATTTCACCAAACCCACCATACTACATTTATGGCAGTCAAGGATCCTAATACTTTTGATCCAGATTCCGAACCATTTGTGGAGGTTGATCCAACCGGGCGTTTTGGAAGGTATGATGTTCTCCTTGGTAAGGGTGCTGTGAAGAAGGTGTACAGGGCATTTGATCAGCAGCAAGGTAACGAGGTGGCGTGGAATAAAGTGTGGTTAAAGAAATTGAGCGACGATCCAGTGCTATCGAATCATCTGGACGCAGAGGTTAAGCTATTGAGAGAGTTGGAGAACAAGTATATCATTGAATGTCACAGTGTTTGGAAGGATGTCAAGCGTAATGCTTTCAATTTCGTTACTGAGGTGTGCAATTCTGGGAACCTGAGGGATTATAGGAAGAAGCATCACCGTGTGAATACTAAGGCTTTGAAGAAGTGGTCAAAGCAGGTGCTTGAGGGATTGGAGTACCTCCATACACATGAGCCATGCATCATTCACAGAGATCTCAATTGCAGTAACATCTTCGTCAATGGGAATAATGGCCAGGTGAAGATCGCTCACACAGTTATAGGGACACCTGAGTTTATGGCACCTGAACTATACGAGGAGGATTACAATGAGATGGTGGACATATATTCGTTTGGGATGTGCTTGCTGGAGATGGCAACAAGGGAGATACCATACAGTGAATGTGAAACTGTTGTCAAGATTTACAGGGAGGTCTCAACTGGTATAAGGCCTGAATCCTTGTCCAAGGTGACCGATCCAGAGGTGAAGGCATTTATTGAGAAATCCCTAGGTCAGCCGAGGGCAAGACCTTCAGCCTCTGAGCTACTCAGAGACCCCTTCTTTTCTCAAGTCATTGCCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

307

Amino Acids

35.33

Weight (kDa)

6.33

Isoelectric Point (pI)

