MD17G1112400.v1.1

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
9626527 .. 9629218
2692 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1112400.v1.1.491

Sequence Viewer

Length: 1053 bp
ATGAAAAAGCAAAGTTTGCGTCGTTATTACATCGCCATACGACGTCGTCGTAGCCAGTGCTCCCCGCTTCCCGGCGGTTATAAAAACCGCCTTCCCTTTGAACAGTCACAATTTCCAATTCTTCTTCTCTCTCTCTGCGTCCAAGAGCTTCACTGCGTTTGCCCAAGAATCTCAAGTATCGCCATGCCAGTTGGGAATTCGAATGCATCTGATCGGGATGCTGAACCATTTGTGGAGGTTGATCCAACTGGACGGTATGGGCGGTATGCTGATCTCCTTGGTCATGGTGCTGTGAAGAAGGTTTATAGGGCTTTTGATCAGGAGGATGGTATAGAGGTGGCCTGGAATAAGGTCCGGTTGTGCAATTTCAGTGACGATCCAACACTCATTAATCGGCTTTACTCTGAGGTTAAGCTGTTGAGGCAATTGAAGAACAAGTATATCATTGTTTGTCACAGTGTTTGGAAGGAAGAGGCGCATAACACTTTGAATTTTATCACTGAGGTGTGCAATTCTGGAAACCTGAGGAAGTACAGGGAGAAGCATCCCCGTGTGTCGCTTAAGGCTCTGAAGAAGTGGTCGAGACAGGTGCTTGAGGGATTGGAATACCTCCATACGCATGAGCCGTGCATCATTCACAGAGATCTTAATTGCAGCAACATCTTCATCAACGGGAATACTGGCCAAGTGAAAATTGGTGATCTGGGGTTTGCAGCAATAGTGGGAAAGAACCACTTAGCACATTCGATTATAGGTACACCCGAGTACATGGCGCCCGAGCTGTATGAAGAGGATTACACAGAGATGGTGGACATATACTCGTTCGGGCTGTGCTTGCTGGAGATGGTGACAATGGAGATACCATACAGCGAGTGCGACTCTGTTGCTAAGATATACAAGAAGGTGACAACAGGTATCAAGCCTTTAGCATTGAACAAGGTGAACGATCCAGAGGTGAAGGCGTTCATTGAGAAAGCCATAGCCCAGCCGAGGGCAAGACCTACAGCCTCTGATCTTCTCAGGGATCCCTTCTTGTCTGAAGTCAATCAGTAA

Protein Analysis

351

Amino Acids

39.96

Weight (kDa)