33.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	62 - 301	7.6e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	62 - 203	7.2e-19	Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr	PF07714	211 - 297	1.2e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55560
fragaria_vesca	FvH4_3g22150 FvH4_6g41240
malus_domestica	MD03G1189000.v1.1 MD09G1121400.v1.1 MD11G1205200.v1.1 MD17G1112400.v1.1
prunus_persica	Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.4G232100_v2.0.a1 Prupe.4G232100_v2.0.a1
pyrus_communis	pycom03g14190 pycom03g14210 pycom09g04580 pycom11g17800 pycom17g10410
rosa_chinensis	RchiOBHm_Chr2g0156791 RchiOBHm_Chr5g0038001 RchiOBHm_Chr5g0038041 RchiOBHm_Chr5g0042541
rosa_laevigata	RLG00000020942 RLG00000034135
rosa_multiflora	Rmu_co8331393.1_g000001 Rmu_co8390513.1_g000001 Rmu_sc0002670.1_g000011 Rmu_sc0008149.1_g000008 Rmu_sc0008278.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038120 Rroxscaffold_1G00042890 Rroxscaffold_2G00092720
rosa_rugosa	Rorug02G0456200 Rorug05G0170100 Rorug05G0201300 Rorug05G0201400
rosa_samantha	Rh2AG521800 Rh2BG535200 Rh2CG506700 Rh2DG544200 Rh5BG261300 Rh5BG261600 Rh5BG291700 Rh5CG293600 Rh5CG323900 Rh5DG270500 Rh5DG270600 Rh5DG301500
rosa_wichuraiana	Rw2G043080 Rw5G023930 Rw5G024110 Rw5G024140 Rw5G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	487
Acc36I	ACCTGC	1 cut(s)	487
AccB1I	GGYRCC	1 cut(s)	640
AclWI	GGATC	6 cut(s)	101, 114, 116, 146, 281, 809
AcoI	YGGCCR	1 cut(s)	592
AcuI	CTGAAG	1 cut(s)	855
AdeI	CACNNNGTG	1 cut(s)	463
AfaI	GTAC	2 cut(s)	215, 518
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	3 cut(s)	359, 400, 481
AjnI	CCWGG	1 cut(s)	594
AluBI	AGCT	2 cut(s)	325, 883
AluI	AGCT	2 cut(s)	325, 883
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	2 cut(s)	778, 885
AlwI	GGATC	6 cut(s)	101, 114, 116, 146, 281, 809
AlwNI	CAGNNNCTG	1 cut(s)	878
AoxI	GGCC	2 cut(s)	592, 788
ApeKI	GCWGC	1 cut(s)	232
AspA2I	CCTAGG	1 cut(s)	847
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	5 cut(s)	62, 449, 610, 820, 835
AvrII	CCTAGG	1 cut(s)	847
AxyI	CCTNAGG	1 cut(s)	434
BalI	TGGCCA	1 cut(s)	594
BamHI	GGATCC	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	640
BarI	GAAGNNNNNNTAC	2 cut(s)	197, 229
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	2 cut(s)	667, 706
BciT130I	CCWGG	1 cut(s)	596
BclI	TGATCA	1 cut(s)	226
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	778, 885
BfaI	CTAG	2 cut(s)	38, 848
BfuAI	ACCTGC	1 cut(s)	487
BglII	AGATCT	1 cut(s)	553
BisI	GCNGC	1 cut(s)	233
BlnI	CCTAGG	1 cut(s)	847
BlsI	GCNGC	1 cut(s)	234
Bme1390I	CCNGG	2 cut(s)	160, 596
BmiI	GGNNCC	3 cut(s)	108, 431, 642
BmrFI	CCNGG	2 cut(s)	160, 596
BmsI	GCATC	2 cut(s)	463, 549
BpmI	CTGGAG	1 cut(s)	728
BpuEI	CTTGAG	2 cut(s)	524, 891
BpuMI	CCSGG	1 cut(s)	160
BsaI	GGTCTC	2 cut(s)	778, 885
BsaJI	CCNNGG	4 cut(s)	187, 804, 847, 857
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse1I	ACTGG	2 cut(s)	290, 784
Bse21I	CCTNAGG	1 cut(s)	434
Bse3DI	GCAATG	1 cut(s)	912
BseBI	CCWGG	1 cut(s)	596
BseDI	CCNNGG	4 cut(s)	187, 804, 847, 857
BseGI	GGATG	2 cut(s)	385, 702