8.64

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 91 - 345 1.6e-49 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 91 - 341 1e-32 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 81
AatII GACGTC 1 cut(s) 46
AccB1I GGYRCC 1 cut(s) 772
AciI CCGC 4 cut(s) 65, 75, 88, 262
AclWI GGATC 5 cut(s) 236, 371, 941, 1019, 1032
AcoI YGGCCR 1 cut(s) 682
AcsI RAATTY 2 cut(s) 196, 490
AcuI CTGAAG 1 cut(s) 590
AcyI GRCGYC 2 cut(s) 43, 773
AfaI GTAC 3 cut(s) 533, 757, 767
AfiI CCNNNNNNNGG 3 cut(s) 71, 990, 991
AflII CTTAAG 1 cut(s) 560
AgsI TTSAA 4 cut(s) 101, 430, 490, 934
AjnI CCWGG 1 cut(s) 341
AleI CACNNNNGTG 1 cut(s) 503
AluBI AGCT 3 cut(s) 148, 415, 781
AluI AGCT 3 cut(s) 148, 415, 781
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 577
AlwI GGATC 5 cut(s) 236, 371, 941, 1019, 1032
AlwNI CAGNNNCTG 1 cut(s) 1010
Ama87I CYCGRG 2 cut(s) 761, 776
AoxI GGCC 2 cut(s) 339, 682
ApeKI GCWGC 2 cut(s) 654, 713
ApoI RAATTY 2 cut(s) 196, 490
ArsI GACNNNNNNTTYG 1 cut(s) 36
AseI ATTAAT 1 cut(s) 390
Asp700I GAANNNNTTC 1 cut(s) 962
AspLEI GCGC 2 cut(s) 478, 775
AspS9I GGNCC 1 cut(s) 352
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 5 cut(s) 710, 859, 916, 952, 967
AsuII TTCGAA 1 cut(s) 200
AvaI CYCGRG 2 cut(s) 761, 776
AvaII GGWCC 1 cut(s) 352
AxyI CCTNAGG 1 cut(s) 524
BalI TGGCCA 1 cut(s) 684
BamHI GGATCC 1 cut(s) 1024
BanI GGYRCC 1 cut(s) 772
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 2 cut(s) 666, 725
BccI CCATC 3 cut(s) 320, 799, 838
BceAI ACGGC 1 cut(s) 610
BcgI CGANNNNNNTGC 4 cut(s) 571, 605, 866, 900
BciT130I CCWGG 1 cut(s) 343
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 577
BfmI CTRYAG 1 cut(s) 1002
BfoI RGCGCY 1 cut(s) 776
BfrI CTTAAG 1 cut(s) 560
BglII AGATCT 1 cut(s) 643
BisI GCNGC 2 cut(s) 655, 714
BlsI GCNGC 2 cut(s) 656, 715
Bme1390I CCNGG 2 cut(s) 72, 343
Bme18I GGWCC 1 cut(s) 352
BmeT110I CYCGRG 2 cut(s) 761, 776
BmgT120I GGNCC 1 cut(s) 352
BmiI GGNNCC 2 cut(s) 774, 1026
BmrFI CCNGG 2 cut(s) 72, 343
BmsI GCATC 4 cut(s) 208, 215, 553, 639
BplI GAGNNNNNCTC 2 cut(s) 863, 895
BpmI CTGGAG 1 cut(s) 860
Bpu14I TTCGAA 1 cut(s) 200
BpuEI CTTGAG 2 cut(s) 157, 614
BpuMI CCSGG 1 cut(s) 72
BsaHI GRCGYC 2 cut(s) 43, 773
BsaJI CCNNGG 2 cut(s) 277, 989
BsaWI WCCGGW 1 cut(s) 354
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 990, 991
Bse1I ACTGG 4 cut(s) 55, 188, 253, 685
Bse21I CCTNAGG 1 cut(s) 524
BseBI CCWGG 1 cut(s) 343
BseDI CCNNGG 2 cut(s) 277, 989
BseGI GGATG 3 cut(s) 223, 331, 544
BseLI CCNNNNNNNGG 3 cut(s) 71, 990, 991
BseMII CTCAG 4 cut(s) 396, 492, 515, 1033
BseNI ACTGG 4 cut(s) 55, 188, 253, 685
BseXI GCAGC 2 cut(s) 666, 725
BseYI CCCAGC 1 cut(s) 984
BshFI GGCC 2 cut(s) 341, 684
BshNI GGYRCC 1 cut(s) 772
BsiHKAI GWGCWC 1 cut(s) 62
BsiHKCI CYCGRG 2 cut(s) 761, 776
BsiSI CCGG 2 cut(s) 72, 355
BslI CCNNNNNNNGG 3 cut(s) 71, 990, 991
BsmAI GTCTC 1 cut(s) 577
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 2 cut(s) 341, 684
BsoBI CYCGRG 2 cut(s) 761, 776
Bsp119I TTCGAA 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 62
BspACI CCGC 4 cut(s) 65, 75, 88, 262
BspANI GGCC 2 cut(s) 341, 684
BspCNI CTCAG 4 cut(s) 397, 493, 516, 1032
BspLI GGNNCC 2 cut(s) 774, 1026
BspPI GGATC 5 cut(s) 236, 371, 941, 1019, 1032
BspT104I TTCGAA 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 772
BspTI CTTAAG 1 cut(s) 560
BsrI ACTGG 4 cut(s) 55, 188, 253, 685
BssECI CCNNGG 2 cut(s) 277, 989
BssNI GRCGYC 2 cut(s) 43, 773
BssT1I CCWWGG 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 343
Bst4CI ACNGT 3 cut(s) 105, 255, 458
Bst6I CTCTTC 2 cut(s) 465, 783
BstACI GRCGYC 2 cut(s) 43, 773
BstAFI CTTAAG 1 cut(s) 560
BstAPI GCANNNNNTGC 1 cut(s) 16
BstBI TTCGAA 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 836
BstDEI CTNAG 6 cut(s) 405, 501, 524, 736, 888, 1019
BstF5I GGATG 3 cut(s) 223, 331, 544
BstH2I RGCGCY 1 cut(s) 776
BstHHI GCGC 2 cut(s) 478, 775
BstMAI GTCTC 1 cut(s) 577
BstMWI GCNNNNNNNGC 3 cut(s) 16, 421, 835
BstNI CCWGG 1 cut(s) 343
BstSCI CCNGG 2 cut(s) 70, 341
BstSFI CTRYAG 1 cut(s) 1002
BstV1I GCAGC 2 cut(s) 666, 725
BstX2I RGATCY 2 cut(s) 643, 1024
BstYI RGATCY 2 cut(s) 643, 1024
Bsu36I CCTNAGG 1 cut(s) 524
BsuRI GGCC 2 cut(s) 341, 684
BtgZI GCGATG 1 cut(s) 16
BtsCI GGATG 3 cut(s) 223, 331, 544
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 5 cut(s) 62, 151, 376, 463, 498
Cac8I GCNNGC 1 cut(s) 836
CaiI CAGNNNCTG 1 cut(s) 1010
CfoI GCGC 2 cut(s) 478, 775
Cfr13I GGNCC 1 cut(s) 352
CseI GACGC 2 cut(s) 8, 127
Csp6I GTAC 3 cut(s) 532, 756, 766
CviAII CATG 4 cut(s) 184, 284, 620, 769
CviQI GTAC 3 cut(s) 532, 756, 766
DdeI CTNAG 6 cut(s) 405, 501, 524, 736, 888, 1019
DinI GGCGCC 1 cut(s) 774
EaeI YGGCCR 1 cut(s) 682
Eam1104I CTCTTC 2 cut(s) 465, 783
EarI CTCTTC 2 cut(s) 465, 783
Eco130I CCWWGG 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 352
Eco57I CTGAAG 1 cut(s) 590
Eco81I CCTNAGG 1 cut(s) 524
Eco88I CYCGRG 2 cut(s) 761, 776