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMI	GCAATG	1 cut(s)	912
BseMII	CTCAG	5 cut(s)	402, 425, 621, 870, 901
BseNI	ACTGG	2 cut(s)	290, 784
BseRI	GAGGAG	1 cut(s)	671
BseXI	GCAGC	1 cut(s)	244
BshFI	GGCC	2 cut(s)	594, 790
BshNI	GGYRCC	1 cut(s)	640
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	637
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	2 cut(s)	778, 885
BsmFI	GGGAC	1 cut(s)	637
BsnI	GGCC	2 cut(s)	594, 790
Bso31I	GGTCTC	2 cut(s)	778, 885
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	8 cut(s)	106, 121, 151, 226, 286, 553, 603, 814
BspANI	GGCC	2 cut(s)	594, 790
BspCNI	CTCAG	5 cut(s)	403, 426, 622, 871, 900
BspLI	GGNNCC	3 cut(s)	108, 431, 642
BspMI	ACCTGC	1 cut(s)	487
BspPI	GGATC	6 cut(s)	101, 114, 116, 146, 281, 809
BspT107I	GGYRCC	1 cut(s)	640
BspTNI	GGTCTC	2 cut(s)	778, 885
BsrDI	GCAATG	1 cut(s)	912
BsrGI	TGTACA	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	290, 784
BssECI	CCNNGG	4 cut(s)	187, 804, 847, 857
BssMI	GATC	8 cut(s)	106, 121, 151, 226, 286, 553, 603, 814
BssT1I	CCWWGG	3 cut(s)	187, 804, 847
Bst2UI	CCWGG	1 cut(s)	596
Bst4CI	ACNGT	5 cut(s)	368, 461, 616, 737, 751
BstAUI	TGTACA	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	704
BstDEI	CTNAG	6 cut(s)	411, 434, 471, 630, 879, 887
BstEII	GGTNACC	1 cut(s)	808
BstENI	CCTNNNNNAGG	1 cut(s)	191
BstF5I	GGATG	2 cut(s)	385, 702
BstKTI	GATC	8 cut(s)	109, 124, 154, 229, 289, 556, 606, 817
BstMAI	GTCTC	2 cut(s)	778, 885
BstMBI	GATC	8 cut(s)	106, 121, 151, 226, 286, 553, 603, 814
BstNI	CCWGG	1 cut(s)	596
BstPI	GGTNACC	1 cut(s)	808
BstSCI	CCNGG	2 cut(s)	158, 594
BstV1I	GCAGC	1 cut(s)	244
BstX2I	RGATCY	2 cut(s)	106, 553
BstYI	RGATCY	2 cut(s)	106, 553
Bsu36I	CCTNAGG	1 cut(s)	434
BsuRI	GGCC	2 cut(s)	594, 790
BtsCI	GGATG	2 cut(s)	385, 702
BtsIMutI	CAGTG	3 cut(s)	297, 373, 742
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	1 cut(s)	704
CaiI	CAGNNNCTG	1 cut(s)	878
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	2 cut(s)	214, 517
CviAII	CATG	2 cut(s)	530, 537
CviJI	RGCY	8 cut(s)	325, 476, 535, 594, 790, 856, 875, 883
CviKI_1	RGCY	8 cut(s)	325, 476, 535, 594, 790, 856, 875, 883
CviQI	GTAC	2 cut(s)	214, 517
DdeI	CTNAG	6 cut(s)	411, 434, 471, 630, 879, 887
DpnI	GATC	8 cut(s)	108, 123, 153, 228, 288, 555, 605, 816
DpnII	GATC	8 cut(s)	106, 121, 151, 226, 286, 553, 603, 814
DraIII	CACNNNGTG	1 cut(s)	463
EaeI	YGGCCR	1 cut(s)	592
Eco130I	CCWWGG	3 cut(s)	187, 804, 847
Eco147I	AGGCCT	1 cut(s)	790
Eco31I	GGTCTC	2 cut(s)	778, 885
Eco57I	CTGAAG	1 cut(s)	855
Eco81I	CCTNAGG	1 cut(s)	434
Eco91I	GGTNACC	1 cut(s)	808
EcoNI	CCTNNNNNAGG	1 cut(s)	191
EcoO65I	GGTNACC	1 cut(s)	808
EcoRII	CCWGG	1 cut(s)	594
EcoT14I	CCWWGG	3 cut(s)	187, 804, 847
EcoT22I	ATGCAT	1 cut(s)	542
ErhI	CCWWGG	3 cut(s)	187, 804, 847
FaeI	CATG	2 cut(s)	533, 540
FaqI	GGGAC	1 cut(s)	637
FatI	CATG	2 cut(s)	529, 536
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	1 cut(s)	233
FokI	GGATG	2 cut(s)	392, 709
Fsp4HI	GCNGC	1 cut(s)	233
FspBI	CTAG	2 cut(s)	38, 848
GluI	GCNGC	1 cut(s)	233
GsuI	CTGGAG	1 cut(s)	728
HaeIII	GGCC	2 cut(s)	594, 790
HapII	CCGG	1 cut(s)	159
HgaI	GACGC	1 cut(s)	320
Hin1II	CATG	2 cut(s)	533, 540