EcoRI GAATTC 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 341
EcoT14I CCWWGG 1 cut(s) 277
EcoT22I ATGCAT 1 cut(s) 208
EgeI GGCGCC 1 cut(s) 774
EheI GGCGCC 1 cut(s) 774
ErhI CCWWGG 1 cut(s) 277
FaeI CATG 4 cut(s) 187, 287, 623, 772
FalI AAGNNNNNCTT 2 cut(s) 719, 751
FatI CATG 4 cut(s) 183, 283, 619, 768
FauI CCCGC 1 cut(s) 72
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 2 cut(s) 655, 714
FokI GGATG 3 cut(s) 230, 338, 531
Fsp4HI GCNGC 2 cut(s) 655, 714
GlaI GCGC 2 cut(s) 477, 774
GluI GCNGC 2 cut(s) 655, 714
GsaI CCCAGC 1 cut(s) 988
GsuI CTGGAG 1 cut(s) 860
HaeII RGCGCY 1 cut(s) 776
HaeIII GGCC 2 cut(s) 341, 684
HapII CCGG 2 cut(s) 72, 355
HgaI GACGC 2 cut(s) 8, 127
HhaI GCGC 2 cut(s) 478, 775
Hin1I GRCGYC 2 cut(s) 43, 773
Hin1II CATG 4 cut(s) 187, 287, 623, 772
Hin6I GCGC 2 cut(s) 476, 773
HinP1I GCGC 2 cut(s) 476, 773
HinfI GANTC 2 cut(s) 168, 878
HpaII CCGG 2 cut(s) 72, 355
HphI GGTGA 5 cut(s) 710, 859, 916, 952, 967
Hpy166II GTNNAC 3 cut(s) 758, 811, 943
Hpy188I TCNGA 5 cut(s) 211, 406, 570, 1012, 1039
Hpy188III TCNNGA 5 cut(s) 215, 320, 516, 582, 950
Hpy8I GTNNAC 3 cut(s) 758, 811, 943
Hpy99I CGWCG 4 cut(s) 24, 45, 48, 51
HpyAV CCTTC 6 cut(s) 101, 292, 460, 895, 952, 1039
HpyCH4III ACNGT 3 cut(s) 105, 255, 458
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 6 cut(s) 206, 363, 510, 630, 654, 713
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 421, 835
HpyF3I CTNAG 6 cut(s) 405, 501, 524, 736, 888, 1019
HpySE526I ACGT 1 cut(s) 43
Hsp92I GRCGYC 2 cut(s) 43, 773
Hsp92II CATG 4 cut(s) 187, 287, 623, 772
HspAI GCGC 2 cut(s) 476, 773
KasI GGCGCC 1 cut(s) 772
Ksp22I TGATCA 1 cut(s) 316
LmnI GCTCC 1 cut(s) 65
Lsp1109I GCAGC 2 cut(s) 666, 725
LweI GCATC 4 cut(s) 208, 215, 553, 639
MaeII ACGT 1 cut(s) 43
MaeIII GTNAC 5 cut(s) 105, 371, 452, 847, 904
MboII GAAGA 9 cut(s) 113, 116, 307, 442, 482, 583, 655, 800, 1007
MfeI CAATTG 1 cut(s) 425
MflI RGATCY 2 cut(s) 643, 1024
MhlI GDGCHC 1 cut(s) 62
MlsI TGGCCA 1 cut(s) 684
MluCI AATT 9 cut(s) 110, 117, 196, 364, 425, 490, 511, 649, 693
MluNI TGGCCA 1 cut(s) 684
Mly113I GGCGCC 1 cut(s) 773
MlyI GAGTC 1 cut(s) 872
MmeI TCCRAC 2 cut(s) 269, 404
Mox20I TGGCCA 1 cut(s) 684
Mph1103I ATGCAT 1 cut(s) 208
MroXI GAANNNNTTC 1 cut(s) 962
MscI TGGCCA 1 cut(s) 684
MseI TTAA 4 cut(s) 390, 411, 561, 648
MslI CAYNNNNRTG 4 cut(s) 503, 549, 618, 803
Msp20I TGGCCA 1 cut(s) 684
MspCI CTTAAG 1 cut(s) 560
MspI CCGG 2 cut(s) 72, 355
MspR9I CCNGG 2 cut(s) 72, 343
MunI CAATTG 1 cut(s) 425
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 1 cut(s) 343
MwoI GCNNNNNNNGC 3 cut(s) 16, 421, 835
NarI GGCGCC 1 cut(s) 773
NciI CCSGG 1 cut(s) 72
NlaIII CATG 4 cut(s) 187, 287, 623, 772
NlaIV GGNNCC 2 cut(s) 774, 1026
NmeAIII GCCGAG 1 cut(s) 1014
NmuCI GTSAC 5 cut(s) 105, 371, 452, 847, 904
NsiI ATGCAT 1 cut(s) 208
NspV TTCGAA 1 cut(s) 200
OliI CACNNNNGTG 1 cut(s) 503
PcsI WCGNNNNNNNCGW 2 cut(s) 46, 623
PctI GAATGC 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 962
PfeI GAWTC 1 cut(s) 168
PflFI GACNNNGTC 1 cut(s) 45
PkrI GCNGC 2 cut(s) 656, 715
PleI GAGTC 1 cut(s) 872
PluTI GGCGCC 1 cut(s) 776
PpsI GAGTC 1 cut(s) 872
PshBI ATTAAT 1 cut(s) 390
PsiI TTATAA 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 341
PspFI CCCAGC 1 cut(s) 984
PspGI CCWGG 1 cut(s) 341
PspN4I GGNNCC 2 cut(s) 774, 1026
PspPI GGNCC 1 cut(s) 352
PstNI CAGNNNCTG 1 cut(s) 1010
PsuI RGATCY 2 cut(s) 643, 1024
PsyI GACNNNGTC 1 cut(s) 45
RsaI GTAC 3 cut(s) 533, 757, 767
RsaNI GTAC 3 cut(s) 532, 756, 766
RseI CAYNNNNRTG 4 cut(s) 503, 549, 618, 803
SaqAI TTAA 4 cut(s) 390, 411, 561, 648
SatI GCNGC 2 cut(s) 655, 714
Sau96I GGNCC 1 cut(s) 352
SchI GAGTC 1 cut(s) 872
ScrFI CCNGG 2 cut(s) 72, 343
SduI GDGCHC 1 cut(s) 62
SfaNI GCATC 4 cut(s) 208, 215, 553, 639
SfcI CTRYAG 1 cut(s) 1002
SfoI GGCGCC 1 cut(s) 774
SfuI TTCGAA 1 cut(s) 200
SinI GGWCC 1 cut(s) 352
SmiMI CAYNNNNRTG 4 cut(s) 503, 549, 618, 803
SmlI CTYRAG 3 cut(s) 172, 560, 593
SmoI CTYRAG 3 cut(s) 172, 560, 593
Sse9I AATT 9 cut(s) 110, 117, 196, 364, 425, 490, 511, 649, 693
SsiI CCGC 4 cut(s) 65, 75, 88, 262
SspDI GGCGCC 1 cut(s) 772
StyD4I CCNGG 2 cut(s) 70, 341
StyI CCWWGG 1 cut(s) 277
TaaI ACNGT 3 cut(s) 105, 255, 458
TaiI ACGT 1 cut(s) 46
TaqI TCGA 3 cut(s) 200, 581, 746
TasI AATT 9 cut(s) 110, 117, 196, 364, 425, 490, 511, 649, 693
TatI WGTACW 2 cut(s) 531, 765
TfiI GAWTC 1 cut(s) 168
Tru1I TTAA 4 cut(s) 390, 411, 561, 648
Tru9I TTAA 4 cut(s) 390, 411, 561, 648
TscAI CASTG 5 cut(s) 62, 158, 376, 463, 505
TseFI GTSAC 5 cut(s) 105, 371, 452, 847, 904
TseI GCWGC 2 cut(s) 654, 713
Tsp45I GTSAC 5 cut(s) 105, 371, 452, 847, 904
TspDTI ATGAA 4 cut(s) 17, 655, 801, 955
TspRI CASTG 5 cut(s) 62, 158, 376, 463, 505
Tth111I GACNNNGTC 1 cut(s) 45
Vha464I CTTAAG 1 cut(s) 560
VpaK11BI GGWCC 1 cut(s) 352
VspI ATTAAT 1 cut(s) 390
XapI RAATTY 2 cut(s) 196, 490
XcmI CCANNNNNNNNNTGG 1 cut(s) 692
XmnI GAANNNNTTC 1 cut(s) 962
ZraI GACGTC 1 cut(s) 44
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.