HinfI	GANTC	3 cut(s)	128, 301, 794
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	5 cut(s)	62, 449, 610, 820, 835
Hpy166II	GTNNAC	2 cut(s)	214, 679
Hpy188I	TCNGA	3 cut(s)	133, 880, 890
Hpy188III	TCNNGA	5 cut(s)	31, 125, 308, 757, 818
Hpy8I	GTNNAC	2 cut(s)	214, 679
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	6 cut(s)	165, 202, 370, 820, 879, 907
HpyCH4III	ACNGT	5 cut(s)	368, 461, 616, 737, 751
HpyCH4V	TGCA	3 cut(s)	420, 540, 564
HpyF3I	CTNAG	6 cut(s)	411, 434, 471, 630, 879, 887
Hsp92II	CATG	2 cut(s)	533, 540
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	8 cut(s)	106, 121, 151, 226, 286, 553, 603, 814
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	2 cut(s)	463, 549
MaeI	CTAG	2 cut(s)	38, 848
MaeIII	GTNAC	5 cut(s)	239, 362, 406, 566, 808
MalI	GATC	8 cut(s)	108, 123, 153, 228, 288, 555, 605, 816
MboI	GATC	8 cut(s)	106, 121, 151, 226, 286, 553, 603, 814
MboII	GAAGA	5 cut(s)	217, 460, 493, 565, 613
MfeI	CAATTG	1 cut(s)	559
MflI	RGATCY	2 cut(s)	106, 553
MhlI	GDGCHC	1 cut(s)	45
MlsI	TGGCCA	1 cut(s)	594
MluCI	AATT	5 cut(s)	57, 275, 400, 421, 559
MluNI	TGGCCA	1 cut(s)	594
MmeI	TCCRAC	2 cut(s)	179, 318
Mox20I	TGGCCA	1 cut(s)	594
Mph1103I	ATGCAT	1 cut(s)	542
MscI	TGGCCA	1 cut(s)	594
MseI	TTAA	2 cut(s)	269, 321
MslI	CAYNNNNRTG	2 cut(s)	459, 528
Msp20I	TGGCCA	1 cut(s)	594
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	2 cut(s)	160, 596
MunI	CAATTG	1 cut(s)	559
MvaI	CCWGG	1 cut(s)	596
NciI	CCSGG	1 cut(s)	160
NdeII	GATC	8 cut(s)	106, 121, 151, 226, 286, 553, 603, 814
NlaIII	CATG	2 cut(s)	533, 540
NlaIV	GGNNCC	3 cut(s)	108, 431, 642
NmeAIII	GCCGAG	1 cut(s)	882
NmuCI	GTSAC	2 cut(s)	362, 808
NsiI	ATGCAT	1 cut(s)	542
PaqCI	CACCTGC	1 cut(s)	487
PceI	AGGCCT	1 cut(s)	790
PfeI	GAWTC	3 cut(s)	128, 301, 794
PkrI	GCNGC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	594
PspEI	GGTNACC	1 cut(s)	808
PspGI	CCWGG	1 cut(s)	594
PspN4I	GGNNCC	3 cut(s)	108, 431, 642
PstNI	CAGNNNCTG	1 cut(s)	878
PsuI	RGATCY	2 cut(s)	106, 553
RsaI	GTAC	2 cut(s)	215, 518
RsaNI	GTAC	2 cut(s)	214, 517
RseI	CAYNNNNRTG	2 cut(s)	459, 528
SaqAI	TTAA	2 cut(s)	269, 321
SatI	GCNGC	1 cut(s)	233
Sau3AI	GATC	8 cut(s)	106, 121, 151, 226, 286, 553, 603, 814
ScrFI	CCNGG	2 cut(s)	160, 596
SduI	GDGCHC	1 cut(s)	45
SfaNI	GCATC	2 cut(s)	463, 549
SmiMI	CAYNNNNRTG	2 cut(s)	459, 528
SmlI	CTYRAG	2 cut(s)	503, 906
SmoI	CTYRAG	2 cut(s)	503, 906
Sse9I	AATT	5 cut(s)	57, 275, 400, 421, 559
SseBI	AGGCCT	1 cut(s)	790
SspMI	CTAG	2 cut(s)	38, 848
StuI	AGGCCT	1 cut(s)	790
StyD4I	CCNGG	2 cut(s)	158, 594
StyI	CCWWGG	3 cut(s)	187, 804, 847
TaaI	ACNGT	5 cut(s)	368, 461, 616, 737, 751
TaqI	TCGA	1 cut(s)	299
TaqII	GACCGA	1 cut(s)	827
TasI	AATT	5 cut(s)	57, 275, 400, 421, 559
TatI	WGTACW	1 cut(s)	213
TfiI	GAWTC	3 cut(s)	128, 301, 794
Tru1I	TTAA	2 cut(s)	269, 321
Tru9I	TTAA	2 cut(s)	269, 321
TscAI	CASTG	3 cut(s)	297, 373, 742
TseFI	GTSAC	2 cut(s)	362, 808
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	2 cut(s)	362, 808
TspRI	CASTG	3 cut(s)	297, 373, 742
XagI	CCTNNNNNAGG	1 cut(s)	191
XmaJI	CCTAGG	1 cut(s)	847
XspI	CTAG	2 cut(s)	38, 848
Zsp2I	ATGCAT	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.